These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7729#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 552 fasta sequence [AATCACAAGAGTGAGCTGATGTGGTAAGGTCAGTTATGTTTTGAATATATATACACAGAACCAAGAAAATAGATAACACTAAAATTAAGTTAAGTTGTGCATCCAAACTCATTGATCATCCAGAGCAACCACGACAACCGCAACTTTGACACTCCACAACTTTACCTTCTTCTAACTTTGACTTTGGTACTCGACATACGCAATTAGTTCCAAAATTTGTATCTCTAGATTGGATGCACCTCAAACAACACAAGTTTTCATATCCTTGTTTCTTCCATTTGGCGATTAGATTTGCATCGGCTATCTTCTCTTTGATGCAGAATTCATACAGCTCTTTAGAAATAGCTTTACGTTTATAATACAAGTCATATATGAACCGAGACCTCTTGTGATGGATGCGAAATATTGGCCACTCAGCCTCAACTTTACGCTTCCCCTCATGAGGATCAGTTTCTGCCTCACGCATCTTCCTGTTCAATTCTTCGATTGTTGGTTCGATTAACTCCCATCCTTCGGGTGGCGGTTTTTTACTCCTCCTATAAGGCGCCATTC] [+] EMBL CD140213 [AATCACAAGAGTGAGCTGATGTGGTAAGGTCAGTTATGTTTTGAATATATATACACAGAACCAAGAAAATAGATAACACTAAAATTAAGTTAAGTTGTGCATCCAAACTCATTGATCATCCAGAGCAACCACGACAACCGCAACTTTGACACTCCACAACTTTACCTTCTTCTAACTTTGACTTTGGTACTCGACATACGCAATTAGTTCCAAAATTTGTATCTCTAGATTGGATGCACCTCAAACAACACAAGTTTTCATATCCTTGTTTCTTCCATTTGGCGATTAGATTTGCATCGGCTATCTTCTCTTTGATGCAGAATTCATACAGCTCTTTAGAAATAGCTTTACGTTTATAATATAAGTCATATATGAACCGAGACCTCTTGTGAT ] [-] EMBL CD140597 [ TGGTAAGGTCAGTTATGTTTTGAATATATATACACAGAACCAAGAAAATAGATAACACTAAAATTAAGTTAAGTTGTGCATCCAAACTCATTGATCATCCAGAGCAACCACGACAACCGCAACTTTGACACTCCACAACTTTACCTTCTTCTAACTTTGACTTTGGTACTCGACATACGCAATTAGTTCCAAAATTTGTATCTCTAGATTGGATGCACCTCAAACAACACAAGTTTTCATATCCTTGTTTCTTCCATTTGGCGATTAGATTTGCATCGGCTATCTTCTCTTTGATGCAGAATTCATACAGCTCTTTAGAAATAGCTTTACGTTTATAATACAAGTCATATATG ] [+] EMBL CD162825 [ GACAACCGCAACTTTGACACTCCACAACTTTACCTTCTTCTAACTTTGACTTTGGTACTCGGCATACGCAATTAGTTCCAAAATTTGTATCTCTAGATTGGATGCACCTCAAACAACACGAGTTTTCATATCCTTGTTTCTTCCATTTGGCGATTAGATTTGCATCGGCTATCTTCTCTTTGATGCAGAATTCATACAGCTCTTTAGAAATAGCTTTACGTTTATAATACAAGTCATATATGAACCGAGACCTCTTATGATGGATGCGAAATATTGGCCACTCAGCCTCAACTTTACGCTTCCCCTCATGAGGATCAGTTTCTGCCTCACGCATCTTCCTGTTCAATTCTTCGATTGTTGGTTCGATTAACTCCCATCCTTCGGGTGGCGGTTTTTTACTCCTCCTATAAGGCGCCATTC] [+] EMBL CD194112 [ CCAAAATTTGTATCTCTAGATTGGATGCACCTCAAACAACACAAGTTTTCATATCCTTGTTTCTTCCATTTGGCGATTAGATTTGCATCGGCTATCTTCTCTTTGATGCAGAATTCATACAGCTCTTTAGAAATAGCTTTACGTTTATAATACAAGTCATATAT ] consensusID : consensus_7729#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [AACCTTTGACCTTTGGGAACTNGAAAAAACGNCAANAAGTTCCCCAAATTTGTATCTCCAAGGANTGGATGCACCCCAAACCAANACAAGTTNTCATATCCTTGTTTCTTCCATTTGGCGAATAGANTTTGCATNGGCTATCTTCTCTTTGATGCAGNATTCANACAGCTCTTTAGAAATAGCTTTACGTTTATAATACAAGTCATATATGAACCGAGACCTCTTATGATGGATGCGAAANATTGGCCANTCAGCCTCAACTTTACGCTTCCCCTCATGAGGATCAGTTTCTGCCTCACGCATCTTCCTGTTCAATTCNTCGATTGTTGGTTCGANTAACTCCCATC] [-] EMBL