cluster # 7707

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Schistosoma mansoni
cluster # 7707 cluster # 7707 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7707#0 length = 532 sequences # 4

consensus_7707#1 length = 527 sequences # 1

consensusID : consensus_7707#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 532
fasta sequence

                              [CGGTAATTATTAGATTATTCGCACGAAAAATCATTATCAATAACGCAGTCACATATACTAGAAAGACGAGGCACAATTGTTCACTTGATCATTATTAATCAAAAAAGCAACGACTATCTAATTTGATCACATGAGAGTAACACCTGTTGAATCGTCCAAAGAATTCCTTAATTCATCATCCAGTAATTTCACACCTTCCTTCAGTAATTCATGATTACGAAGAATCGACTCCAAAGGAGTTGTAAGACAAACTTCATAAGTTTCTTGAGGATGTGGCAGCGTATTACGATGCGGAGTAACCACGGGGAGTTCCGAAAGCTGAGCTGGTAGTGGATCCGTAGTGAAATATGGATCTTTCAATGCTTCGGATACCGTAATTCTTTGATGGGGTGGGTACACCAAGAATTTACTAACAAGAGCAACGGCTTCAACTGATGCGTCTGGAAGGACTTCTTCAAACGGGATGGTTTCGCACAGGTTAAAACTTATCTTGTTATAATCAGGTAGTTCTTTAACCTCAGGCCATATGTCT]

[+] EMBL CD076695             [CGGTAATTATTAGATTATTCGCACGAAAAATCATTATCAATAACGCAGTCACATATACTAGAAAGACGAGGCACAATTGTTCACTTGATCATTATTAATCAAAAAAGCAACGACTATCTAATTTGATCACATGAGAGTAACACCTGTTGAATCGTCCAAAGAATTCCTTAATTCATCATCCAGTAATTTCACACCTTCCTTCAGTAATTCATGATTACGAAGAATCGACTCCAAAGGAGTTGTAAGACAAACTTCATAAGTTTCTTGAGGATGTGGCAGCGTATTACGATGCGGAGTAACCACGGGGAGTTCCGAAAGCTGAGCTGGTAGTGGATCCGTAGTGAAATATGGATCTTTCAATGCTTCGGATACCGTAATTCTTTGATGGGGTGGGTACACCAAGAATTTACTAACAAGAGCAACGGCTTCAACTGATGCGTCTGGAAGGACTTCTTCAAACGGGATGGTTTCGCACAGGTTAAAACTTATCTTGTTATAATCAGGTAGTTCTTTAACCTCAGGCCATATGTCT]
[+] EMBL CD076653             [CGGTAATTATTAGATTATTCGCACGAAAAATCATTATCAATAACGCAGTCACATATACTAGAAAGACGAGGCACAATTGTTCACTTGATCATTATTAATCAAAAAAGCAACGACTATCTAATTTGATCACATGAGAGTAACACCTGTTGAATCGTCCAAAGAATTCCTTAATTCATCATCCAGTAATTTCACACCTTCCTTCAGTAATTCATGATTACGAAGAATCGACTCCAAAGGAGTTGTAAGACAAACTTCATAAGTTTCTTGAGGATGTGGCAGCGTATTACGATGCGGAGTAACCACGGGGAGTTCCGAAAGCTGAGCTGGTAGTGGATCCGTAGTGAAATATGGATCTTTCAATGCTTCGGATACCGTAATTCTTTGATGGGGTGGGTACACCAAGAATTTACTAACAAGAGCAACGGCTTCAACTGATGCGTCTGGAAGGACTTCTTCAAACGGGATGGTTTCGCACAGGTTAAAACTTATCTTGGTATAATCAGGTAGTTCT                     ]
[+] EMBL CD064276             [                                                                                                                                                                                                      CTTCAGTAATTCATGATTACGAAGAATCGACTCCAAAGGAGTTGTAAGACAAACTTCATAAGTTTCTTGAGGATGTGGCAGCGTATTACGATGCGGAGTAACCACGGGGAGTTCCGAAAGCTGAGCTGGTAGTGGATCCGTAGTGAAATATGGATCTTTCAATGCTTCGGATACCGTAATTCTTTGATGGGGTGGGTACACCAAGAATTTACTAACAAGAGCAA                                                                                                              ]
[-] EMBL CD166661             [                                                                                                                                                                                                                                                                                                        TAACCACGGGGAGTTCCGAAAGCTGAGCTGGTAGTGGATCCGTAGTGAAATATGGATCTTTCAATGCTTCGGATACCGTAATTCTTTGATGGGGTGGGTACACCAAGAATTTAC GACAAGAGCAACtgg                                                                                                          ]




