These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 457 fasta sequence [TCCGTAGAGGTAGTCATTGGGATGTGTTTTAGCTGAGCTTTTCCTCGGCTGGCCTTTATATCCTGGTTCATCTGAATATGATCAAATGAGATACATAGTAGAGACTCAAGGTTTACCCCCTTCTGATATGTTAAAAAACGCTGGGAAATGCAACACATTTTTTGTACGTGATCATTATCGATGTGATTGGCGGTTAAAAACTCCGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAAAGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTCTGCGTCTGACGAATCAGATCTTGATATTGTCGATCGCCAGCAATTTACTTATCTTTTAACGGAGATGCTAAAAATGCGTCCATGTGATCGAATAACACCTGATATAGCCCTTAAACATTCGTTCGTAACTATGACTCACCTTCACTGTCAGCCTTTC] [+] EMBL CD152121 [TCCGTAGAGGTAGTCATTGGGATGTGTTTTAGCTGAGCTTTTCCTCGGCTGG CTTTATATCCTGGTTCATCTGAATATGATCAAATGAGATACATAGTAGAGACTCAAGGTTTACCCCCTTCTGATATGTTAAAAAACGCTGGGAAATGCAACACATTTTCTGTACGTGATCATTATCGATGTGATTGGCGGTTAAAAACTCCGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAAAGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTCTGCGTCTGACGAATCAGATCTTGATATTGTCGATCGCCAGCAATTTACTTATCTTTTAACGGAGATGCTAAAAATGCGTCCATGTGATCGAATAACACCTGATATA ] [+] EMBL CD152045 [ GTGTTTTAGCTGAGCTTTTCCTCGGCTGGCCTTTATATCCTGGTTCATCTGAATATGATCAAATGAGATACATAGTAGAGACTCAAGGTTTACCCCCTTCTGATATGTTAAAAAACGCTGGGAAATGCAACACATTTTTTGTACGTGATCATTATCGATGTGATTGGCGGTTAAAAACTCCGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAAAGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTCTGCGTCTGACGAATCAGATCTTGATATTGTCGATCG ] [+] EMBL CD152073 [ GTGTTTTAGCTGAGCTTTTCCTCGGCTGGCCTTTATATCCTGGTTCATCTGAATATGATCAAATGAGATGCATAGTAGAGACTCAAGG TTACCCCCTTCTGATATGTTAAAAAACGCTGGGACATGCAACACATTTTTCGTACGTGATCATTATCGATGTGATTGGCGGTTACAAACTCCGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCATAAGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTCTGCGTC ] [-] EMBL CD116815 [ TTATATCCTGGTTCATCTGAATATGATCAAATGAGATACATAGTAGAGACTCAAGGTTTACCCCCTTCTGATATGTTAAAAAACGCTGGGAAATGCAACACATTTTTTGTACGTGATCATTATCGATGTGATTGGCGGTTAAAAACTCCGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAAAGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTCTGCGTCTGACGAATCAGATCTTGATATTGTCGATCGCCAGCAATTTACTTATCTTTTAACGGAGATGCTAAAAATGCGTCCATGTGATCGAATAACACCTGATATAGCCCTTAAACATTCGTTCGTAACTATGACTCACCTTCACTGTCAGCCTTTC] consensusID : consensus_7690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [CCCGGTACCCTGGAATTCAGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAAAGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTCTGCGTCTGACGAATCAGATCTTGATATTGTCGATCGCCAGCAATTTACTTATCTTTTAACGGAGATGCTAAAAATGCGTCCATGTG] [+] EMBL CD168053 [CCCGGTACCCTGGAATTCAGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAAAGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTCTGCGTCTGACGAATCAGATCTTGATATTGTCGATCGCCAGCAATTTACTTATCTTTTAACGGAGATGCTAAAAATGCGTCCATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7690#0 TCCGTAGAGGTAGTCATTGGGATGTGTTTTAGCTGAGCTTTTCCTCGGCTGGCCTTTATA 60 consensus_7690#1 ------------------------------------------------------------ consensus_7690#0 TCCTGGTTCATCTGAATATGATCAAATGAGATACATAGTAGAGACTCAAGGTTTACCCCC 120 consensus_7690#1 ------------------------------------------------------------ consensus_7690#0 TTCTGATATGTTAAAAAACGCTGGGAAATGCAACACATTTTTTGTACGTGATCATTATCG 180 consensus_7690#1 ------------------------------------------------------------ consensus_7690#0 ATGTGATTGGCGGTTAAAAACTCCGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAA 240 consensus_7690#1 -----CCCGGTACCCTGGAATTCAGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAA 55 ** ** ** ************************************ consensus_7690#0 AGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTC 300 consensus_7690#1 AGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTC 115 ************************************************************ consensus_7690#0 TGCGTCTGACGAATCAGATCTTGATATTGTCGATCGCCAGCAATTTACTTATCTTTTAAC 360 consensus_7690#1 TGCGTCTGACGAATCAGATCTTGATATTGTCGATCGCCAGCAATTTACTTATCTTTTAAC 175 ************************************************************ consensus_7690#0 GGAGATGCTAAAAATGCGTCCATGTGATCGAATAACACCTGATATAGCCCTTAAACATTC 420 consensus_7690#1 GGAGATGCTAAAAATGCGTCCATGTG---------------------------------- 201 ************************** consensus_7690#0 GTTCGTAACTATGACTCACCTTCACTGTCAGCCTTTC 457 consensus_7690#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||