These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7680#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 929 fasta sequence [TCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGTGATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACGAACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGACGCAATAAATCATCTGCCTTCATACGAGGAACTTTCTCCGGAACTTCAAAAACCTGTTAGTAATGAACAAATAAATACACAACCAATAATCCAGTCAACCCATACACTGAAAAAGCATAAAAGTTGGCAACATAGACTACGTGATTTAGAACCTGTTGCCTGGATGATTTTTATCGGTGATGGTG-CCCATAATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGGTTTAGGAATAAGTTTAACATTGGCTGTTTTATGTGAAGAA-CTTCCACATGAATTAGGTGATATTGCTGTACTTCTACGTTCTGGACTAACTGTACCAATGGCTATGTTATTTAATTTTGTTTCTGCGTGTACGGCTTATATAGGATTGTTTATTGGTTTATCTGTTGGTGATCTAAATGATGTAGCGCCATATGTGTTTGCTTTAACCGGTGGCTTCTTTATGTATATTGCTCTTGCAGATATGCTTCCAGAAATGCGTGCTATGGAAGATGCAAAACGATTAGAGAATGGTAATTGTTGGGCAATGTTTTTCACCAATCTTATTGGTCTCCTATTCGGTTTTGGATGTATTGTTACGATTTCATTGACTAGTGAATATATTAATATATAATTATTATTATTATTATTACTATTATTCTTTCGTAACTTATCAAGTATAATCAAACAATANACTAAGAATTTGTCAATTCAATGATTTTTTTATTGNGATTTAATTNTTTTTACTTACTCTTTTC] [-] EMBL CD128977 [TCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGTGATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACGAACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGACGCAATAAATCATCTGCCTTCATACGAGGAACTTTCTCCGGAACTTCAAAAACCTGTTAGTAATGAACAAATAAATACACAACCAATAATCCAGTCAATCCATACACTGAAAAAGCATAAAAGTTGGCAACATAGACTACGTGATTTAGAACCTGTTGCCTGGATGATTTTTATCGGTGATGGTG CCCATAATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGGTTTAGGAATAAGTTTGGCATTGGCTGTTTTATGTGAAGAA CAACCACATGAATTAGGTGATgctcggtat ] [+] EMBL CD128832 [ CTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGTGATAAAGATGGGCCTATTTTTGAGTTC CACCTAACCGTTCTGATCAGTCGAAAACAACGAACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGACGCAATAAATCATCTGCCTTCATACGAGGAACTTTCTCCGGAACTTCAAAAACCTGTTAGTAATGAACAAATAAATACACAACCAATAATCCAGTCAACCCATACACTGAAAAAGCATAAAAGTTGGCAACATAGACTACGTGATTTAAAACCTGTTGCCTGGATGATTTTTATCGGTGATGGTGCCCCAT ATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGGTGTAGGAATAAGTTTAACATTGGCTGTTTTATGTGAAGAACCTTCC ] [+] EMBL CD064074 [ tACTTCAAAAA CTGTTAGT ATGAACAAATAAATACACAACCAATAATCCAGTCAACCCATACACTGAAAAAACATAAAAGTTGGCAACATAGACTACGTGATTTAGAACCTGTTGCCTGGATGATTTTTATCGGTGATGGTG CCCATAATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGGTTTAGGAATAAGTTTAACATTGGCTGTTTTATGTGAAGAA CTTCCACATGAATTAGGTGATATTGCTGTACTTCTACGTTCTGGACTAACTGTACCAATGGCTATGTTATTTAATTTTGTTTCTGCGTGTACGGCTTATATAGGATTGTTTATTGGTTTATCTGTTGGTGATCTAAATGATGTAGCGCCATATGTGTTTGCTTTAACCGGTGGCTTCTTTATGTATATTGCTCTTGCAGATATGCTTCCAGAAATGCGTGCTATGGAA ] [+] EMBL CD079062 [ AAAAGCATAAAAGTTGGCAACATAGACTACGTGATTTAGAACCTGTTGCCTGGATGATTTTTATCGGTGATGGTG CCCATAATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGGTTTAGGAATAAGTTTAACATTGGCTGTTTTATGTGAAGAA CTTCCACATGAATTAGGTGATATTGCTGTACTTCTACGTTCTGGACTAACTGTACCAATGGCTATGTTATTTAATTTTGTTTCTGCGTGTACGGCTTATATAGGATTGTTTATTGGTTTATCTGTTGGTGATCTAAATGATGTAGCGCCATATGTGTTTGCTTTAACCGGTGGCTTCTTTATGTATATTGCTCTTGCAGATATGCTTCCAGAAATGCGTGCTATGGAAGATGCAAAACGATTAGAGAATGGTAATTGTTGGGCAATGTTTTTCACCAATCTTATTGGTCTCCTATTCGGTTTTGGATGTATTGTTACGATTTCATTGACTAGTGAATATATTAATATATAATTATTATTATTATTATTACTATTATTCTTTCGTAACTTATCAAGTATAATCAAACAATANACTAAGAATTTGTCAATTCAATGATTTTTTTATTGNGATTTAATTNTTTTTACTTACTCTTTTC] consensusID : consensus_7680#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [ATGAATAAAAGTCAAAATGGATTTCATATAGATCAATTTAATCATCATCATCACCATCAACATTGTCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGTGATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACGAACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGACGCAATAAATCATCTGCCTTCATACGAGGTGGATAACTTGTTTACTTTAACCGATCATTGATATTAGTATTATTTTCTATTTTATTAATTTATATCAGAACAATCGTGACAATTAGTGTTATCATACACAGTACCAATATGATATTATACTAATACTATACATCATTGTGCCGAATTTGAAAATATCAAGTCAGCAAAGTTACGTTTTTTCTACAGAAACTGTTTTATTCCTATTTTCTAGTGTTTCTAACTATGATAATCATGTGTCAATCGACCATTAGTGTTGTATTGTTTTCGGTTACATGATGGAGACCTGT] [-] EMBL