These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7685#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 864 fasta sequence [CGGCACGCAGGGANCAACACAGTAACTGGCCTTCAAACCTACGAAAGGATAAACGTTGTGGTTATTCTATTCTTGGATTTAGATATAACTTGTGAATCTTATAGTAATTGTAGTTGAAAACTTCTTTTCGTAGCTTGGTTTAATTCCTTTAGTTAATTGTGCTAATAAAGTGAACTAACACCTAAATATCGTGTTTACACACTATAAACAAACCTTTTACCGACTGTTTGCTGTAATTCTACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACAAGCTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGACAAACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAGATGAAGATAATGAATGGAAGACGAGATATTTAATTCAGAAAGAAATGAACGACTACTACAAAAGGGCATTCTTCTTCTGCGATCAGCAAATACCGAAGGCAAAAGCACTTCAACGAACAATAAACCGTGCTGTTAGAAGGGGCTCAAAATTATCTAGCTACATGGACCTTGACGAAGATTCGGTTCAAGAACTTGAGGACTATCGTACATATATAATTAAATTATGTCGCGAGCTGGAATCCAGGATCGATCAAGAAGGAAAGAAATCGAACATTTAATTCTAAATATGGTCTGGGAAGTAAAACAAGTGGAGTGAAGAAACTGCCTCCAATGCATTTCTGACTGACATCACTGAAAACAATTATAAAACTATGTATGTTCGATTAAGTAGAA--GAAA-TAAATAAATCTTTAGCTTAATATTAAACACACACGATGTGTAAAACGAA] [+] EMBL CD081773 [CGGCACGCAGGGANCAACACAGTAACTGGCCTTCAAACCTACGAAAGGATAAACGTTGTGGTTATTCTATTCTTGGATTTAGATATAACTTGTGAATCTTATAGTAATTGTAGTTGAAAACTTCTTTTCGTAGCTTGGTTTAATTCCTTTAGTTAATTGTGCTAATAAAGTGAACTAACACCTAAATATCGTGTTTACACACTATAAACAAACCTTTTACCGACTGTTTGCTGTAATTCTACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACAAGCTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGACAAACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAGATGAAGATAATGAATGGAAGACGAGATATTTAATTCAGAAAGAAATGAACGACTACTACAAAAGGGCATTCTTCTTCTGCGATCAGCAAATACCGAAGGCAAAAGCACTTCAACGAACAATAAACCGTGCTGTTAGAAGGGGCTCAAAATTATCTAGCTACATGGACCTTGACGAAGATTCGGTTCAAGAACTTGAGGACTATCGTACATATATAATTAAATTATGTCGCGAGCTGGAATCCAGGATCGATCAAGAAGGAAAGAAATCGAACATTTAATTCTAAATATGGTCTGGGAAGTAAAACAAGTGGAGTGAAGAAACTGCCTCCAATGCATTTCTGACTGACATCACTGAAAACAATTATAAAACTATGTATGTTCGATTAAGTAGAA GAAA TAAATAAATCTTTA ] [-] EMBL CD075504 [ CTTTAGTTAATTGTGCTAATAAAGTGAACTAACACCTAAATATCGTGTTTACACACTATAAACAAACCTTTTACCGACTGTTTGCTGTAATTCTACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACAAGCTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGACAAACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAGATGAAGATAATGAATGGAAGACGAGATATTTAATTCAGAAAGAAATGAACGACTACTACAAAAGGGCATTCTTCTTCTGCGATCAGCAAATACCGAAGGCAAAAGCACTTCAACGAACAATAAACCGTGCTGTTAGAAGGGGCTCAAAATTATCTAGCTACATGGACCTTGACGAAGATTCGGTTCAAGAACTTGAGGACTATCGTACATATATAATTAAATTATGTCGCGAGCTGGAATCCAGGATCGATCAAGAAGGAAAGAAATCGAACATTTAATTCTAAATATGGTCTGGGAAGTAAAACAAGTGGAGTGAAGAAACTGCCTCCAATGCATTTCTGACTGACATCACTGAAAACAATTATAAAACTATGTATGTTCGATTAAGTAGAA GAAATTGAAT AATCTTTAGCTTAA ] [+] EMBL CD190803 [ TCTACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACAAGCTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGACAAACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAGATGAAGATAATGAATGGAAGACGAGATATTTAATTCAGAAAGAAATGAACGACTACTACAAAAGGGCATTCTTCTTCTGCGATCAGCAAATACC ] [+] EMBL AI390067 [ CTAAATATGGTCTGGGAAGTAAAACAAGTGGAGTGAAGAAACTGCCTCCAATGCATTTCTGACTGACATCACTGAAAACAATTATAAAACTATGTATGCTCGATTAAGTAGAAGTGAAT TAAATAAATCTTTAGCCTTTTATTAAACACACACGATGTGTAAAACGAA] consensusID : consensus_7685#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [CACCTAAATATCGTGTTTACACACTATAAACAAACCTTTTACCGACTGTTTGCTGTAATTCTACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACAAGCTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGACAAACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAGATGAAGGTAATTAAGAAGATTATCCCAAGTCCGTTTAGATNATGAATGG] [+] EMBL CD064136 [CACCTAAATATCGTGTTTACACACTATAAACAAACCTTTTACCGACTGTTTGCTGTAATTCTACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACAAGCTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGACAAACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAGATGAAGGTAATTAAGAAGATTATCCCAAGTCCGTTTAGATNATGAATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7685#0 CGGCACGCAGGGANCAACACAGTAACTGGCCTTCAAACCTACGAAAGGATAAACGTTGTG 60 consensus_7685#1 ------------------------------------------------------------ consensus_7685#0 GTTATTCTATTCTTGGATTTAGATATAACTTGTGAATCTTATAGTAATTGTAGTTGAAAA 120 consensus_7685#1 ------------------------------------------------------------ consensus_7685#0 CTTCTTTTCGTAGCTTGGTTTAATTCCTTTAGTTAATTGTGCTAATAAAGTGAACTAACA 180 consensus_7685#1 ----------------------------------------------------------CA 2 ** consensus_7685#0 CCTAAATATCGTGTTTACACACTATAAACAAACCTTTTACCGACTGTTTGCTGTAATTCT 240 consensus_7685#1 CCTAAATATCGTGTTTACACACTATAAACAAACCTTTTACCGACTGTTTGCTGTAATTCT 62 ************************************************************ consensus_7685#0 ACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACAAG 300 consensus_7685#1 ACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACAAG 122 ************************************************************ consensus_7685#0 CTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGACA 360 consensus_7685#1 CTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGACA 182 ************************************************************ consensus_7685#0 AACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAGAT 420 consensus_7685#1 AACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAGAT 242 ************************************************************ consensus_7685#0 GAAGATAATGAATGGAAGACGAGATATTTAATTCAGAAAGA-AATGAACGACTACTACAA 479 consensus_7685#1 GAAGGTAATTAA--GAAGATT--ATCCCAAGTCCGTTTAGATNATGAATGG--------- 289 **** **** ** ***** ** * * * *** ***** * consensus_7685#0 AAGGGCATTCTTCTTCTGCGATCAGCAAATACCGAAGGCAAAAGCACTTCAACGAACAAT 539 consensus_7685#1 ------------------------------------------------------------ consensus_7685#0 AAACCGTGCTGTTAGAAGGGGCTCAAAATTATCTAGCTACATGGACCTTGACGAAGATTC 599 consensus_7685#1 ------------------------------------------------------------ consensus_7685#0 GGTTCAAGAACTTGAGGACTATCGTACATATATAATTAAATTATGTCGCGAGCTGGAATC 659 consensus_7685#1 ------------------------------------------------------------ consensus_7685#0 CAGGATCGATCAAGAAGGAAAGAAATCGAACATTTAATTCTAAATATGGTCTGGGAAGTA 719 consensus_7685#1 ------------------------------------------------------------ consensus_7685#0 AAACAAGTGGAGTGAAGAAACTGCCTCCAATGCATTTCTGACTGACATCACTGAAAACAA 779 consensus_7685#1 ------------------------------------------------------------ consensus_7685#0 TTATAAAACTATGTATGTTCGATTAAGTAGAAGAAATAAATAAATCTTTAGCTTAATATT 839 consensus_7685#1 ------------------------------------------------------------ consensus_7685#0 AAACACACACGATGTGTAAAACGAA 864 consensus_7685#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||