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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 629 fasta sequence
[TTTCGGCAGCBCAAAGGACGTCCTAGAAAAAACAGACCCATGGATTCAGATGATTTGCCATGGGGTTATAGTGTGAAGAAACCTCGTAAACCAATGTTGAAGCGGAAAATTTGTCAAACACCAGGTGTCAGTGATATCAAAGAGTGCGCCT-TTTAGCACATAGTTTCTAATTTATACGGTAACGTTCAACCTGMGMATATCCCTGGTGCTGAAGTAATAC-CTAAACGACGTCGAGGCCGTCCTCCGACAAAAAATCGCATTATTGTATCTCTTCCA-CCCCATCTTCTCCTTATTTTTCGAAT-CAACCAATTTTAGTCCTATTTCTT-AAATGTTTCTATTCCCCTAACAAACTCTCCACCTAAACC-TTATCGAT-AAAGTGTCTATGACTGAAAGTGAACCTTCGGGACTATATCCAGCTAACTCCATTCCAACTAAAATAGAGTCCTTTGTTGCGGGAAAGTTGTATTTTCTGAAAGTCTGGACATTTTAAACCGATAACAGTTATAGTTTTTTTTATAGTGGTGGTCAGTCGGCCAACTGGAATAATATTGTGGACAAGTTGGTGGAATGCAAATCCTCTTCTCAAATCTTCTGATCAATATATGAAACTGTTCTCATTTGCGGTTGCA]
[+] EMBL AI478028 [TTTCGGCAGCBCAAAGGACGTCCTAGAAAAAACAGACCCATGGATTCAGATGATTTGCCATGGGGTTATAGTGTGAAGAAACCTCGTAAACCAATGTTGAAGCGGAAAATTTGTCAAACACCAGGTGTCAGTGATATCAAAGAGTGCGCCT TTTAGCACATAGTTTCTAATTTATACGGTAACGTTCAACCTGMGMATATCCCTGGTGCTGAAGTAATAC CTAAACGACGTCGAGGCCGTCCTCCGACAAAAAATCGCATTATTGTATCTCTTCCA CCCCATCTTCTCCTTATTTTTCGAAT CAACCAATTTTAGTCCTATTTCTT AAATGTTTCTATTCCCCTAACAAACTCTCCACCTAAACC TTATCGAT AAAGTGTCTATGACTGAAAGTGAACCTTCGGGACTATATCCAGCTAACTCCATTCCAACTAAAATAG ]
[+] EMBL AI618834 [ TTATAGTGTGAAGAAACCTCGTAAACCAATGTTGAAGCGGAAAATTTGTCAAACACCAGGTGTCAGTGATATCAAAGA CACATCTTTAGCACATAG TTCTAATTTATACGGTAACGTTCAACCAG G A GTCCCTGGTGCTGAAGTAATACACTAAACGACGTCGAGGCCGTCCTCCGACAAAAAATCGCATTATTGTATCTCTTCCACCCCCATCTTCTCCTTATTTTTCGAATCCAACCAATTTTAGTCCTATTTCTTCAAATGTTTCTATTCCCCTACCAACCTCTCCACCTAAACCTTTATCGATCAAAGTGTCTATGACTGAAAGTGAACCTTCGGGACTATATCCAGCTAACTCCATTCCAACTAAAATAGAGTCCTTTGTTGCGGGAAAGTTGTATTTTCTGAAAGTCTGGACATTTTAAACCGATAACAGTTATAGTTTTTTTTATAGTGGTGGTCAGTCGGCCAACTGGAATAATATTGTGGACAAGTTGGTGGAATGCAAATCCTCTTCTCAAATCTTCTGATCAATATATGAAACTGTTCTCATTTGCGGTTGCA]
consensusID : consensus_7684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence
[GTGAAGAAACCTCGTAAACCAATGTTGAAGCGGAAAATTTGTCAAACACCAGGTGTCAGTGATATCAAAGACACATCTTTAGCACATAGTTCTAATTTATACGGTAACGTTCAACCAGGAGTCCCTGGTGCTGAAGTAATACCTAAACGACGTCGAGGCCGTCCTCCGACAAAAAATCGCATTATTGTATCTCTTCCACCCCCATCTTCTCCTTATTTTTCGAATCCAACCAATTTTAGTCCTATTTCTTCAAATGTTTCTATTCCCCTACCAACCTCTCCACCTAAACCTTTATCGATCTAAGTGTCTATGACTGAAAGTGAACCTTCGGGACTATATCCAGCTAACTCCATTCCAACTAAAATAGAGTCCTTTGTTGCGGAAAAAGTTGATATTTCTGAAAAGTCTGAACATTTAAAACCGAATAACAGTAATAGTATTATTAATAGTAGTAGTACAGTCGACCAAACTGAAAATAATATTGTGAAACATGTTGGTGAAATGCAAATTCCTTCTTCAACAAATTCATCTGAATCAAATAATATTGAAAACTGATTCATCATTTAGACTGTTAGCTACCTTT]