CD077186 [ATGAATAAAAGTCAAAATGGATTTCATATAGATCAATTTAATCATCATCATCACCATCAACATTGTCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGTGATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACGAACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGACGCAATAAATCATCTGCCTTCATACGAGGTGGATAACTTGTTTACTTTAACCGATCATTGATATTAGTATTATTTTCTATTTTATTAATTTATATCAGAACAATCGTGACAATTAGTGTTATCATACACAGTACCAATATGATATTATACTAATACTATACATCATTGTGCCGAATTTGAAAATATCAAGTCAGCAAAGTTACGTTTTTTCTACAGAAACTGTTTTATTCCTATTTTCTAGTGTTTCTAACTATGATAATCATGTGTCAATCGACCATTAGTGTTGTATTGTTTTCGGTTACATGATGGAGACCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7680#0 ------------------------------------------------------------ consensus_7680#1 ATGAATAAAAGTCAAAATGGATTTCATATAGATCAATTTAATCATCATCATCACCATCAA 60 consensus_7680#0 -----TCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGT 55 consensus_7680#1 CATTGTCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGT 120 ******************************************************* consensus_7680#0 GATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACG 115 consensus_7680#1 GATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACG 180 ************************************************************ consensus_7680#0 AACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGAC 175 consensus_7680#1 AACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGAC 240 ************************************************************ consensus_7680#0 GCAATAAATCATCTGCCTTCATACGAGG-AACTTTCTCCGGAACTTCAAAAACCTGTTAG 234 consensus_7680#1 GCAATAAATCATCTGCCTTCATACGAGGTGGATAACTTGTTTACTTT---AACCGATCAT 297 **************************** * ** **** **** * * consensus_7680#0 TAATGAACAAATAAATACACAACCAATAATCCAGTCAACCCATACACTGAAAAAGCATAA 294 consensus_7680#1 TGAT------ATTAGTATT--ATTTTCTATTTTATTAATTTATAT-CAGAACAATCGTGA 348 * ** ** * ** * ** * ** *** * *** ** * * * consensus_7680#0 AAGTTGGCAACATAGACTACGTGATTTAGAACCTGTTGCCTGGATGATTTTTATCGGTGA 354 consensus_7680#1 CAATTAGTGTTATCATACACAGTACCAATATGATATTATACTAATACTATACATC----A 404 * ** * ** ** * * * * ** ** * * *** * consensus_7680#0 TGGTGCCCATAATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGG 414 consensus_7680#1 TTGTGCC---GAATTTGAAAATATCAAGTCAGCAAAGTTACGTTTTTTCTACAGAAACTG 461 * ***** * *** ** *** * * * *** * ** * * * consensus_7680#0 TTTAGGAATAAGTTTAACATTGGCTGTTTTATGTGAAGAACTTCCACATGAATTAGGTGA 474 consensus_7680#1 TTTTATTCCTATTTT----CTAGTGTTTCTAACTATGATAATCATGTGTCAATCGACCAT 517 *** * *** * * ** ** * * * * *** consensus_7680#0 TATTGCTGTACTTCTACGTTCTGGACTAACTGTACCAATGGCTATGTTATTTAATTTTGT 534 consensus_7680#1 TAGTGTTGTATT-----GTTTTCGGTTACATG-ATGGAGACCTGT--------------- 556 ** ** **** * *** * * ** ** * * ** * consensus_7680#0 TTCTGCGTGTACGGCTTATATAGGATTGTTTATTGGTTTATCTGTTGGTGATCTAAATGA 594 consensus_7680#1 ------------------------------------------------------------ consensus_7680#0 TGTAGCGCCATATGTGTTTGCTTTAACCGGTGGCTTCTTTATGTATATTGCTCTTGCAGA 654 consensus_7680#1 ------------------------------------------------------------ consensus_7680#0 TATGCTTCCAGAAATGCGTGCTATGGAAGATGCAAAACGATTAGAGAATGGTAATTGTTG 714 consensus_7680#1 ------------------------------------------------------------ consensus_7680#0 GGCAATGTTTTTCACCAATCTTATTGGTCTCCTATTCGGTTTTGGATGTATTGTTACGAT 774 consensus_7680#1 ------------------------------------------------------------ consensus_7680#0 TTCATTGACTAGTGAATATATTAATATATAATTATTATTATTATTATTACTATTATTCTT 834 consensus_7680#1 ------------------------------------------------------------ consensus_7680#0 TCGTAACTTATCAAGTATAATCAAACAATANACTAAGAATTTGTCAATTCAATGATTTTT 894 consensus_7680#1 ------------------------------------------------------------ consensus_7680#0 TTATTGNGATTTAATTNTTTTTACTTACTCTTTTC 929 consensus_7680#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||