These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7713#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 884 fasta sequence [TCTATAGCATAAGCATGGGAGCTTATATGTCTAAACCGAAAACAGAGAAAATCTCTGATGATGGGGCGAATCAGTGGTTATCTTATAGCTCCTGCTCTATGCAGGGTTGGAGAATGCATCAGGAGGATGCTCACAACTGCATACCGAACTTCGATGCATCACTAGGTATTTCCTTCTTTGCAGTCTATGACGGCCATGGTGGATCAGAAGTGGCACGATATTGTGCAGAATACATGCCTGATTTTTTAATGAAACTTCCTTATAATAAATTAAATATGAAGGAAACCTTAAAGCAGTTATTCCTTGATTTCGATGCTACATTAGTAACTCCTGAAACGAGAGCTGTTTTAAGTAAAATGTCAGAGACAGACAAAGCCGATAGTTCATCAGAGAAGGAGTCACCTGACCCAGCCCATTATACCGCTGAAATTGATGATAATGATGGAGAGGAAGATGAAAATTATTCTGAACTTTTGGCCCTGCGTGCTGAAGCAAACCAACCTTTGGAGGATGTTTTAGAACAATATGGAGGAGAGGATGCTTTACCTTCGAGTATTAAGACTATCCTGGATACCCGACGTCAACAAAAAGTTGGTGAATGTAGTCGTAATATAAGTAAATCGTCAAAAAGTTCATCAGAAGATAATGATTCAGAGTTGGACAAAACAACAGATTCTTCGTGCACTAAAGTATCCAATGCTACTGATGCCAATGCTGTTGAGACTGTTGAACGAGGAGACTCATCTTCTGAATCTAGTAATAGAAAAGACAGTACTACTTATTCTCACAATGATGATAATACAAAAAAAGAATTATCAAATGAACCATCAGAAATACCTACAGATAAAAATGTAAACAATTNCNACAGTGACTTCGTGGGGTAC] [+] EMBL BF936418 [TCTATAGCATAAGCATGGGAGCTTATATGTCTAAACCGAAAACAGAGAAAATCTCTGATGATGGGGCGAATCAGTGGTTATCTTATAGCTCCTGCTCTATGCAGGGTTGGAGAATGCATCAGGAGGATGCTCACAACTGCATACCGAACTTCGATGCATCACTAGGTATTTCCTTCTTTGCAGTCTATGACGGCCATGGTGGATCAGAAGTGGCACGATATTGTGCAGAATACATGCCTGATTTTTTAATGAAACTTCCTTATAATAAATTAAATATGAAGGAAACCTTAAAGCAGTTATTCCTTGATTTCGATGCTACATTAGTAACTCCTGAAACGAGAGCTGTTTTAAGTAAAATGTCAGAGACAGACAAAGCCGATAGTTCATCAGAGAAGGAGTCACCTGACCCAGCCCATTATACCGCTGAAATTGATGATAATGATGGAGAGGAAGATGAAAATTATTCTGAACTTTTGGCCCTGCGTGCTGAAGCAAACCAACCTTTGGAGGATGTTTTAGAACAATATGGAGGAGAGGATGCTTTACCTTCGAGTATTAAGACTATCCTGGATAC ] [-] EMBL CD147815 [ agGCTTATATGTCTAAACCGAAAACAGAGAAAATCTCTGATGATGGGGCGAATCAGTGGTTATCTTATAGCTCCTGCTCTATGCAGGGTTGGAGAATGCATCAGGAGGATGCTCACAACTGCATACCGAACTTCGATGCATCACTAGGTATTTCCTTCTTTGCAGTCTATGACGGCCATGGTG ] [+] EMBL CD156081 [ TTGGAGAATGCATCAGGAGGATGCTCACAACTGCATACCGAACTTCGATGCATCACTAGGTATTTCCTTCTTTGCAGTCTATGACGGCCATGGTGGATCAGAAGTGGCACGATATTGTGCAGAATACATGCCTGATTTTTTAATGAAACTTCCTTATAATAAATTAAATATGAAGGAAACCTTAAAGCAGTTATTCCTTGATTTCGACGCTACATTAGTAACTCCTGAAACGAGAGCTGTTTTAAGTAAAATGTCAGAGACAGACAAAGCCGATAGTTCACCAGAGAAGGAGTCACCTGACCCAGCCCATTATACCGCTGAAATTGA ] [-] EMBL CD065962 [ CCATTATACCGCTGAAATTGATGATAATGATGGAGAGGAAGATGAAAATTATTCTGAACTTTTGGCCCTGCGTGCTGAAGCAAACCAACCTTTGGAGGATGTTTTAGAACAATATGGAGGAGAGGATGCCTTACCTTCGAGTATTAAGACTATCCTGGATACCCGACGTCAACAAAAAGTTGGTGAATGTAGTCGTAATATAAGTAAATCGTCAAAAAGTTCATCAGAAGATAATGATTCAGAGTTGGACAAAACAACAGATTCTTCGTGCACTAAAGTATCCAATGCTACTGATGCCAATGCTGTTGAGACTGTTGAACGAGGAGACTCATCTTCTGAATCTAGTAATAGAAAAGACAGTACTACTTATTCTCACAATGATGATAATACAAAAAAAGAATTATCAAATGAACCATCAGAAATACCTACAGATAAAAATGTAAACAATTNCNACAGTGACTTCGTGGGGTAC] consensusID : consensus_7713#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 230 fasta sequence [AGAGACAGACAAAGCCGATAGTTCATCAGAGAATGCATCAGGAGGATGCTCACAACTGCATACCGTACTTCGATGCATCACTAGGTATTTCCTTCGTTGCAGTCTATGACGGCCATGGTGGATCAGAAGTGGCACGATATTGTGCAGAATACATGCCTGATTTTTTAATGAAACTTCCTTATAATAAATTAAATATGAAGGAAACCTTAAAGCAGTTATTCCTTGATTTC] [-] EMBL