SM270 [AACCTTTGACCTTTGGGAACTNGAAAAAACGNCAANAAGTTCCCCAAATTTGTATCTCCAAGGANTGGATGCACCCCAAACCAANACAAGTTNTCATATCCTTGTTTCTTCCATTTGGCGAATAGANTTTGCATNGGCTATCTTCTCTTTGATGCAGNATTCANACAGCTCTTTAGAAATAGCTTTACGTTTATAATACAAGTCATATATGAACCGAGACCTCTTATGATGGATGCGAAANATTGGCCANTCAGCCTCAACTTTACGCTTCCCCTCATGAGGATCAGTTTCTGCCTCACGCATCTTCCTGTTCAATTCNTCGATTGTTGGTTCGANTAACTCCCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7729#0 AATCACAAGAGTGAGCTGATGTGGTAAGGTCAGTTATGTTTTGAATATATATACACAGAA 60 consensus_7729#1 ------------------------------------------------------------ consensus_7729#0 CCAAGAAAATAGATAACACTAAAATTAAGTTAAGTTGTGCATCCAAACTCATTGATCATC 120 consensus_7729#1 ------------------------------------------------------------ consensus_7729#0 CAGAGCAACCACGACAACCGCAACTTTGACACTCCACAACTTTACCTTCTTCTAACTTTG 180 consensus_7729#1 ----------------------------------------------------AACCTTTG 8 * ***** consensus_7729#0 ACTTT--GGTACTCGACATAC--GCAATTAGTTCCA-AAATTTGTATCTCTA--GATTGG 233 consensus_7729#1 ACCTTTGGGAACTNGAAAAAACGNCAANAAGTTCCCCAAATTTGTATCTCCAAGGANTGG 68 ** ** ** *** ** * * *** ****** ************* * ** *** consensus_7729#0 ATGCACCTCAAAC-AACACAAGTTTTCATATCCTTGTTTCTTCCATTTGGCGATTAGATT 292 consensus_7729#1 ATGCACCCCAAACCAANACAAGTTNTCATATCCTTGTTTCTTCCATTTGGCGAATAGANT 128 ******* ***** ** ******* **************************** **** * consensus_7729#0 T-GCATCGGCTATCTTCTCTTTGATGCAGAATTCATACAGCTCTTTAGAAATAGCTTTAC 351 consensus_7729#1 TTGCATNGGCTATCTTCTCTTTGATGCAGNATTCANACAGCTCTTTAGAAATAGCTTTAC 188 * **** ********************** ***** ************************ consensus_7729#0 GTTTATAATACAAGTCATATATGAACCGAGACCTCTTGTGATGGATGCGAAATATTGGCC 411 consensus_7729#1 GTTTATAATACAAGTCATATATGAACCGAGACCTCTTATGATGGATGCGAAANATTGGCC 248 ************************************* ************** ******* consensus_7729#0 ACTCAGCCTCAACTTTACGCTTCCCCTCATGAGGATCAGTTTCTGCCTCACGCATCTTCC 471 consensus_7729#1 ANTCAGCCTCAACTTTACGCTTCCCCTCATGAGGATCAGTTTCTGCCTCACGCATCTTCC 308 * ********************************************************** consensus_7729#0 TGTTCAATTCTTCGATTGTTGGTTCGATTAACTCCCATCCTTCGGGTGGCGGTTTTTTAC 531 consensus_7729#1 TGTTCAATTCNTCGATTGTTGGTTCGANTAACTCCCATC--------------------- 347 ********** **************** *********** consensus_7729#0 TCCTCCTATAAGGCGCCATTC 552 consensus_7729#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||