>consensus_7707#0
CGGTAATTATTAGATTATTCGCACGAAAAATCATTATCAATAACGCAGTCACATATACTA
GAAAGACGAGGCACAATTGTTCACTTGATCATTATTAATCAAAAAAGCAACGACTATCTA
ATTTGATCACATGAGAGTAACACCTGTTGAATCGTCCAAAGAATTCCTTAATTCATCATC
CAGTAATTTCACACCTTCCTTCAGTAATTCATGATTACGAAGAATCGACTCCAAAGGAGT
TGTAAGACAAACTTCATAAGTTTCTTGAGGATGTGGCAGCGTATTACGATGCGGAGTAAC
CACGGGGAGTTCCGAAAGCTGAGCTGGTAGTGGATCCGTAGTGAAATATGGATCTTTCAA
TGCTTCGGATACCGTAATTCTTTGATGGGGTGGGTACACCAAGAATTTACTAACAAGAGC
AACGGCTTCAACTGATGCGTCTGGAAGGACTTCTTCAAACGGGATGGTTTCGCACAGGTT
AAAACTTATCTTGTTATAATCAGGTAGTTCTTTAACCTCAGGCCATATGTCT

consensusID : consensus_7707#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [GGTGGAGTACAAAAATGACGGGTGTGAGGTGAATATTTACCTCACGCAATAGAAGATGGTCGCGTAATCTCACTAATGGATTGATGTTAGACTCATAATTACATTTGTTTGGGAGCTGGAGTGCGAATGTTAGAATCAGTGTAAATGTTGAATAAAGAAACAGTTGTCTGAGTCACTTTTTAGCGCTTAAAAAAATCATCCTCGTTGTAGTGATCTTGACAAAATATTAATTTACATGTTTTTTTGTTACTTATGTGTTTCATTCTGTTGTCTGCGTGGGACTCAGGAACCTAAGATGAAGTTGCAACTTGCTTTTTAAAGCGAATTCTAAAATAATAACTTTTTGTTTTGCATATTATTTTCAATGATATCAATGTTTTGTGGATTAGTCGATGAAATCTTCTTATAAGCTGAAAGTCCTGCTTGTTTGTTCGGAAGAATTTTATTCTTGCATATTTCAGGCATTGAAAGATCCATATTTCACTACGGATCCACTACCAGCTCAGCTTTCGGAACTCCCCGTGGTT]

[+] EMBL CD084345             [GGTGGAGTACAAAAATGACGGGTGTGAGGTGAATATTTACCTCACGCAATAGAAGATGGTCGCGTAATCTCACTAATGGATTGATGTTAGACTCATAATTACATTTGTTTGGGAGCTGGAGTGCGAATGTTAGAATCAGTGTAAATGTTGAATAAAGAAACAGTTGTCTGAGTCACTTTTTAGCGCTTAAAAAAATCATCCTCGTTGTAGTGATCTTGACAAAATATTAATTTACATGTTTTTTTGTTACTTATGTGTTTCATTCTGTTGTCTGCGTGGGACTCAGGAACCTAAGATGAAGTTGCAACTTGCTTTTTAAAGCGAATTCTAAAATAATAACTTTTTGTTTTGCATATTATTTTCAATGATATCAATGTTTTGTGGATTAGTCGATGAAATCTTCTTATAAGCTGAAAGTCCTGCTTGTTTGTTCGGAAGAATTTTATTCTTGCATATTTCAGGCATTGAAAGATCCATATTTCACTACGGATCCACTACCAGCTCAGCTTTCGGAACTCCCCGTGGTT]




