These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7678#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 544 fasta sequence [ATTGTGATGAAATTGAAAATTATGGTGAAGCATTCTCTAAAGATGATGTGATCGGTTGCTTTTTGGATACGATTGAACACACTATTAAATGGTCAAAAAACGGTTTGGAATTTGGTGATGCTTATCAAATTCCATCTGAATTGTTACATTCTAAAAATTTGACAGCATTATATCCAACTGTGTCCTTGCTGAATTCTACTGTGGAATTGAACTTTGGCGATAAACCATTTAAATATTATCCCGGGCCTGATTGGACGCCTGTATGCTGTGCTCCTCCTGAATGTACAAAACGTTCAAGACGTAAGGGTCCTGAACGGAAAGTGAAAGGGTGGTCATATATTGATCCAACTATTTTAGAACCATCAATTCGACAAACAATGCAGTCGATTGAAAGAAGTGAACCACAAATTGAAACAGAAACATTTCATGATGAAAATGGTCAAATGATCAAACGTATTGTTAAACGTTCTGAAGTGACTACTACAAAAACTGTTAGTGAACGTATTACTGCAAGTACTACGGGTCAAATCGTTCATGCTAATGG] [+] EMBL CD083527 [ATTGTGATGAAATTGAAAATTATGGTGAAGCATTCTCTAAAGATGATGTGATCGGTTGCTTTTTGGATACGATTGAACACACTATTAAATGGTCAAAAAACGGTTTGGAATTTGGTGATGCTTATCAAATTCCATCTGAATTGTTACATTCTAAAAATTTGACAGCATTATATCCAACTGTGTCCTTGCTGAATTCTACTGTGGAATTGAACTTTGGCGATAAACCATTTAAATATTATCCCGGGCCTGATTGGACGCCTGTATGCTGTGCTCCTCCTGAATGTACAAAACGTTCAAGACGTAAGGGTCCTGAACGGAAAGTGAAAGGGTGGTCATATATTGATCCAACTATTTTAGAACCATCAATTCGACAAACAATGCAGTCGATTGAAAGAAGTGAACCACAAATTGAAACAGAAACATTTCATGATGAAAATGGTCAAATGATCA ] [+] EMBL CD195729 [ TTTGGAATTTGGTGATGCTTATCAAATTCCATCTGAATTGTTACATTCTAAAAATTTGACAGCATTATATCCAACTGTGTCCTTGCTGAATTCTACT ] [-] EMBL CD093228 [ TTCTAGACGTAAAGGTCCTGAACGGAAAGTGAAAGGGTGGTCATATATTGATCCGACTATTTTGGAACCATCAATTGGACAAACAATGCAGTCGATTGAAAGAAGTGAACCACAAATTGAAACAGAAACATTTCATGATGAAAATGGTGAAATGATCAAACGTATTGTTAAACGTTCTGAAGTGACTACTACAAAAACTGTTAGTGAACGTATTACTGCAAGTACTACGGGTCAAATCGTTCATGCTAATGG] consensusID : consensus_7678#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence [TTCTAGACGTAAAGGTCCTGAACGGAAAGTGAAAGAGTGGAGGTTTAGGAATTCNNNCCCNNNNCTTGTTCCACTGCCTGCACAATCACTCCGATTGNAAGAAATGAAACACAAATTGTGACCCCAACACTTCATTATTAAAAAAGGNGTAATAATAAATACGTCGTTGTTAAACGTTCTGAAGTGACTACTACAAAAACTGTTAGTGAACGTATTACTGCAAGTACTACGGGTCAAATCGTTCATGCTAATGG] [-] EMBL CD093231 [TTCTAGACGTAAAGGTCCTGAACGGAAAGTGAAAGAGTGGAGGTTTAGGAATTCNNNCCCNNNNCTTGTTCCACTGCCTGCACAATCACTCCGATTGNAAGAAATGAAACACAAATTGTGACCCCAACACTTCATTATTAAAAAAGGNGTAATAATAAATACGTCGTTGTTAAACGTTCTGAAGTGACTACTACAAAAACTGTTAGTGAACGTATTACTGCAAGTACTACGGGTCAAATCGTTCATGCTAATGG] consensusID : consensus_7678#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [AAAATCTGTGTGTTGTCAGTGTGCGCGTTACGTATATTTACTCACAGGTTATGAATATCTACATGTACCAATTGACACTCGCATGAGAATCCGTTTTCCCTAGTGTACATGTATACTATACCTATCCAGGTGCAATCCCAGGTTCAATTCTTTCAATCGACTGCATTGTTTGTCCAATTGATGGTTCCAAAATAAGTTGGATCAATATATGACCACCCTTTCACTTTCCGTTCAGGACCTTTACGTCTACAA] [+] EMBL CD093234 [AAAATCTGTGTGTTGTCAGTGTGCGCGTTACGTATATTTACTCACAGGTTATGAATATCTACATGTACCAATTGACACTCGCATGAGAATCCGTTTTCCCTAGTGTACATGTATACTATACCTATCCAGGTGCAATCCCAGGTTCAATTCTTTCAATCGACTGCATTGTTTGTCCAATTGATGGTTCCAAAATAAGTTGGATCAATATATGACCACCCTTTCACTTTCCGTTCAGGACCTTTACGTCTACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7678#0 ATTGTGATGAAATTGAAAATTATGGTGAAGCATTCTCTAAAGATGATGTGATCGGTTGCT 60 consensus_7678#1 ------------------------------------------------------------ consensus_7678#2 ------------------------------------------------------------ consensus_7678#0 TTTTGGATACGATTGAACACACTATTAAATGGTCAAAAAACGGTTTGGAATTTGGTGATG 120 consensus_7678#1 ------------------------------------------------------------ consensus_7678#2 ------------------------------------------------------------ consensus_7678#0 CTTATCAAATTCCATCTGAATTGTTACATTCTAAAAATTTGACAGCATTATATCCAACTG 180 consensus_7678#1 ------------------------------------------------------------ consensus_7678#2 ------------------------------------------------------------ consensus_7678#0 TGTCCTTGCTGAATTCTACTGTGGAATTGAACTTTGGCGATAAACCATTTAAATATTATC 240 consensus_7678#1 ------------------------------------------------------------ consensus_7678#2 ------------------------------------------------------------ consensus_7678#0 CCGGGCCTGATTGGACGCCTGTATGCTGTGCTCCTCCTGAATGTACAAAACGTTCAAGAC 300 consensus_7678#1 ----------------------------------------------------TTCTAGAC 8 consensus_7678#2 -------------------------------------------------AAAATCTGTGT 11 ** consensus_7678#0 GTAAGGGTCCTGAACGGAAAGTGAAAG-GGTGGTCATATATTGATCCAACTATTTTAGAA 359 consensus_7678#1 GTAAAGGTCCTGAACGGAAAGTGAAAG-AGTGGAGGTTTAGGAATTCNNNC-CCNNNNCT 66 consensus_7678#2 GTTGTCAGTGTGCGCGTTACGTATATTTACTCACAGGTTATGAATATCTACATGTACCAA 71 ** ** ** * ** * * ** ** consensus_7678#0 CCATCAATTCGACAAACAATGCAGTCGATTGAAAGAAGTGAACCACAAATTGAAACAGAA 419 consensus_7678#1 TGTTCCACTGCCTGCACAATCACTCCGATTGNAAGAAATGAAACACAAATTGTGACCCCA 126 consensus_7678#2 TTGACACTCGCATGAGAATCCGTTTTCCCTAGTGTACATGTATACTATACCTATCCAGGT 131 * * * * ** * * * * consensus_7678#0 ACATTTCATGAT-GAAAATGGTCAAATGATCAA-ACGT-ATTGTTAAACGTTCTGAAGTG 476 consensus_7678#1 ACACTTCATTATTAAAAAAGGNGTAATAATAAATACGTCGTTGTTAAACGTTCTGAAGTG 186 consensus_7678#2 GCAATCCCAGGTTCAATTCTTTCAATCGACTGC------ATTGTT---TGTCC--AATTG 180 ** * * * ** * * ***** ** * ** ** consensus_7678#0 ACTACTACAAAAACTGTTAG-TGAACGTATTACTGCAAGTAC---TACGGGTCAAATCGT 532 consensus_7678#1 ACTACTACAAAAACTGTTAG-TGAACGTATTACTGCAAGTAC---TACGGGTCAAATCGT 242 consensus_7678#2 ATGGTTCCAAAATAAGTTGGATCAATATATGACCACCCTTTCACTTTCCGTTCAGGACCT 240 * * ***** *** * * ** *** ** * * * * * * *** * * consensus_7678#0 TCATGCTAATGG 544 consensus_7678#1 TCATGCTAATGG 254 consensus_7678#2 TTACGTCTACAA 252 * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||