[+] EMBL CD169796 [GTGAAGAAACCTCGTAAACCAATGTTGAAGCGGAAAATTTGTCAAACACCAGGTGTCAGTGATATCAAAGACACATCTTTAGCACATAGTTCTAATTTATACGGTAACGTTCAACCAGGAGTCCCTGGTGCTGAAGTAATACCTAAACGACGTCGAGGCCGTCCTCCGACAAAAAATCGCATTATTGTATCTCTTCCACCCCCATCTTCTCCTTATTTTTCGAATCCAACCAATTTTAGTCCTATTTCTTCAAATGTTTCTATTCCCCTACCAACCTCTCCACCTAAACCTTTATCGATCTAAGTGTCTATGACTGAAAGTGAACCTTCGGGACTATATCCAGCTAACTCCATTCCAACTAAAATAGAGTCCTTTGTTGCGGAAAAAGTTGATATTTCTGAAAAGTCTGAACATTTAAAACCGAATAACAGTAATAGTATTATTAATAGTAGTAGTACAGTCGACCAAACTGAAAATAATATTGTGAAACATGTTGGTGAAATGCAAATTCCTTCTTCAACAAATTCATCTGAATCAAATAATATTGAAAACTGATTCATCATTTAGACTGTTAGCTACCTTT]
consensusID : consensus_7684#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 581 fasta sequence
[GAAGTTCAATGGAAGGTCTTCGGACTAGATATGCAAACGGATCACTATTATCAAGTGGTGTTACTAATTCAAATATGTTAGTTGGTGATAAATCATCAGTTTCTGATGTAGAAACAGATAAAACAAGTAATTCGATCTATCGACGATTTAAAACAAATACAGAAATAAATACAGAAAACCCTATTTGTGTTGTATGTGGCCAATTAGCTACGAATTATATACGTTGTTCTGAGTGTAAATTAATTGGTCATCCAAAATGTTTGGATATACCTGATTCTATGCTATCAGGTGTGAAAAGCTATGATTGGACATGTTTAGAGTGTAAACGGTGTGTGGAATGTAACGATTCAGGTCAGGAAGATCAAATGATGTTTTGCGATCGTTGTGATCGAGGTTATCATGCATTTTGTGTTGGCTTAGGACGAATTCCTAATGGAAATTGGGAATGTTTATTATGTGAATCATTGCCAACTCCTCCTAGGAAAGGACGTCCTAGAAAAAACAGACCCAAGGATTCAGATGATTTGCCATGGGGTTATAGTGTGAAGAAACCTCGTAAACCAATGTTGAAGCGGAAAATT]
[+] EMBL CD188061 [GAAGTTCAATGGAAGGTCTTCGGACTAGATATGCAAACGGATCACTATTATCAAGTGGTGTTACTAATTCAAATATGTTAGTTGGTGATAAATCATCAGTTTCTGATGTAGAAACAGATAAAACAAGTAATTCGATCTATCGACGATTTAAAACAAATACAGAAATAAATACAGAAAACCCTATTTGTGTTGTATGTGGCCAATTAGCTACGAATTATATACGTTGTTCTGAGTGTAAATTAATTGGTCATCCAAAATGTTTGGATATACCTGATTCTATGCTATCAGGTGTGAAAAGCTATGATTGGACATGTTTAGAGTGTAAACGGTGTGTGGAATGT ]
[-] EMBL CD189931 [ CATCAGTTTCTGATGTAGAAACAGATAAAACAAGTAATTCGATCTATCGACGATTTAAAACAAATACAGAAATAAATACAGAAAACCCTATTTGTGTTGTATGTGGCCAATTAGCTACGAATTATATACGTTGTTCTGAGTGTAAATTAATTGGTCATCCAAAATGTTTGGATATACCTGATTCTATGCTATCAGGTGTGAAAAGCTATGATTGGACATGTTTAGAGTGTAAACGGTGTGTGGAATGTAACGATTCAGGTCAGGAAGATCAAATGATGTTTTGCGATCGTTGTGATCGAGGTTATCATGCATTTTGTGTTGGCTTAGGACGAATTCCTAATGGAAATTGGGAATGTTTATTATGTGAATCATTGCCAACTCCTCCTAGGAAAGGACGTCCTAGAAAAAACAGACCCAAGGATTCAGATGATTTGCCATGGGGTTATAGTGTGAAGAAACCTCGTAAACCAATGTTGAAGCGGAAAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7684#0 TTTCGGCAGCBCAAAGGACGTCCTAGAAAAAACAGACCCATGGATTCAGATGATTTGCCA 60
consensus_7684#1 ------------------------------------------------------------
consensus_7684#2 ------------------------------------------------------------
consensus_7684#0 TGGGGTTATAGTGTGAAGAAACCTCGTAAACCAATGTTGAAGCGGAAAATTTGTCAAACA 120
consensus_7684#1 ------------GTGAAGAAACCTCGTAAACCAATGTTGAAGCGGAAAATTTGTCAAACA 48
consensus_7684#2 ----GAAGTTCAATGGAAGGTCTTCG-GACTAGATATGCAAACGGATCACTATT--ATCA 53
** * * *** * ** * ** **** * * * * **
consensus_7684#0 CCAGGTGTCAGTGATATCAAAGAGTGCGCCTTTTAGCACATAGTTTCTAATTTATACGGT 180