>consensus_7707#1
GGTGGAGTACAAAAATGACGGGTGTGAGGTGAATATTTACCTCACGCAATAGAAGATGGT
CGCGTAATCTCACTAATGGATTGATGTTAGACTCATAATTACATTTGTTTGGGAGCTGGA
GTGCGAATGTTAGAATCAGTGTAAATGTTGAATAAAGAAACAGTTGTCTGAGTCACTTTT
TAGCGCTTAAAAAAATCATCCTCGTTGTAGTGATCTTGACAAAATATTAATTTACATGTT
TTTTTGTTACTTATGTGTTTCATTCTGTTGTCTGCGTGGGACTCAGGAACCTAAGATGAA
GTTGCAACTTGCTTTTTAAAGCGAATTCTAAAATAATAACTTTTTGTTTTGCATATTATT
TTCAATGATATCAATGTTTTGTGGATTAGTCGATGAAATCTTCTTATAAGCTGAAAGTCC
TGCTTGTTTGTTCGGAAGAATTTTATTCTTGCATATTTCAGGCATTGAAAGATCCATATT
TCACTACGGATCCACTACCAGCTCAGCTTTCGGAACTCCCCGTGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7707#0      CGGTAATTATTAGATTATTCGCACGAAAAATCATTATCAATAACGCAGTCACATATACTA 60
consensus_7707#1      --------GGTGGAGTACAAAAATGACGGGTGTGAGGTGAATATTTA-CCTCACGCAATA 51
                                * ** **     * **    *        *  *   *  * **   * **

consensus_7707#0      GAAAGACGAGGCACAATTGTTC-ACTTGATCATTATTAA--TCAAAAAAGCAACGACT-- 115
consensus_7707#1      GAAGATGGTCGCGTAATCTCACTAATGGATTGATGTTAGACTCATAATTACATTTGTTTG 111
                      ***    *  **  ***    * * * ***   * ***   *** **   **     *  

consensus_7707#0      --ATCTAATTTGATCACATGAGAGTAA---CACCTGTTGAATCGTCCAAAGAATTCCTTA 170
consensus_7707#1      GGAGCTGGAGTGCGAATGTTAGAATCAGTGTAAATGTTGAAT-AAAGAAACAGTTGTCTG 170
                        * **    **   *  * *** * *    *  ********     *** * **   * 

consensus_7707#0      ATTCATCATCCAGTAATTTCACACCTTCCTTCAGTAAT--TCATGATTACGAAGAATCGA 228
consensus_7707#1      AGTCACTTTTTAGCGCTTAAAAAAATCATCCTCGTTGTAGTGATCTTGACAAAATATTAA 230
                      * ***   *  **   **  * *  *       **  *  * **  * ** **  **  *

consensus_7707#0      CTCCAAAGGAGTTGTAAGACAAACTTCATAAGTTTCTTGAGGATGTGGCAGCGTATTACG 288
consensus_7707#1      TTTACATGTTTTTTTGTTAC-----TTATGTGTTTCATTCTGTTGT--CTGCGTGGGAC- 282
                       *   * *   ** *   **     * **  ***** *   * ***  * ****   ** 

consensus_7707#0      ATGCGGAGTAACCACGGGGAGTTCCGAAAGCTGAGCTGGTAGTGGATCCGTAGTGAAATA 348
consensus_7707#1      ---TCAGGAACCTAAGATGAAGTTGCAACTTGCTTTTTAAAGCGAATTCTAAAATAATAA 339
                             * * * * *  **  *   **        *   ** * ** *  *   **  *

consensus_7707#0      TGGATCTTTCAATGCTTCGGATACCGTAATTCTTTGATGGGGTGGGTACACCAAGAATTT 408
consensus_7707#1      CTTTTTGTTTTGCATATTATTTTCAATGATATCAATGTTTTGTGGATTAGTCGATGAAAT 399
                          *  **       *    * *  * **       *   **** *    * *  *  *

consensus_7707#0      ACTAACAAGAGCAACGGCTTCAACTGATGCGTCTGGAAGGACTTC-TTCAAACGGGATGG 467
consensus_7707#1      CTTCTTATAAGCTGAAAGTCCTGCTTGTTTGTTCGGAAGAATTTTATTCTTGCATATT-- 457
                        *   *  ***      * *  **  *  **  ***** * **  ***   *    *  

consensus_7707#0      TTTCGCACAGGTTAAAACTTATCTTGTTATA-ATCAGGTAGTTCTTTAACCTCAGG---- 522
consensus_7707#1      TCAGGCATTGAAAGATCCATATTTCACTACGGATCCACTACCAGCTCAGCTTTCGGAACT 517
                      *   ***  *    *  * *** *   **   ***   **     * * * *  **    

consensus_7707#0      CCATATGTCT 532
consensus_7707#1      CCCCGTGGTT 527
                      **   **  *