These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 739 fasta sequence [AGCTTCTTCTTATTCGAAATCAATATAACCGAATCCCCGATGACGACCAGAACATTTAGGATCTGGATACAAGCTGCAGCTGTTTACTTTCCCAAATGCCTCGAATACAGTTTGAATATCAGACTCGGTTAACTCTGGATGAACTGAAGCAATGTATACACGAGGCTTAGTACTGACTTCTGCGCGTAGTTCGGCTTCTAAAGCAGCAGTTTGAGGAGCGTTGCTTGGTCGCCCGACCTTTAGGTTCCTGCCAGCTAGAGTGTATCCATTCATTTGATCTAATGCCAAAGAAGCAGCTTCTGGGACCTCGAACTCAACAAAAGCAAATCCCTTGTGTTTTTGTAGAACTGTATCCCAACTAAGAGCGACAGACTTGATCGGTCCGAAGGGTGAAAACGTTTTTCTGATTTCTTCCTCTCCTATTTCAAAACTGATTGACCCAACATATATTCGACTCAAAAGAATAAGTGCCTGGTTCCTTTTAATTGTATTCAAGTCCTGTTGGTGCAGCTGTGCTGCTTGTTTGCTGAGTGCATTCTGAATACTTTGCTCTAAAGCATACTTCTTTGCCCTTTCAATGGCGAAACGCTGATCATCCGTCGGAGTCAACAGTGTGAAAGGTTCTTGTTAAATATTAGTTCCAAAGTGAATAGAATCTCCCATTGGCATAAGACTAATTATACCACCAGACTTCCGTAACGCGGCCGCAACACTCAGATCTACGTTAATCATACCGGCG] [+] EMBL CD059706 [AGCTTCTTCTTATTCGAAATCAATATAACCGAATCCCCGATGACGACCAGAACATTTAGGATCTGGATACAAGCTGCAGCTGTTTACTTTCCCAAATGCCTCGAATACAGTTTGAATATCAGACTCGGTTAACTCTGGATGAACTGAAGCAATGTATACACGAGGCTTAGTACTGACTTCTGCGCGTAGTTCGGCTTCTAAAGCAGCAGTTTGAGGAGCGTTGCTTGGTCGCCCGACCTTTAGGTTCCTGCCAGCTAGAGTGTATCCATTCATTTGATCTAATGCCAAAGAAGCAGCTTCTGGGACCTCGAACTCAACAAAAGCAAATCCCTTGTGTTTTTGTAGAACTGTATCCCAACTAAGAGCGACAGACTTGATCGGTCCGAAGGGTGAAAACGTTTTTCTGATTTCTTCCTCTCCTATTTCAAAACTGATTGACCCAACATATATTCGACTCAAAAGAATAAGTGCCTGGTTCCTTTTAATTGTATTCAAGTCCTGTTGGTGCAGCTGTGCTGCTTGTTTGCTGAGTGCATTCTGAATACTTTGCTCTAAAGCATACTTCTTTGCCCTTTCAATGGCGAAACGCTGATCATCCGTCG ] [-] EMBL CD094929 [ CTTCTAAAGCAGCAGTTTGAGGAGCGTTGCTTGGTCGCCCGACCTTTAGGTTCCTGCCAGCTAGAGTGTATCCATTCATTTGATCTAATGCCAAAGAAGCAGCTTCTGGGACCTCGAACTCAACAAAAGCAAATCCCTTGTGTTTTTGTAGAACTGTATCCCAACTAAGAGCGACAGACTTGATCGGTCCGAAGGGTGAAAACGTTTTTCTGATTTCTTCCTCTCCTATTTCAAAACTGATTGACCCAACATATATTCGACTCAAAAGAATAAGTGCCTGGTTCCTTTTAATTGTATTCAAGTCCTGTTGGTGCAGCTGTGCTGCTTGTTTGCTGAGTGCATTCTGAATACTTTGCTCTAAAGCATACTTCTTTGCCCTTTCAATGGCGAAACGCTGATCATCCGTCAGAGTCAACAGTGTGAAAGGTTCTTGTTAAATATTAGTTCCAAAGTGAATAGAATCTCCCATTGGCATAAGACTAATTATACCACCAGACTTCCGTAACGCGGCCGCAACACTCAGATCTACGTTAATCATACCGGCG] [-] EMBL