cluster # 7725

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Schistosoma mansoni
cluster # 7725 cluster # 7725 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7725#0 length = 381 sequences # 4

consensus_7725#1 length = 167 sequences # 1

consensusID : consensus_7725#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 381
fasta sequence

                              [CTCTACTAATATGATACGAACTTCCGAGTGACTAACAATAATCAATCGGTTTATTCAATCCTGAAAGGGAATAAGAAATCACAAAGTGGATATATTGACAAACAAGTATAGAGATGATAATCACATGAATCTAGTAACCAAACCATTTACAAACTATATTCGAAAGACATAACAAATAATAATAATAAAATACATATTACATCTTGTGATAGATAGACACATAGATAGATAGACAGACCGACGGATAATCACAAAAACTATGACATATGTCATGAATGACGTCATGTTTGTTTT-AAAAAAAAACAAAAAAACACAACAACAGATTGTGCAACTCGATGTTGATTACTCTCAAAAAGTAGAAAAGGCATTAGTTACCAATCA]

[+] EMBL CD135371             [CTCTACTAATATGATACGAACTTCCGAGTGACTAACAATAATCAATCGGTTTATTCAATCCTGAAAGGGAATAAGAAATCACAAAGTGGATATATTGACAAACAAGTATAGAGATGATAATCACATGAATCTAGTAACCAAACCATTTACAAACTATATTCGAAAGACATAACAAATAATAATAATAAAATACATATTACATCTTGTGATAGATAGACACATAGATAGATAGACAGACAGACGGATAATCACAAAAACTATGACATATGTCATGAATGACGTCATGTTTGTTTT AAAAAAAAACAAAAAAACACAACAACAGATTGTGCAACTCGATGTTGATTACTCTCAAAAAGTAGAAAAGGCATTAGTTACCAATCA]
[+] EMBL CD192545             [                                                                                                                                                                                                                                            ACCGACGGATAATCACAAAAACTATGACATATGTCATGAATGACGTCATGTTTGTTTTAAAAAAAAAACAAAAAAACACAACAACAGATTGTGCAACTCGATGTTGATTACTCTCAAAAAGTAGGAAAGGCATTAGTTACCAA   ]
[+] EMBL CD134868             [                                                                                                                                                                                                                                            ACCGACGGATAATCACAAAAACTATGACATATGTCATGAATGACGTCATGTTTGTTTT AAGAAAAAACAAAAAAACACAACAACAGAT                                                         ]
[+] EMBL CD192780             [                                                                                                                                                                                                                                            ACCGACGGATAATCACAAAAACTATGACATATGTCATGAATGACGTCATGTTTGTTTT AAAAAAAAACAAAAAAACACAACAACAGAT                                                         ]




>consensus_7725#0
CTCTACTAATATGATACGAACTTCCGAGTGACTAACAATAATCAATCGGTTTATTCAATC
CTGAAAGGGAATAAGAAATCACAAAGTGGATATATTGACAAACAAGTATAGAGATGATAA
TCACATGAATCTAGTAACCAAACCATTTACAAACTATATTCGAAAGACATAACAAATAAT
AATAATAAAATACATATTACATCTTGTGATAGATAGACACATAGATAGATAGACAGACCG
ACGGATAATCACAAAAACTATGACATATGTCATGAATGACGTCATGTTTGTTTTAAAAAA
AAACAAAAAAACACAACAACAGATTGTGCAACTCGATGTTGATTACTCTCAAAAAGTAGA
AAAGGCATTAGTTACCAATCA

consensusID : consensus_7725#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 167
fasta sequence

                              [TTTTCCAGACCACGCCGCCCCAGCCAGCCTCAAAGGCGCGGACCACGTTGTAGGCCTTGTCGGTCCGTCGCCACGACGGACCGACGGATAATCACAAAAACTATGACATATGTTATGAATGACGTGGGGTTTGTTTTAAAAAAAAATAAAAGAACACAACAACAGAT]

[+] EMBL CD134861             [TTTTCCAGACCACGCCGCCCCAGCCAGCCTCAAAGGCGCGGACCACGTTGTAGGCCTTGTCGGTCCGTCGCCACGACGGACCGACGGATAATCACAAAAACTATGACATATGTTATGAATGACGTGGGGTTTGTTTTAAAAAAAAATAAAAGAACACAACAACAGAT]




>consensus_7725#1
TTTTCCAGACCACGCCGCCCCAGCCAGCCTCAAAGGCGCGGACCACGTTGTAGGCCTTGT
CGGTCCGTCGCCACGACGGACCGACGGATAATCACAAAAACTATGACATATGTTATGAAT
GACGTGGGGTTTGTTTTAAAAAAAAATAAAAGAACACAACAACAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7725#0      CTCTACTAATATGATACGAACTTCCGAGTGACTAACAATAATCAATCGGTTTATTCAATC 60
consensus_7725#1      ------------------------------------------------------------
                                                                                  

consensus_7725#0      CTGAAAGGGAATAAGAAATCACAAAGTGGATATATTGACAAACAAGTATAGAGATGATAA 120
consensus_7725#1      ------------------------------------------------------------
                                                                                  

consensus_7725#0      TCACATGAATCTAGTAACCAAACCATTTACAAACTATATTCGAAAGACATAACAAATAAT 180
consensus_7725#1      ------------------------TTTTCCAGACCACGCC-----GCCCCAGCCAGCCTC 31
                                               *** ** ** *         * *  * * *     

consensus_7725#0      AATAATAAAATACATATTACATCTTGTGATAGATAGACACATAGATAGATAGACAGACCG 240
consensus_7725#1      AA-----AGGCGCGGACCACGTTGTAGGCCTTGTCGGTCCGTCGCCAC---GACGGACCG 83
                      **     *    *  *  ** *  *  *     * *   * * *  *    *** *****

consensus_7725#0      ACGGATAATCACAAAAACTATGACATATGTCATGAATGACGTCATGTTTGTTTTAAAAAA 300
consensus_7725#1      ACGGATAATCACAAAAACTATGACATATGTTATGAATGACGTGGGGTTTGTTTTAAAAAA 143
                      ****************************** ***********   ***************

consensus_7725#0      AAACAAAAAAACACAACAACAGATTGTGCAACTCGATGTTGATTACTCTCAAAAAGTAGA 360
consensus_7725#1      AAATAAAAGAACACAACAACAGAT------------------------------------ 167
                      *** **** ***************                                    

consensus_7725#0      AAAGGCATTAGTTACCAATCA 381
consensus_7725#1      ---------------------