These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [TGGTCGATGCATATGACTTGAGCTTTTCTACTTATGAGCAATTGTGAGGTGATAGAGTGTGGATTGATGGTATTGGATCAGGAATCGAGAGGCATAGAGAGATTGTGAACTTGATTTTGGATTGGCATATGGAGATTGCCCGTTGATTGTGCCAGACGTCGAGATGCACCATGCAGCTGACTAGAGCTTTCTACTTATGAGGAATTGTGAGGTGATCGTGGGGGGATTGACGTTATTGGATCAGTAGGCTAATGGCACAGAGACATTGCTTATTTCGAGGATCATCACACGATTGGCATCGCGTTCATAGGATGCGTGCTAGAGGCGAGATCCTATCGCTCATGATTTAAGATTATACAGTAGGGTGATGAGGATTCCTGCCTGATGGCTTTATTCTTTCGTTCTACACGATAACAGTGATTATCTGTGAGAATGCCAG] [+] EMBL CD066247 [TGGTCGATGCATATGACTTGAGCTTTTCTACTTATGAGCAATTGTGAGGTGATAGAGTGTGGATTGATGGTATTGGATCAGGAATCGAGAGGCATAGAGAGATTGTGAACTTGATTTTGGATTGGCATATGGAGATTGCCCGTTGATTGTGCCAGACGTCGAGATGCACCATGCAGCTGACTAGAGCTTTCTACTTATGAGGAATTGTGAGGTGATCGTGGGGGGATTGACGTTATTGGATCAGTAGGCTAATGGCACAGAGACATTGCTTATTTCGAGGATCATCACACGATTGGCATCGCGTTCATAGGATGCGTGCTAGAGGCGAGATCCTATCGCTCATGATTTAAGATTATACAGTAGGGTGATGAGGATTCCTGCCTGATGGCTTTATTCTTTCGTTCTACACGATAACAGTGATTATCTGTGAGAATGCCAG] consensusID : consensus_771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 202 fasta sequence [CATATTCCCGCGGGCTCCTCCACACACTCAGGGAATTGCTATAATGCTGTTCATAGAAGCACGAAATGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGAT] [+] EMBL CD145915 [CATATTCCCGCGGGCTCCTCCACACACTCAGGGAATTGCTATAATGCTGTTCATAGAAGCACGAAATGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_771#0 TGGTCGATGCATATGACTTGAGCTTTTCTACTTATGAGCAATTGTGAGGTGATAGAGTGT 60 consensus_771#1 ------------------------CATATTCCCGCGGGCTCCTCCACACACTCAGGGAAT 36 * * * * ** * ** * * consensus_771#0 GGATTGATGGTATTGGATCAGGAATCGAGAGGCATAGAGAGATTGTGAACTTGATTTTGG 120 consensus_771#1 TGCT--ATAATGCTGT-TCAT------AGAAGCACGAAA------TGAACTTGATTTTGG 81 * * ** * ** *** *** *** * *************** consensus_771#0 ATTGGCATATGGAGATTGCCCGTTGATTGTGCCAGACGTCGAGATGCACCATGCAGCTGA 180 consensus_771#1 ATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGA 141 ********** ******* * ************** **** **** * *** ** *** consensus_771#0 CTAGAGCTTTCTACTTATGAGGAATTGTGAGGTGATCGTGGGGGGATTGACGTTATTGGA 240 consensus_771#1 CTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGA 201 ** *** ************** ************** *** * ******* * ******* consensus_771#0 TCAGTAGGCTAATGGCACAGAGACATTGCTTATTTCGAGGATCATCACACGATTGGCATC 300 consensus_771#1 T----------------------------------------------------------- 202 * consensus_771#0 GCGTTCATAGGATGCGTGCTAGAGGCGAGATCCTATCGCTCATGATTTAAGATTATACAG 360 consensus_771#1 ------------------------------------------------------------ consensus_771#0 TAGGGTGATGAGGATTCCTGCCTGATGGCTTTATTCTTTCGTTCTACACGATAACAGTGA 420 consensus_771#1 ------------------------------------------------------------ consensus_771#0 TTATCTGTGAGAATGCCAG 439 consensus_771#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||