CD165255 [AGAGACAGACAAAGCCGATAGTTCATCAGAGAATGCATCAGGAGGATGCTCACAACTGCATACCGTACTTCGATGCATCACTAGGTATTTCCTTCGTTGCAGTCTATGACGGCCATGGTGGATCAGAAGTGGCACGATATTGTGCAGAATACATGCCTGATTTTTTAATGAAACTTCCTTATAATAAATTAAATATGAAGGAAACCTTAAAGCAGTTATTCCTTGATTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7713#0 TCTATAGCATAAGCATGGGAGCTTATATGTCTAAACCGAAAACAGAGAAAATCTCTGATG 60 consensus_7713#1 ------------------------------------------------------------ consensus_7713#0 ATGGGGCGAATCAGTGGTTATCTTATAGCTCCTGCTCTATGCAGGGTTGGAGAATGCATC 120 consensus_7713#1 ------------AGAGACAGAC--AAAGCCGATAGTTCAT-------CAGAGAATGCATC 39 ** * * * *** * * ** *********** consensus_7713#0 AGGAGGATGCTCACAACTGCATACCGAACTTCGATGCATCACTAGGTATTTCCTTCTTTG 180 consensus_7713#1 AGGAGGATGCTCACAACTGCATACCGTACTTCGATGCATCACTAGGTATTTCCTTCGTTG 99 ************************** ***************************** *** consensus_7713#0 CAGTCTATGACGGCCATGGTGGATCAGAAGTGGCACGATATTGTGCAGAATACATGCCTG 240 consensus_7713#1 CAGTCTATGACGGCCATGGTGGATCAGAAGTGGCACGATATTGTGCAGAATACATGCCTG 159 ************************************************************ consensus_7713#0 ATTTTTTAATGAAACTTCCTTATAATAAATTAAATATGAAGGAAACCTTAAAGCAGTTAT 300 consensus_7713#1 ATTTTTTAATGAAACTTCCTTATAATAAATTAAATATGAAGGAAACCTTAAAGCAGTTAT 219 ************************************************************ consensus_7713#0 TCCTTGATTTCGATGCTACATTAGTAACTCCTGAAACGAGAGCTGTTTTAAGTAAAATGT 360 consensus_7713#1 TCCTTGATTTC------------------------------------------------- 230 *********** consensus_7713#0 CAGAGACAGACAAAGCCGATAGTTCATCAGAGAAGGAGTCACCTGACCCAGCCCATTATA 420 consensus_7713#1 ------------------------------------------------------------ consensus_7713#0 CCGCTGAAATTGATGATAATGATGGAGAGGAAGATGAAAATTATTCTGAACTTTTGGCCC 480 consensus_7713#1 ------------------------------------------------------------ consensus_7713#0 TGCGTGCTGAAGCAAACCAACCTTTGGAGGATGTTTTAGAACAATATGGAGGAGAGGATG 540 consensus_7713#1 ------------------------------------------------------------ consensus_7713#0 CTTTACCTTCGAGTATTAAGACTATCCTGGATACCCGACGTCAACAAAAAGTTGGTGAAT 600 consensus_7713#1 ------------------------------------------------------------ consensus_7713#0 GTAGTCGTAATATAAGTAAATCGTCAAAAAGTTCATCAGAAGATAATGATTCAGAGTTGG 660 consensus_7713#1 ------------------------------------------------------------ consensus_7713#0 ACAAAACAACAGATTCTTCGTGCACTAAAGTATCCAATGCTACTGATGCCAATGCTGTTG 720 consensus_7713#1 ------------------------------------------------------------ consensus_7713#0 AGACTGTTGAACGAGGAGACTCATCTTCTGAATCTAGTAATAGAAAAGACAGTACTACTT 780 consensus_7713#1 ------------------------------------------------------------ consensus_7713#0 ATTCTCACAATGATGATAATACAAAAAAAGAATTATCAAATGAACCATCAGAAATACCTA 840 consensus_7713#1 ------------------------------------------------------------ consensus_7713#0 CAGATAAAAATGTAAACAATTNCNACAGTGACTTCGTGGGGTAC 884 consensus_7713#1 -------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||