These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7724#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 756 fasta sequence [CCCCGCGATTACCATTTTTCATCCAAAATGAGTGAACTGGATCAGCTACGGCAAGAAAGTGAACAACTCAAAAATATGATCAGGGAGGCCCGCAAAGCTGCAGCTGATACTACGCTACTTCTAGCATCTAGTAACGTGGAGCCGGTAGGACGAATTCAGTTGCGTACTCGTCGTACTTTACGGGGTCATTTGGCTAAAATTTATGCTATGCATTGGAGCACTGATTCGCGCAATCTTGTATCTGCTTCACAAGATGGCAAACTTATAGTCTGGGATGGGTATACTACTAATAAGGTTCATGCCATTCCTCTAAGAAGTAGCTGGGTCATGACATGTGCCTATGCGCCTTCCGGTAATTATGTCGCATGCGGTGGTTTGGACAACATTTGTTCCATTTAC-AATCTTAAAACACGCGAAGGCAATGTGCGTGTTAGCCGTGAGCTTCCAGGACATACAGGATATCTGTCATGTTGTCGTTTTCTTGATGACAGTCAAATT-GTAACAAGTTCTGGTGATGTGACTTGTGGACTCTGGGATATTGAAACTGGCCAACAAGTCGCTACTTTCACAGGTCATACAGGCGATGTAATGAGTCTTAGTTTGGCACCTGATCTACGGACATTTGTTTCAGGAGCTTGTGACGCATCGGCANAACTATGGGATATACGTGATGGTCAATGTAAACAAACGTTCACTGGACATGAATCAGATATCAATGCAATTATATTCTTTCCAAGTGCTTTGCTTTTGCGCTGT] [+] EMBL CD180088 [CCCCGCGATTACCATTTTTCATCCAAAATGAGTGAACTGGATCAGCTACGGCAAGAAAGTGAACAACTCAAAAATATGATCAGGGAGGCCCGCAAAGCTGCAGCTGATACTACGCTACTTCTAGCATCTAGTAACGTGGAGCCGGTAGGACGAATTCAGTTGCGTACTCGTCGTACTTTACGGGGTCATTTGGCTAAAATTTATGCTATGCATTGGAGCACTGATTCGCGCAATCTTGTATCTGCTTCACAAGATGGCAAACTTATAGTCTGGGATGGGTATACCACTAATAAGGTTCATGCCATTCCTCTAAGAAGTAGCTGGGTCATGACATGTGCCTATGCGCCTTCCGGT ATTATGTCGCATGCGGTGGTTTGGACAACATTTGTTCCATTTACAAATCTAAAc ] [+] EMBL CD154441 [ TGGAGCCGGTAGGACGAATTCAGTTGCGTACTCGTCGTACTTTACGGGGTCATTTGGCTAAAATTTATGCTATGCATTGGAGCACTGATTCGCGCAATCTTGTATCTGCTTCACAAGATGGCAAACTTATAGTCTGGGATGGGTATACTACTAATAAGGTTCATGCCATTCCTCTAAGAAGTAGCTGGATCATGACATGTGCCTATGCGCCTTCCGGTAATTATGTCGCATGCGGTGGTTTGGACAACATTTGTTCCATTTAC AATCTTAAAACACGCGAAGGCGATGTGCGTGTTAGCCGTGAGCTTCCAGGACATACAGGATATCTGTCATGTTGTCGTTTTCTTGATGACAGTCAAATT GTAACAAGTTCTGGTGATGTGACTTGTGGACTCTGGGATATTGAAACTGGCCAACAAGTCGCTACTTTCACAGGTCATACAGGCGATGTAATGAGTCTTAGTTTGGCACCTGATCTACGGACA TTGTTTCAGGAGCTTGTGACGCATCGGC NAACTATGGGATATACGTGATGGTCAATGTANACAAACGTTCACTGGACATGAATCAGAT ] [+] EMBL CD201498 [ CGGTAGGACGAATTCAGTTGCGTACTCGTCGAACTTTACGGGGTCATTTGGCTAAAATTTATGCTATGCATTGGAGCACTGATTCGCGCAATCTTGTATCTGCTTCACAAGATGGCAAACTTATAGTCTGGGATGGGTATACTACTAATAAGGTTCATGCCATTCCTCTAAGAAGTAGCTGGGTCATGACATGTGCCTATGCGCCTTCCGGTAATTATGTCGCATGCGGTGGTTTGGACAACATTTGTTCCATTTAC AATCTTAAAACACGCGAAGGCAATGTGCGTGTTAACCGTGAGCTTCCAGGACATACAGGATATCTGTCATGTTGTCGTTTTCTTGATGACAGTCAAATT GTAACAAGTTCTGGTGATGTGACTTGTGGACTCTGGGATATTGAAACTGGCCAACAAGTCGCTACTTTCACAGGTCATACAGGCGATGTAATGAGTCTTACTTTGGCACCTGATCTACAGACATTTGTTTCAGGAGCTTGTGACGCATCGGCAAAACTATGGGATATACGTGATGGTCAATGTAAACAAACGTTCAC ] [-] EMBL CD064460 [ GCAATGTGCGTGTTAGCCGTGAGCTTCCAGGACATACAGGATATCTGTCATGTTGTCGTTTTCTTGATGACAGTCAAATTGGTAACAAGTTCTGGTGATGTGACTTGTGGACTCTGGGATATTGAAACTGGCCTACAAGTCGCTACTTTCACAGGTCATACAGGCGATGTAATGAGTCTTAGTTTGGCACCTGATCTACGGACATTTGTTTCAGGAGCTTGTGACGCATCGGCATAACTATGGGATATACGTGATGGTCAATGTAAACAAACGTTCACTGGACATGAATCAGATATCAATGCAATTATATTCTTTCCAAGTGCTTTGCTTTTGCGCTGT] consensusID : consensus_7724#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence [TTGGTTGTCCCCGCGATTACCATTTTTCATCCAAAATGAGTGAACTGGATCAGCTACGGCAAGAAAGTGAACAACTCAAAAATATGATCAGGGTAAGTCTAAGAGTAAAAAATATCTGAAGTCTGTAATTTCCTTATATCACTTTTAGCCAGATAGTTAATGTCAAGGTATTTTATAGTCGCATTTTAAAAAAAATTAAACTCTTGAGAATATATAAGTGCCTCAATGTAGTTATTTTTCGATTCAAATTCTGAGTGTTTAATCTTCCTTATCACTATTGCTACCATATTATTTCAATCTCTTCTGAAATCTCTATT] [+] EMBL CD110958 [TTGGTTGTCCCCGCGATTACCATTTTTCATCCAAAATGAGTGAACTGGATCAGCTACGGCAAGAAAGTGAACAACTCAAAAATATGATCAGGGTAAGTCTAAGAGTAAAAAATATCTGAAGTCTGTAATTTCCTTATATCACTTTTAGCCAGATAGTTAATGTCAAGGTATTTTATAGTCGCATTTTAAAAAAAATTAAACTCTTGAGAATATATAAGTGCCTCAATGTAGTTATTTTTCGATTCAAATTCTGAGTGTTTAATCTTCCTTATCACTATTGCTACCATATTATTTCAATCTCTTCTGAAATCTCTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7724#0 --------CCCCGCGATTACCATTTTTCATCCAAAATGAGTGAACTGGATCAGCTACGGC 52 consensus_7724#1 TTGGTTGTCCCCGCGATTACCATTTTTCATCCAAAATGAGTGAACTGGATCAGCTACGGC 60 **************************************************** consensus_7724#0 AAGAAAGTGAACAACTCAAAAATATGATCAGGGAGGCCCGCAAAGCTGCAGCTGATACTA 112 consensus_7724#1 AAGAAAGTGAACAACTCAAAAATATGATCAGGGTAAGTCTAAGAGTAAAAAATATCTGAA 120 ********************************* * * ** * * * consensus_7724#0 CGCTACTTCTAGCATCTAGTAACGTGGAGCCGGTAGGACGAATTCAGTTGCGTACTCGTC 172 consensus_7724#1 GTCTGTAATTTCCTTATATCACTTTTAGCCAGATAGTTAATGTCAAGGTATTTTATAGTC 180 ** * * * ** * * * * *** * ** * * * *** consensus_7724#0 GTACTTTACGGGGTCATTTGGCTAAAATTTATGCTATGCATTGGAGCACTGATTCGCGCA 232 consensus_7724#1 GCATTTTAAAAAA------AATTAAACTCTTGAGAATATATAAGTGCCTCAAT----GTA 230 * * **** **** * * ** ** * ** ** * * consensus_7724#0 ATCTTGTATCTGCTTCACAAGATGGCAAACTTATAGTCTGGGATGGGTATACTACTAATA 292 consensus_7724#1 GTTATTTTTCGATTC----AAATTCTGAGTGTTTAATCTTCCTTATCACTATTGCTACCA 286 * * * ** * * ** * * ** *** * ** * *** * consensus_7724#0 AGGTTCATGCCATTCCTCTAAGAAGTAGCTGGGTCATGACATGTGCCTATGCGCCTTCCG 352 consensus_7724#1 TA--TTATTTCAATCTCTTCTGAAATCTCTATT--------------------------- 317 * ** ** ** * *** * ** consensus_7724#0 GTAATTATGTCGCATGCGGTGGTTTGGACAACATTTGTTCCATTTACAATCTTAAAACAC 412 consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 GCGAAGGCAATGTGCGTGTTAGCCGTGAGCTTCCAGGACATACAGGATATCTGTCATGTT 472 consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 GTCGTTTTCTTGATGACAGTCAAATTGTAACAAGTTCTGGTGATGTGACTTGTGGACTCT 532 consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 GGGATATTGAAACTGGCCAACAAGTCGCTACTTTCACAGGTCATACAGGCGATGTAATGA 592 consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 GTCTTAGTTTGGCACCTGATCTACGGACATTTGTTTCAGGAGCTTGTGACGCATCGGCAN 652 consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 AACTATGGGATATACGTGATGGTCAATGTAAACAAACGTTCACTGGACATGAATCAGATA 712 consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 TCAATGCAATTATATTCTTTCCAAGTGCTTTGCTTTTGCGCTGT 756 consensus_7724#1 -------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||