These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_770#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [TCAAACTTTATGATGAGTCGGCCTTTGTCGAACGGGTTTTTGTATCTTGGCATTCCCTCTCCTTCAATCGCACGGAAATCCTTATTAGTATACACCTCACCGGGTCTGGAATTTATCACTAGTGTCCGATCATCTAATGTTCGTATCGTCCGCTGAAAGCCACACAAGGCTTCAGAGAGTGATAATTCTATGGTGTGTATCAAGTCGTTTCGACGTCTGATGAAACGGCTATGCCACCACGACCTTGACACTGATCACAAATAACTTTTCGCGTAACACCAAGTTTTCTAACACTGCCATTGTAGAGCTCTTCTAAAGTCACTGATAACTGGTGCACACAGTCTTTTCCGCGACGGNGTCCGCGAGAACGACCACCCCCGAAGACATTTGGAAATATCCATTGGGTCAGCCATTCCACCTGACTCAACTCCACCCTCCTTAATTCCTTGCTCGCCTCTTGTATCATATATTTCTCTTTTTTCAGGGTCACACAGAACCATAAATGCTTGAGAAAATTCTTTGAACTTATCTGCGCTATCCGGATTTTTGTCTGGGTGATACTTAAAGGCCTTTTGTGCGGTAGCCTTTTTTAATTTCCGCCTCAGTTGCGGGCCCAGGGAACACCGAGCAGATCATAGGACTTCCCTTCCCTTACCATCTCTGTAAAAACCCGCTCTACTG] [+] EMBL CD141808 [TCAAACTTTATGATGAGTCGGCCTTTGTCGAACGGGTTTTTGTATCTTGGCATTCCCTCTCCTTCAATCGCACGGAAATCCTTATTAGTATACACCTCACCGGGTCTGGAATTTATCACTAGTGTCCGATCATCTAATGTTCGTATCGTCCGCTGAAAGCCACACAAGGCTTCAGAGAGTGATAATTCTATGGTGTGTATCAAGTCGTTTCGACGTCTGATGAAACGGCTATGCCACCACGACCTTGACACTGATCACAAATAACTTTTCGCGTAACACCAAGTTTTCTAACACTGCCATTGTAGAGCTCTTCTAAAGTCACTGATAACTGGTGCACACAGTCTTTTCCGCGACGGNGTCCGCGAGAACGACCACCCCCGAAGACATTTGGAAATATCCATTGGGTCAGCCATTCCACCTGACTCAACTCCACCCTCCTTAATTCCTTGCTCGCCTCTTGTATCATATATTTCTCTTTTTTCAGGGTCACACAGAACCATAAATGCTTGAGAAAATTCTTTGAACTTATCTGCGCTATCCGGATTTTTGTCTGGGTGATACTTAAAGGCCTTTTGTGCGGTAGCCTTTTTTAATTTCCGCCTCAGTTGCGGGCCCAGGGAACACCGAGCAGATCATAGGACTTCCCTTCCCTTACCATCTCTGTAAAAACCCGCTCTACTG] consensusID : consensus_770#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [ATACTCTGAATTTGTGTGAATCGTTGTTTTCTGCGAGAATTAAGACGATATGACGATTACTGAAGTATTATCGCATGAGATAGCTGCTTTTTTTAGTAATTAACGAGTAATGTTTGTAGTGATTTATGTTCCAGAGACATTTCGGTCGACTTAAGTGAGGCGTTTCAACGCATAATACTGAGCAGGCGTTTTGGAAACTGGATTGAATTCGATGGTGTGTTTAAGGAGTTCCAAAAAACCACCCGTACGCATAACATTCACGGCGAAAGTAAACTGCTGAAGGACATGCGATTTAAATACAGTTTTGTGGTGTTATGAACTAGATGCAGGCACTTTGCGAGTGCAATTGTCGAACATTTATGACTTGTCGTCATATACTACTGACATATGTAAAAAGACCAACTCTTACAGCTCATCACATACTTAGACCATGCAGCCGATGGAAGTTAAATAACACGCATAACTTCCATTATAATACAACAACATCATTACCCAGAACGGGAGTGAGAGTATA] [+] EMBL CD130651 [ATACTCTGAATTTGTGTGAATCGTTGTTTTCTGCGAGAATTAAGACGATATGACGATTACTGAAGTATTATCGCATGAGATAGCTGCTTTTTTTAGTAATTAACGAGTAATGTTTGTAGTGATTTATGTTCCAGAGACATTTCGGTCGACTTAAGTGAGGCGTTTCAACGCATAATACTGAGCAGGCGTTTTGGAAACTGGATTGAATTCGATGGTGTGTTTAAGGAGTTCCAAAAAACCACCCGTACGCATAACATTCACGGCGAAAGTAAACTGCTGAAGGACATGCGATTTAAATACAGTTTTGTGGTGTTATGAACTAGATGCAGGCACTTTGCGAGTGCAATTGTCGAACATTTATGACTTGTCGTCATATACTACTGACATATGTAAAAAGACCAACTCTTACAGCTCATCACATACTTAGACCATGCAGCCGATGGAAGTTAAATAACACGCATAACTTCCATTATAATACAACAACATCATTACCCAGAACGGGAGTGAGAGTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_770#0 ----TCAAACTTTATGATGAGTCGGCCTTTGTCGAACGGGTTTTTGTATCTTGGCATTCC 56 consensus_770#1 ATACTCTGAATTTGTG-TGAATCGTTGTTTTCTGCGAGAATTAAGACGATATGACGATTA 59 ** * *** ** *** *** *** * * ** ** * * consensus_770#0 CTCTCCTTCAATCGCACGGAAATCCTTATTAGTATACACCTCACCGGGTCTGGAATTTAT 116 consensus_770#1 CTGAAGTATTATCGCATGAGATAGCTGCTTTTTTTAGTAATTAACGAG--TAATGTTTGT 117 ** * ****** * * ** ** * ** * * ** * * *** * consensus_770#0 CACTAGTGTCCGATCATCTAATGTTCGTATCGTCCGCTGAAAGCCACACAAGGCTTCAGA 176 consensus_770#1 ----AGTGATTTATGTTCCAGAGA-CATTTCGGTCGACTTAAGTGAGGC---GTTTCAAC 169 **** ** ** * * * * *** ** *** * * * **** consensus_770#0 GAGTGATAATTCTATGGTGTGTATCAAGTCGTTTCGACGTCTGATGAAACGGCTATGCCA 236 consensus_770#1 GCATAATACTGAGCAGGCGTTTTGGAAACTGGATTGA-ATTCGATGGTGTGTTTAAGGAG 228 * * *** * ** ** * ** * * ** * **** * ** * consensus_770#0 CCACGACCTTGACACTGATCACAAATAACTTTTCGCGTAACACCAAGTTTTCTAACAC-- 294 consensus_770#1 TTCCAAAAA-ACCACCCGT-ACGCATAACATTCACGGCGAAAGTAAACTGCTGAAGGACA 286 * * *** * ** ***** ** * * * ** * ** consensus_770#0 TGCCATTGTAGAGCTCTTCTAAAGTCACTGATAACTGGTGCACACAGTCTTTTCCGCGAC 354 consensus_770#1 TGCGATTTAAATACAGTTTTGTGGT-GTTATGAACTAG---ATGCAGGCACTTT-GCGAG 341 *** *** * * ** * ** * **** * * *** * ** **** consensus_770#0 GGNGTCCGCGAGAACGACCACCCCCGAAGACATTTGGAAATATCCATTGGGTCAGCCATT 414 consensus_770#1 TGCAATTGTC-GAACATTTATGACTT--GTCGTCATATACTACTGACATATGTAAAAAGA 398 * * **** * * * * * * ** * * * consensus_770#0 CCACCTGACTCAACTCCACCCTCCTTAATTCCTTGCTCGCCTCTTGTATCATATATTTCT 474 consensus_770#1 CCAACTCTTACAGCTCATCACATACTTAGACCATGCAGCCGATGGAAGTTAAATAACACG 458 *** ** ** *** * * * * ** *** * * * *** * consensus_770#0 CTT--TTTTCAGGGTCACACAGAACCATAAATGCTTGAGAAAATTCTTTGAACTTATCTG 532 consensus_770#1 CATAACTTCCATTATAATACAACAACATCATTACCCAGAACGGGAGTGAGAGTATA---- 514 * * ** ** * * *** * *** * * * * * ** ** consensus_770#0 CGCTATCCGGATTTTTGTCTGGGTGATACTTAAAGGCCTTTTGTGCGGTAGCCTTTTTTA 592 consensus_770#1 ------------------------------------------------------------ consensus_770#0 ATTTCCGCCTCAGTTGCGGGCCCAGGGAACACCGAGCAGATCATAGGACTTCCCTTCCCT 652 consensus_770#1 ------------------------------------------------------------ consensus_770#0 TACCATCTCTGTAAAAACCCGCTCTACTG 681 consensus_770#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||