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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 771 cluster # 771       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_771#0 length = 439 sequences # 1  
consensus_771#1 length = 202 sequences # 1  

consensusID : consensus_771#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence
                              [TGGTCGATGCATATGACTTGAGCTTTTCTACTTATGAGCAATTGTGAGGTGATAGAGTGTGGATTGATGGTATTGGATCAGGAATCGAGAGGCATAGAGAGATTGTGAACTTGATTTTGGATTGGCATATGGAGATTGCCCGTTGATTGTGCCAGACGTCGAGATGCACCATGCAGCTGACTAGAGCTTTCTACTTATGAGGAATTGTGAGGTGATCGTGGGGGGATTGACGTTATTGGATCAGTAGGCTAATGGCACAGAGACATTGCTTATTTCGAGGATCATCACACGATTGGCATCGCGTTCATAGGATGCGTGCTAGAGGCGAGATCCTATCGCTCATGATTTAAGATTATACAGTAGGGTGATGAGGATTCCTGCCTGATGGCTTTATTCTTTCGTTCTACACGATAACAGTGATTATCTGTGAGAATGCCAG]

[+] EMBL CD066247             [TGGTCGATGCATATGACTTGAGCTTTTCTACTTATGAGCAATTGTGAGGTGATAGAGTGTGGATTGATGGTATTGGATCAGGAATCGAGAGGCATAGAGAGATTGTGAACTTGATTTTGGATTGGCATATGGAGATTGCCCGTTGATTGTGCCAGACGTCGAGATGCACCATGCAGCTGACTAGAGCTTTCTACTTATGAGGAATTGTGAGGTGATCGTGGGGGGATTGACGTTATTGGATCAGTAGGCTAATGGCACAGAGACATTGCTTATTTCGAGGATCATCACACGATTGGCATCGCGTTCATAGGATGCGTGCTAGAGGCGAGATCCTATCGCTCATGATTTAAGATTATACAGTAGGGTGATGAGGATTCCTGCCTGATGGCTTTATTCTTTCGTTCTACACGATAACAGTGATTATCTGTGAGAATGCCAG]


>consensus_771#0 TGGTCGATGCATATGACTTGAGCTTTTCTACTTATGAGCAATTGTGAGGTGATAGAGTGT GGATTGATGGTATTGGATCAGGAATCGAGAGGCATAGAGAGATTGTGAACTTGATTTTGG ATTGGCATATGGAGATTGCCCGTTGATTGTGCCAGACGTCGAGATGCACCATGCAGCTGA CTAGAGCTTTCTACTTATGAGGAATTGTGAGGTGATCGTGGGGGGATTGACGTTATTGGA TCAGTAGGCTAATGGCACAGAGACATTGCTTATTTCGAGGATCATCACACGATTGGCATC GCGTTCATAGGATGCGTGCTAGAGGCGAGATCCTATCGCTCATGATTTAAGATTATACAG TAGGGTGATGAGGATTCCTGCCTGATGGCTTTATTCTTTCGTTCTACACGATAACAGTGA TTATCTGTGAGAATGCCAG



consensusID : consensus_771#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 202
fasta sequence
                              [CATATTCCCGCGGGCTCCTCCACACACTCAGGGAATTGCTATAATGCTGTTCATAGAAGCACGAAATGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGAT]

[+] EMBL CD145915             [CATATTCCCGCGGGCTCCTCCACACACTCAGGGAATTGCTATAATGCTGTTCATAGAAGCACGAAATGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGAT]


>consensus_771#1 CATATTCCCGCGGGCTCCTCCACACACTCAGGGAATTGCTATAATGCTGTTCATAGAAGC ACGAAATGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGT CGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGT GTGTGGATTGATGGTATTGGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_771#0      TGGTCGATGCATATGACTTGAGCTTTTCTACTTATGAGCAATTGTGAGGTGATAGAGTGT 60
consensus_771#1      ------------------------CATATTCCCGCGGGCTCCTCCACACACTCAGGGAAT 36
                                               * * *    * **   *          ** *  *

consensus_771#0      GGATTGATGGTATTGGATCAGGAATCGAGAGGCATAGAGAGATTGTGAACTTGATTTTGG 120
consensus_771#1      TGCT--ATAATGCTGT-TCAT------AGAAGCACGAAA------TGAACTTGATTTTGG 81
                      * *  **  *  **  ***       *** ***   *       ***************

consensus_771#0      ATTGGCATATGGAGATTGCCCGTTGATTGTGCCAGACGTCGAGATGCACCATGCAGCTGA 180
consensus_771#1      ATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGA 141
                     ********** ******* * **************  **** ****  * *** ** ***

consensus_771#0      CTAGAGCTTTCTACTTATGAGGAATTGTGAGGTGATCGTGGGGGGATTGACGTTATTGGA 240
consensus_771#1      CTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGA 201
                     ** *** ************** ************** *** * ******* * *******

consensus_771#0      TCAGTAGGCTAATGGCACAGAGACATTGCTTATTTCGAGGATCATCACACGATTGGCATC 300
consensus_771#1      T----------------------------------------------------------- 202
                     *                                                           

consensus_771#0      GCGTTCATAGGATGCGTGCTAGAGGCGAGATCCTATCGCTCATGATTTAAGATTATACAG 360
consensus_771#1      ------------------------------------------------------------
                                                                                 

consensus_771#0      TAGGGTGATGAGGATTCCTGCCTGATGGCTTTATTCTTTCGTTCTACACGATAACAGTGA 420
consensus_771#1      ------------------------------------------------------------
                                                                                 

consensus_771#0      TTATCTGTGAGAATGCCAG 439
consensus_771#1      -------------------
                                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)