These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7682#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 716 fasta sequence [CCAGAATCGGCACGAGGGTTATACGTGGTACAGGTTTATATGAATTATGGCGTACTGGTCGTTATAAAAGTTATCCACCTGGTATGCTAATTGATTTGATTGCTAGAATATTAGCTTTGGTTCCACCATGGACTCGAATTTATCGTATTCAAAGAGATATTCCTATGCCATTGGTAACTAGTGGTGTGGAACATGGTAATTTACGTGAACTTGTATTAGCTCGAATGGAAGAACTAGGTGCTAGCTGTCGTGATGTTCGAACACGTGAAGTTGGCATACAAGAAATACATTCACGTGTAAAACCATATCAGGTTGAACTTGTTCGTAGAGATTATGTTGCAAATGGTGGTTGGGAGACATTTTTAGCCTATGAGGATCCATATCAAGATATATTGATCGGTTTATTACGTTTAAGAAAGTGTTCACTGCAAACATTTAGACCAGAATTAATCGTTAAAACACATAATAATGATGATGACGATGTTCAAGGTAATAAAGATCCTCGTTGTTCCATTGTGCGTGAATTACATGTATATGGTAGTGCTGTTCCAGTGGCTGCTAGGGATCCCACGAAGTTTCAACATCAAGGTTTCGGAACTTTACTAATGGAAGAAGCAGAACGTATAGCTAAATATGAACATGGTTCATTGAAGATTGCAGTTATATCCGGTGTGGGGACTAGAAACTACTATCGAAAATTGGGTTATAAATTAGAG] [+] EMBL CD083946 [CCAGAATCGGCACGAGGGTTATACGTGGTACAGGTTTATATGAATTATGGCGTACTGGTCGTTATAAAAGTTATCCACCTGGTATGCTAATTGATTTGATTGCTAGAATATTAGCTTTGGTTCCACCATGGACTCGAATTTATCGTATTCAAAGAGATATTCCTATGCCATTGGTAACTAGTGGTGTGGAACATGGTAATTTACGTGAACTTGTATTAGCTCGAATGGAAGAACTAGGTGCTAGCTGTCGTGATGTTCGAACACGTGAAGTTGGCATACAAGAAATACATTCACGTGTAAAACCATATCAGGTTGAACTTGTTCGTAGAGATTATGTTGCAAATGGTGGTTGGGAGACATTTTTAGCCTATGAGGATCCATATCAAGATATATTGATCGGTTTATTACGTTTAAGAAAGTGTTCACTGCAAACATTTAGACCAGAATTAATCG ] [-] EMBL CD166476 [ TGGTACAGGTTTATATGAATTATGGCGTACTGGTCGTTATAAAAGTTATCCACCTGGTATGCTAATTGATTTGATTGCTAGAATATTAGCTTTGGTTCCACCATGGACTCGAATTTATCGTATTCAAAGAGATATTCCTATGCCATTGGTAACTAGTGGTGTGGAACATGGTAATTTACGTGAACTTGTATTAGCTCGAATGGAAGAACTAGGTGCTAGCTGTCGTGATGTTCGAACACGTGAAGTTGGCATACAAGAAATACATTCACGTGTAAAACCATATCAGGTTGAACTTGTTCGTAGAGA TATGTTGC AAT GT GTTGGcgat ] [-] EMBL CD140745 [ TGGCATACAAGAAATACATTCACGTGTAAAACCATATCAGGTTGAACTTGTTCGTAGAGATTATGTTGCAAATGGTGGTTGGGAGACATTTTTAGCCTATGAGGATCCATATCAAGATATATTGATCGGTTTATTACGTTTAAGAAAGTGTTCACTGCAAACATTTAGACCAGAATTAATCGTTAAAACACATAATAATGATGATGACGATGTTCAAGGTAATAAAGATCCTCGTTGTTCCATTGTGCGTGAATTACATGTATATGGTAGTGCTGTTCCAGTGGCTGCTAGGGATCCCACGAAGTTTCAACATCAAGGTTTCGGAACTTTACTAATGGAAGAAGCAGAACGTATAGCTAAATATGAACATGGTTCATTGAAGATTGCAGTTATATCCGGTGTGGGGACTAGAAACTACTATCGAAAATTGGGTTATAAATTAGAG] consensusID : consensus_7682#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 433 fasta sequence [AAGCTGTTTGTGAATCATTTCATTTATCTAAAGATGCTGGATTTAAAGTTGTTTCACATATGATGCCTGATCTACCAAATGTTGGCTGGGAACGTGATTTAGCACAATTTGCTGAATATTTTGAAAATCCAGCATTTCGTTCAGATGGATTAAAAATTTATCCAACACTTGTTATACGTGGTACAGGTTTATATGAATTATGGCGTACTGGTCGTTATAAAAGTTATCCACCTGGTATGCTAATTGATTTGATTGCTAGAATATTAGCTTTGGTTCCACCATGGACTCGAATTTATCGTATTCAAAGAGATATTCCTATGCCATTGGTAACTAGTGGTGTGGAACATGGTAATTTACGTGAACTTGTATTAGCTCGAATGGAAGAACTAGGTGCTAGCTGTCGTGATGTTCGAACACGTGAAGTTGGCATACA] [-] EMBL CD136574 [AAGCTGTTTGTGAATCATTTCATTTATCTAAAGATGCTGGATTTAAAGTTGTTTCACATATGATGCCTGATCTACCAAATGTTGGCTGGGAACGTGATTTAGCACAATTTGCTGAATATTTTGAAAATCCAGCATTTCGTTCAGATGGATTAAAAATTTATCCAACACTTGTTATACGTGGTACAGGTTTATATGAATTATGGCGTACTGGTCGTTATAAAAGTTATCCACCTGGTATGCTAATTGATTTGATTGCTAGAATATTAGCTTTGGTTCCACCATGGACT ] [+] EMBL CD140821 [ GCTGTTTGTGAATCATTTCATTTATCTAAAGATGCTGGATTTAAAGTTGTTTCACATATGATGCCTGATCTACCAAATGTTGGCTGGGAACGTGATTTAGCACAATTTGCTGAATATTTTGAAAATCCGGCATTTCGTTCAGATGGATTAAAAATTTATCCAACACTTGTTATACGTGGTACAGGTTTATATGAATTATGGCGTACTGGTCGTTATAAAAGTTATCCACCTGGTATGCTAATTGATTTGATTGCTAGAATATTAGCTTTGGTTCCACCATGGACTCGAATTTATCGTATTCAAAGAGATATTCCTATGCCATTGGTAACTAGTGGTGTGGAACATGGTAATTTACGTGAACTTGTATTAGCTCGAATGGAAGAACTAGGTGCTAGCTGTCGTGATGTTCGAACACGTGAAGTTGGCATACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7682#0 ------------------------------------------------------------ consensus_7682#1 AAGCTGTTTGTGAATCATTTCATTTATCTAAAGATGCTGGATTTAAAGTTGTTTCACATA 60 consensus_7682#0 ------------------------------------------------------------ consensus_7682#1 TGATGCCTGATCTACCAAATGTTGGCTGGGAACGTGATTTAGCACAATTTGCTGAATATT 120 consensus_7682#0 ------------------------------CCAGAATCGGCACGAGG---GTTATACGTG 27 consensus_7682#1 TTGAAAATCCAGCATTTCGTTCAGATGGATTAAAAATTTATCCAACACTTGTTATACGTG 180 * *** * * ********** consensus_7682#0 GTACAGGTTTATATGAATTATGGCGTACTGGTCGTTATAAAAGTTATCCACCTGGTATGC 87 consensus_7682#1 GTACAGGTTTATATGAATTATGGCGTACTGGTCGTTATAAAAGTTATCCACCTGGTATGC 240 ************************************************************ consensus_7682#0 TAATTGATTTGATTGCTAGAATATTAGCTTTGGTTCCACCATGGACTCGAATTTATCGTA 147 consensus_7682#1 TAATTGATTTGATTGCTAGAATATTAGCTTTGGTTCCACCATGGACTCGAATTTATCGTA 300 ************************************************************ consensus_7682#0 TTCAAAGAGATATTCCTATGCCATTGGTAACTAGTGGTGTGGAACATGGTAATTTACGTG 207 consensus_7682#1 TTCAAAGAGATATTCCTATGCCATTGGTAACTAGTGGTGTGGAACATGGTAATTTACGTG 360 ************************************************************ consensus_7682#0 AACTTGTATTAGCTCGAATGGAAGAACTAGGTGCTAGCTGTCGTGATGTTCGAACACGTG 267 consensus_7682#1 AACTTGTATTAGCTCGAATGGAAGAACTAGGTGCTAGCTGTCGTGATGTTCGAACACGTG 420 ************************************************************ consensus_7682#0 AAGTTGGCATACAAGAAATACATTCACGTGTAAAACCATATCAGGTTGAACTTGTTCGTA 327 consensus_7682#1 AAGTTGGCATACA----------------------------------------------- 433 ************* consensus_7682#0 GAGATTATGTTGCAAATGGTGGTTGGGAGACATTTTTAGCCTATGAGGATCCATATCAAG 387 consensus_7682#1 ------------------------------------------------------------ consensus_7682#0 ATATATTGATCGGTTTATTACGTTTAAGAAAGTGTTCACTGCAAACATTTAGACCAGAAT 447 consensus_7682#1 ------------------------------------------------------------ consensus_7682#0 TAATCGTTAAAACACATAATAATGATGATGACGATGTTCAAGGTAATAAAGATCCTCGTT 507 consensus_7682#1 ------------------------------------------------------------ consensus_7682#0 GTTCCATTGTGCGTGAATTACATGTATATGGTAGTGCTGTTCCAGTGGCTGCTAGGGATC 567 consensus_7682#1 ------------------------------------------------------------ consensus_7682#0 CCACGAAGTTTCAACATCAAGGTTTCGGAACTTTACTAATGGAAGAAGCAGAACGTATAG 627 consensus_7682#1 ------------------------------------------------------------ consensus_7682#0 CTAAATATGAACATGGTTCATTGAAGATTGCAGTTATATCCGGTGTGGGGACTAGAAACT 687 consensus_7682#1 ------------------------------------------------------------ consensus_7682#0 ACTATCGAAAATTGGGTTATAAATTAGAG 716 consensus_7682#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||