CD120607 [ CAGTTTGAGGAGCGTTGCTTGGTCGCCCGACCTTTAGGTTCCTGCCAGCTAGAGTGTATCCATTCATTTGATCTAATGCCAAAGAAGCAGCTTCTGGGACCTCGAACTCAACAAAAGCAAATCCCTTGTGTTTTTGTAGAACTGTATCCCAACTAAGAGCGACAGACTTGATCGGTCCGAAGGGTGAAAACGTTTTTCTGATTTCTTCCTCTCCTATTTCAAAACTGATTGACCCAACATATATTCGACTCAAAAGAATAAGTGCCTGGTTCCTTTTAATTGTATTCAAGTCCTGTTGGTGCAGCTGTGCTGCTTGTTTGCTGAGTGCATTCTGAATACTTTG ] consensusID : consensus_7722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 429 fasta sequence [CCAGTGGAGGTTGTGGGACGATTTGCTCCATTAAGACTGTTCGAACTAATTTCCTCAGCGGACAGTGTCATAACTTTAGCGGAAATTGATGCGGCTGCAAACGCGACAGCCGAAGTAGATATTGGATTGGTGGAAATTGTATTTAAACTTTTGTTAGCATTAAGTTCGAACGGGAGAGGAACTCCTTTGGGAGTAAGTGCGCGTCCAACACGAAGTTGTTGTCCCGCCAAGTCGAAACAATTCATGCTTGAGACGGCCGCGATAGCAGCTTCTTCCGATTCGAAATCAATATAACCGAATCCCCGATGACGACCAGAACATTTAGGATCTGGATACAAGCTGATCGAATAGCGTAGGCAAGAAGTTGCGGAAAATTAACGTCACCAGAATTCTTGACCAGATGGTAGACAGCACCTAATGGCTTGACTA] [+] EMBL CD117074 [CCAGTGGAGGTTGTGGGACGATTTGCTCCATTAAGACTGTTCGAACTAATTTCCTCAGCGGACAGTGTCATAACTTTAGCGGAAATTGATGCGGCTGCAAACGCGACAGCCGAAGTAGATATTGGATTGGTGGAAATTGTATTTAAACTTTTGTTAGCATTAAGTTCGAACGGGAGAGGAACTCCTTTGGGAGTAAGTGCGCGTCCAACACGAAGTTGTTGTCCCGCCAAGTCGAAACAATTCATGCTTGAGACGGCCGCGATAGCAGCTTCTTCCGATTCGAAATCAATATAACCGAATCCCCGATGACGACCAGAACATTTAGGATCTGGATACAAGCTGATCGAATAGCGTAGGCAAGAAGTTGCGGAAAATTAACGTCACCAGAATTCTTGACCAGATGGTAGACAGCACCTAATGGCTTGACT ] [-] EMBL CD117605 [ CAGTGGAGGTTGTGGGACGATTTGCTCCATTAAGACTGTTCGAACTAATTTCCTCAGCGGACAGTGTCATAACTTTAGCGGAAATTGATGCGGCTGCAAACGCGACAGCCGAAGTAGATATTGGATTGGTGGAAATTGTATTTAAACTTTTGTTAGCATTAAGTTCGAACGGGAGAGGAACTCCTTTGGGAGTAAGTGCGCGTCCAACACGAAGTTGTTGTCCCGCCAAGTCGAAACAATTCATGCTTGAGACGGCCGCGATAGCAGCTTCTTCCGATTCGAAATCAATATAACCGAATCCCCGATGACGACCAGAACATTTAGGATCTGGATACAAGCTGATCGAATAGCGTAGGCAAGAAGTTGCGGAAAATTAACGTCACCAGAATTCTTAACCAGATGGTAGACAGCACCTAATGGCTTGACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7722#0 AGCTTCTTCTTATTCGAAATCAATATAACCGAATCCCCGATGACGACCAGAACATTTAGG 60 consensus_7722#1 ---------CCAGTGGAGGTTG-TGGGACGATTTGCTCCATTAAGACTGTTCGAACTAAT 50 * * ** * * ** * * * ** * *** * ** consensus_7722#0 ATCTGGATACAAGCTGCAGCTGTTTACTTTCCCAAATGCCTCGAATACAGTTTGAATATC 120 consensus_7722#1 TTCCTCA-GCGGACAGTGTC--ATAACTTTAGCGGAAATTGATGCGGCTGCAAACGCGAC 107 ** * * * * * * ***** * * * * * consensus_7722#0 AGACTCGGTTAACTCTGGATGAACTGAAGCAATGTATACACGAGGCTTAGTACTGACTTC 180 consensus_7722#1 AGCCGAAGTAGATATTGGATTGGTGGAAATTGTATTTAAACTTTTGTTAGCATTAA---- 163 ** * ** * ***** *** * * ** ** **** * * * consensus_7722#0 TGCGCGTAGTTCGGCTTCTAAAGCAGCAGTTTGAGGAGCGTTGCTTGGTCGCCCGACCTT 240 consensus_7722#1 --------GTTCGAACGGGAGAGGAACTCCTTTGGGAG---TAAGTGCGCGTCCAACACG 212 ***** * ** * * ** **** * ** ** ** ** consensus_7722#0 TAGGTTCCTGCCAGCTAGAGTGTATCCATTCATTTGATCTAATGCCAAAGAAGCAGCTTC 300 consensus_7722#1 AAGTTGTTGTCCCGCCAAGTCGAAACAATTCATGCTTGAGACGGCCGCGATAGCAGCTTC 272 ** * ** ** * * * * ****** * *** ********* consensus_7722#0 TGGGACCTCGAACTCAACAAAAGCAAATCCCTTGTGTTTTTGTAGAACTGTATCCCAACT 360 consensus_7722#1 TTCCGATTCGAAATCAATATAACCGAATCCCCGATGACGAC-CAGAAC---ATTTAGGAT 328 * ***** **** * ** * ****** ** ***** ** * consensus_7722#0 AAGAGCGACAGACTTGATCGGTCCGAAGGGTGAAAACGTTTTTCTGATTTCTTCCTCTCC 420 consensus_7722#1 CTGGAT-ACAAGCT-GATCGAATAGCGTAGGCAAGAAGTTGCGGAAAATTAACGTCACCA 386 * *** ** ***** * * ** * *** * ** * consensus_7722#0 TATTTCAAAACTGATTGACC--CAACATATATTCGACTCAAAAGAATAAGTGCCTGGTTC 478 consensus_7722#1 GAATTCTTGACCAGATGGTAGACAGCACCTAATGGCTTGACTA----------------- 429 * *** ** ** ** ** ** * * * * * consensus_7722#0 CTTTTAATTGTATTCAAGTCCTGTTGGTGCAGCTGTGCTGCTTGTTTGCTGAGTGCATTC 538 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 TGAATACTTTGCTCTAAAGCATACTTCTTTGCCCTTTCAATGGCGAAACGCTGATCATCC 598 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 GTCGGAGTCAACAGTGTGAAAGGTTCTTGTTAAATATTAGTTCCAAAGTGAATAGAATCT 658 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 CCCATTGGCATAAGACTAATTATACCACCAGACTTCCGTAACGCGGCCGCAACACTCAGA 718 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 TCTACGTTAATCATACCGGCG 739 consensus_7722#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||