These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_773#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [ATATCTAAAGAATAACTTAGTGTCTTTAGTAAATAATTTTCATAAATTATATTTTCAATACTTTTTGTTCACGGAAATTATGCAAGACACTATTTCTCTAGAATTCAATGGAAACATGTTATACTTGAGTGGAATTCATTGCAAAAAATTAAATGAATGTCCGTCAATGTTTAAAAGAATAAATTGACAAAAATTGAACCGCAAGTATACATAAGCAAATTTGTAAAAATTATATTTAACAATAATCTCAGAAACTAAAATATGGCATGGTAAGCAAAGATGGCTAGTGACTAGTAGTGGAATCCAGGACGCGCGTTTCGTCCTATTTAGGACTAGTCAGCTGAATGTACCTGCATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCTAGTACCTTTCGCTTCAAACGCAATCGCGTTATCCACTCGGCCACTGAGTCCTGATAGCGACTTGCTGCTAGCCACTACCCGTCTTTGCTTACCATGC] [+] EMBL CD069145 [ATATCTAAAGAATAACTTAGTGTCTTTAGTAAATAATTTTCATAAATTATATTTTCAATACTTTTTGTTCACGGAAATTATGCAAGACACTATTTCTCTAGAATTCAATGGAAACATGTTATACTTGAGTGGAATTCATTGCAAAAAATTAAATGAATGTCCGTCAATGTTTAAAAGAATAAATTGACAAAAATTGAACCGCAAGTATACATAAGCAAATTTGTAAAAATTATATTTAACAATAATCTCAGAAACTAAAATATGGCATGGTAAGCAAAGATGGCTAGTGACTAGTAGTGGAATCCAGGACGCGCGTTTCGTCCTATTTAGGACTAGTCAGCTGAATGTACCTGCATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCTAGTACCTTTCGCTTCAAACGCAATCGCGTTATCCACTCGGCCACTGAGTCCTGATAGCGACTTGCTGCTAGCCACTACCCGTCTTTGCTTACCATGC] consensusID : consensus_773#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 235 fasta sequence [TTGTGTAGTCGTAGTAGTCACATTGTGCTAGTAAAGAGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATCGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGGAACTGAACTTGTTGTGGAATGGAGCGATAGACGGTGACCACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAATGACTGAGGGAAGTATTG] [+] EMBL CD181171 [TTGTGTAGTCGTAGTAGTCACATTGTGCTAGTAAAGAGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATCGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGGAACTGAACTTGTTGTGGAATGGAGCGATAGACGGTGACCACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAATGACTGAGGGAAGTATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_773#0 ATATCTAAAGAATAACTTAGTGTCTTTAGTAAATAATTTTCATAAATTATATTTTCAATA 60 consensus_773#1 -----------------------------------------------------TTGTGTA 7 ** ** consensus_773#0 CTTTTTGTTCACGGAAATTATGCAAGACACTATTTCTCTAGAATTCAATGGAAACATGTT 120 consensus_773#1 GTCGTAGT--AGTCACATTGTGCTAGTAAAGAGGTGCGTGACCGAGCAAGCAAGCGTGTG 65 * * ** * * *** *** ** * * * * * * ** * *** consensus_773#0 ATACTTGAGTGGAATTCATTGCAAAAAATTAAATGAATGTCCGTCAATGTTTAAAAGAAT 180 consensus_773#1 G---GTGAATGAATCGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAAT 122 *** ** * *** * *** * * * * * * *** consensus_773#0 AAATTGACAAAAATTGAACCGCAAGTATACATAAGCAAATTTGTAAAAATTATATTTAAC 240 consensus_773#1 CAACCG---GGAACTGAACTTGTTGTGGA-ATGGAGCGATAGACGGTGACCAC-TGAGAG 177 ** * ** ***** ** * ** ** * * * * consensus_773#0 AATAATCTCAGAAACTAAAATATGGCATGGTAAGCAAAGATGGCTAGTGACTAGTAGTGG 300 consensus_773#1 ATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAATGACT-GAGGGAAGTATTG- 235 * * * * * **** ** * * * * *** ** * * **** ** consensus_773#0 AATCCAGGACGCGCGTTTCGTCCTATTTAGGACTAGTCAGCTGAATGTACCTGCATCTCA 360 consensus_773#1 ------------------------------------------------------------ consensus_773#0 GAGTTGATGTTCACTCTGGGACTCGAACCTAGTACCTTTCGCTTCAAACGCAATCGCGTT 420 consensus_773#1 ------------------------------------------------------------ consensus_773#0 ATCCACTCGGCCACTGAGTCCTGATAGCGACTTGCTGCTAGCCACTACCCGTCTTTGCTT 480 consensus_773#1 ------------------------------------------------------------ consensus_773#0 ACCATGC 487 consensus_773#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||