consensus_7684#1 CCAGGTGTCAGTGATATCAAAGA-CACATCTTT-AGCACATAGTT-CTAATTTATACGGT 105
consensus_7684#2 AGTGGTGTTACTAAT-TCAAATATGTTAGTTGGTGATAAATCATCAGTTTCTGATGTAGA 112
***** * * ** ***** * * * ** * * * ** *
consensus_7684#0 AACGTTCAACCTGMGMATATC--CCTGGTGCTGAAGTAATACCTAAACGACGTCGAGGCC 238
consensus_7684#1 AACGTTCAACCAG---GAGTC--CCTGGTGCTGAAGTAATACCTAAACGACGTCGAGGCC 160
consensus_7684#2 AACAGATAAAACAAGTAATTCGATCTATCGACGATTTAAAACAAATACAGAAATAAAT-- 170
*** ** ** ** * ** *** ** * ** *
consensus_7684#0 GTCCTCCGACAAAAAATCGCATTATTGTATCTCTTCCACCCC-ATCTTCTCCTTATTTTT 297
consensus_7684#1 GTCCTCCGACAAAAAATCGCATTATTGTATCTCTTCCACCCCCATCTTCTCCTTATTTTT 220
consensus_7684#2 --------ACAGAAAACCCTAT--TTGTGTTGTATGTGGCCA-ATTAGCTACGAATTATA 219
*** **** * ** **** * * ** ** ** * *** *
consensus_7684#0 CGAATC-AACCAATTTTAGTCCTATT--TCTT---AAATGTTTCTATTCCCCTAACAAAC 351
consensus_7684#1 CGAATCCAACCAATTTTAGTCCTATT--TCTTC--AAATGTTTCTATTCCCCTACCAACC 276
consensus_7684#2 TACGTTGTTCTGAGTGTAAATTAATTGGTCATCCAAAATGTTTGGATATACCTGAT--TC 277
* * * * ** *** ** * ******** ** *** *
consensus_7684#0 TCTCCACCTAAACCTT-ATCGATA-AAGTGTCTATGACTGAAA-GTGAAC--CTTCGGGA 406
consensus_7684#1 TCTCCACCTAAACCTTTATCGATCTAAGTGTCTATGACTGAAA-GTGAAC--CTTCGGGA 333
consensus_7684#2 TATGCTATCAGGTGTGAAAAGCTATGATTGGACATGTTTAGAGTGTAAACGGTGTGTGGA 337
* * * * * * * * * ** *** * * ** *** * ***
consensus_7684#0 CTATATCCAGCTAACTCCATTCCAACTAAAATAGAGTCCT----TTGTTGCGGGAAA-GT 461
consensus_7684#1 CTATATCCAGCTAACTCCATTCCAACTAAAATAGAGTCCT----TTGTTGCGGAAAAAGT 389
consensus_7684#2 ATGTAACGATTCAGGTCAGGA--AGATCAAATGATGTTTTGCGATCGTTGTGATCGAGGT 395
* ** * * * ** * * **** ** * * **** * * **
consensus_7684#0 TG-----TATTTTCTGAAAGTCT-GGAC--ATTTTAAACCGA-TAACAGTTATAGTTTTT 512
consensus_7684#1 TGA----TATTTCTGAAAAGTCT-GAAC--ATTTAAAACCGAATAACAGTAATAGTATTA 442
consensus_7684#2 TATCATGCATTTTGTGTTGGCTTAGGACGAATTCCTAATGGA-AATTGGGAATGTTTATT 454
* **** * * * ** *** ** ** * * ** * *
consensus_7684#0 TTTATAGTGGTGGT-CAGTCGGCCAA-CTGGAA-TAATATTGTGGA-CAAGTTGGT---G 565
consensus_7684#1 TTAATAGTAGTAGTACAGTCGACCAAACTGAAAATAATATTGTGAAACATGTTGGT---G 499
consensus_7684#2 ATGTGAATCATTGCCAACTCCTCCTA---GGAAAGGACGTCCTAGAAAAAACAGACCCAA 511
* * * * * * ** ** * * ** * * * * * *
consensus_7684#0 GAATGCAAATCCTCT-TCTCAAA----TCTTCTGATC-----AATATATGAAACTGTTC- 614
consensus_7684#1 AAATGCAAATTCCTT-CTTCAACAAATTCATCTGAATCAAATAATATTGAAAACTGATTC 558
consensus_7684#2 GGATTCAGATGATTTGCCATGGGGTTATAGTGTGAAGA----AACCTCGTAAACCAATGT 567
** ** ** * * * *** ** * **** *
consensus_7684#0 -TCATTTGCGGTTGCA--------- 629
consensus_7684#1 ATCATTTAGACTGTTAGCTACCTTT 583
consensus_7684#2 -TGAAGCGGAAAATT---------- 581
* *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||