These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7687#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [TGCCGTCCGAATTGTGAAAATTCACTCCAACAAGCTTTGAAATCTTTTAAGATTGCTTCCTGCACATTTGATTACATATCTTCAGATTTGATGTCTGGGGTTAAAGATCCTCTGCCAGATTTGACTCCATCATCACTAACGCTGTTTAGCAATCTTATGCTTGCTCAAGCATATGAATGTGTCCTCTCGAAAGCTGAAAAAGATAAGAAAAAGCCTGGGATTTTAGCAAGAATAGCATCAACCTTGACTAATCTTTACGAAGACTGCCTATCAGAGTGTTCAGGTGGAGCTAAAAATATTGTTCCAAAAGATTGGTCTGGTGTATTAAGCATGAAAAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGACAATGATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAA] [+] EMBL CD094040 [TGCCGTCCGAATTGTGAAAATTCACTCCAACAAGCTTTGAAATCTTTTAAGATTGCTTCCTGCACATTTGATTACATATCTTCAGATTTGATGTCTGGGGTTAAAGATCCTCTGCCAGATTTGACTCCATCATCACTAACGCTGTTTAGCAATCTTATGCTTGCTCAAGCATATGAATGTGTCCTCTCGAAAGCTGAAAAAGATAAGAAAAAGCCTGGGATTTTAGCAAGAATAGCATCAACCTTGACTAATCTTTACGAAGACTGCCTATCAGAGTGTTCAGGTGGAGCTAAAAATATTGTTCCAAAAGATTGGTCTGGTGTATTAAGCATGAAAAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGACAATGATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAA] consensusID : consensus_7687#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 292 fasta sequence [CTAAAAATGTTGTTCCAAAAGATTGGTCTGGTGTATTAAGCATGAAAAAAGGTTTGTATGAAGCTCTGACCCAATATCATCAGTCTAAAGCTTGTTGCGAAGCCAAGCAGTATGGGGAACAAGTAGCTCGCATATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGACAATGATCATATATATCACGAAAAGGTACCGCCTAGAGGAAGTCTTGCTCCTGT] [+] EMBL CD191994 [CTAAAAATGTTGTTCCAAAAGATTGGTCTGGTGTATTAAGCATGAAAAAAGGTTTGTATGAAGCTCTGACCCAATATCATCAGTCTAAAGCTTGTTGCGAAGCCAAGCAGTATGGGGAACAAGTAGCTCGCATATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGACAATGATCATATATATCACGAAAAGGTACCGCCTAGAGGAAGTCTTGCTCCTGT] [+] EMBL CD191947 [ AGGTTTGTATGAAGCTCTGACCCAATATCATCAGTCTAAAGCTTGTTGCGAAGCCAAGCAGTATGGGGAACAAGTAGCTCGCATATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGACAATGATCATATATATCACGAAAAGGTACCGCCTAGAGGAAGTCTTGCTCCTGT] [+] EMBL CD192028 [ AGGTTTGTATGAAGCTCTGACCCAATATCATCAGTCTAAAGCTTGTTGCGAAGCCAAGCAGTATGGGGAACAAGTAGCTCGCATATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGACAATGATCATATATATCACGAAAAGGTACCGCCTAGAGGAAGTCTTGCTCCTGT] [+] EMBL CD192272 [ AGGTTTGTATGAAGCTCTGACCCAATATCATCAGTCTAAAGCTTGTTGCGAAGCCAAGCAGTATGGGGAACAAGTAGCTCGCATATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGACAATGATCATATATATCACGAAAAGGTACCGCCTAGAGGAAGTCTTGCTCCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7687#0 TGCCGTCCGAATTGTGAAAATTCACTCCAACAAGCTTTGAAATCTTTTAAGATTGCTTCC 60 consensus_7687#1 ------------------------------------------------------------ consensus_7687#0 TGCACATTTGATTACATATCTTCAGATTTGATGTCTGGGGTTAAAGATCCTCTGCCAGAT 120 consensus_7687#1 ------------------------------------------------------------ consensus_7687#0 TTGACTCCATCATCACTAACGCTGTTTAGCAATCTTATGCTTGCTCAAGCATATGAATGT 180 consensus_7687#1 -------------------------CTAAAAATGT------TGTTCCAAAAGATTGGTCT 29 ** *** * ** ** * * ** * * consensus_7687#0 GTCCTCTCGAAAGCTGAAAAAGATAAGAAAAAGCCTGGGATTTTAGCAAGAATAGCATCA 240 consensus_7687#1 GGTGTATTAAGCATGAAAAAAGGTTTGTATGAAGCTCTGACCC-------AATATCATCA 82 * * * * ****** * * * * ** ** **** ***** consensus_7687#0 ACCTTGACTAATCTTTACGAAGACTGCCTATCAGAGTGTTCAGGTGGAGCTAAAAATATT 300 consensus_7687#1 GTCTAAA--GCTTGTTGCGAAG----CCAAGCAGTATG-------GGGAACAAGTAGCTC 129 ** * * ** ***** ** * *** ** ** ** * * consensus_7687#0 GTTCCAAAAGATTGGTCTGGTGTATTAAGCATGAAAAAAGGTGTTGCTCGAAGTAGTTGT 360 consensus_7687#1 G---CATATCATTTGCCTA-TGAGCTAATCA------AAGGTGTTGCTCGAAGTAGTTGT 179 * ** * *** * ** ** *** ** *********************** consensus_7687#0 TTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGAC 420 consensus_7687#1 TTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGAC 239 ************************************************************ consensus_7687#0 AATGATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAA 480 consensus_7687#1 AATGATCAT------ATATATCACGAAAAGGTACCGCCTAGAGGAAGTCTTGCTCCTGT- 292 ********* ** * ****** ** ** * * ** * consensus_7687#0 AGAATTTAGTGGAA 494 consensus_7687#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||