These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7740#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [ATAGTGCACAGTAGGTCAGNTAACCTGGNTTATCAATGAGGNAATTGTAAGGTGCAGATGTAAAAAAATCCCTAAAATCAATAGCTCTTTTTAATGGTATCTTCAAAGGTCTGTGTGCTTATCATTACGAAGAAGTACCAGGCTGATGGTATGCCAGTTTCAGTTTGGAAAGGACAGGAGGCTAGNTGATCCAACTTTCGAGAGCGCCGACAGGTGGAGCTTCAATCATTTGGTTGAGGTGATGAATTCCATTAGCTGATGATTCTATGGGAAAAGTCGTTAGNCAGCTGACAAAATGTCTGTGGCGCAATTATCTGCTTCAGAAGACAAGCAAAATAAGGGCGAGTCAGA] [+] EMBL SM884 [ATAGTGCACAGTAGGTCAGNTAACCTGGNTTATCAATGAGGNAATTGTAAGGTGCAGATGTAAAAAAATCCCTAAAATCAATAGCTCTTTTTAATGGTATCTTCAAAGGTCTGTGTGCTTATCATTACGAAGAAGTACCAGGCTGATGGTATGCCAGTTTCAGTTTGGAAAGGACAGGAGGCTAGNTGATCCAACTTTCGAGAGCGCCGACAGGTGGAGCTTCAATCATTTGGTTGAGGTGATGAATTCCATTAGCTGATGATTCTATGGGAAAAGTCGTTAGNCAGCTGACAAAATGTCTGTGGCGCAATTATCTGCTTCAGAAGACAAGCAAAATAAGGGCGAGTCAGA] consensusID : consensus_7740#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [AAAAATCAAGATGTTTGATTAGACAATTTAGGTTGTTGACGAATAAGACTAACTGTATTAACTGAAGTATTTGCAAAGCCTCGTAATAAAGGTTCACATAAGATTCTGATTTGTGTATTGAACACAGCAGGCCAAAAACCTGGATTATCAATGAGGAATTGAAGGTGCAGATGTAAAAAAATCCCTAAAATCAATAGCTCTTTTTAATGGTATCTTCAAAGGTCTGTGTGCTTATCATTACGAAGAAGTACCAGGCTGATGGTATGCCAGGTTGGATCATCTTCTAAATATATCTTTCAACTCCTTAAGTATATGTTTCAATC] [+] EMBL CD188903 [AAAAATCAAGATGTTTGATTAGACAATTTAGGTTGTTGACGAATAAGACTAACTGTATTAACTGAAGTATTTGCAAAGCCTCGTAATAAAGGTTCACATAAGATTCTGATTTGTGTATTGAACACAGCAGGCCAAAAACCTGGATTATCAATGAGGAATTGAAGGTGCAGATGTAAAAAAATCCCTAAAATCAATAGCTCTTTTTAATGGTATCTTCAAAGGTCTGTGTGCTTATCATTACGAAGAAGTACCAGGCTGATGGTATGCCAGGTTGGATCATCTTCTAAATATATCTTTCAACTCCTTAAGTATATGTTTCAATC] consensusID : consensus_7740#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 245 fasta sequence [GCAGATGTAAAAAATCCCTAAAATCAATAGCTCTGTAAGTGTTCTACATTGGATGCTGACGACATTAGTTCTAATGGTATCTTCAAAGGTCTGTGTGCTTATCATTACGAAGAAGTACCAGGCTGATGCTATGCCAGGTTGGATCACTCTTCTAAATATATCTTTCAACTCCTTAAGTATATGTCTCAATCTATCCGTAACCCAGGATCGTTTTCCGAATGACTGGAAAAACGCCATACTAAGCC] [+] EMBL CD088514 [GCAGATGTAAAAAATCCCTAAAATCAATAGCTCTGTAAGTGTTCTACATTGGATGCTGACGACATTAGTTCTAATGGTATCTTCAAAGGTCTGTGTGCTTATCATTACGAAGAAGTACCAGGCTGATGCTATGCCAGGTTGGATCACTCTTCTAAATATATCTTTCAACTCCTTAAGTATATGTCTCAATCTATCCGTAACCCAGGATCGTTTTCCGAATGACTGGAAAAACGCCATACTAAGCC] consensusID : consensus_7740#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 194 fasta sequence [AGGTGATGAATTCCATTAGCTGATGATTCTATGGGAAAGTCGTTAGTCAGCTGACAAGTAAGTTGTCCTAGGCTTTTGTACTTTTTT-TAGAATGTCTTTGCGAATTATCTGCTTCAGAAGACAAGCAAAATAAGGGCGAGTCAGGTGCAGTGATTATCGGATGACAGTAATTAAATTTTTATTTGATTTATTTC] [+] EMBL CD146286 [AGGTGATGAATTCCATTAGCTGATGATTCTATGGGAAAGTCGTTAGTCAGCTGACAAGTAAGTTGTCCTAGGCTTTTGTACTTTTTT TAGAATGTCTTTGCGAATTATCTGCTTCAGAAGACAAGCAAAATAAGGGCGAGTCAGGTGCAGTGATTATCGGATGACAGTAATTAAATTTTTATTTGATTTATTTC] [+] EMBL CD146346 [AGGTGATGAATTCCATTAGCTGATGATTCTATGGGAAAGTCGCTAGTCAGCTGACAAGTAAGTTGTCCTAGGCTTTTGTACTTTTTTCTAGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7740#0 ------------------------------------------------------------ consensus_7740#3 ------------------------------------------------------------ consensus_7740#1 AAAAATCAAGATGTTTGATTAGACAATTTAGGTTGTTGACGAATAAGACTAACTGTATTA 60 consensus_7740#2 ------------------------------------------------------------ consensus_7740#0 ------------------------------------------------------ATAGTG 6 consensus_7740#3 -----------------------------------------------------------A 1 consensus_7740#1 ACTGAAGTATTTGCAAAGCCTCGTAATAAAGGTTCACATAAGATTCTGATTTGTGTATTG 120 consensus_7740#2 ------------------------------------------------------------ consensus_7740#0 CACAGTAGGTCAGNTAACCTGGNTTATCAATGAGGNAATTGTAAGGT-GCAGATGTAAAA 65 consensus_7740#3 GGTGATGAATTCCATTAGCTGATGATTCTATGGGAAAGTCGTTAGTCAGCTGACAAGTAA 61 consensus_7740#1 AACACAGCAGGCCAAAAACCTGGATTATCAATGAGGAATTGAAGGT--GCAGATGTAAAA 178 consensus_7740#2 ---GCAG-ATGTAAAAAATCCCTAAAATCAATA--GCTCTGTAAGT--GT---TCTACAT 49 * * * * * * consensus_7740#0 AAATCCCTAAAATCAATAGCTCTTTTTAATGGTATCTTCAAAGGTCTGTGTGCTTATCAT 125 consensus_7740#3 GTTGTCCTAGGCTTTTGTACTTTTTTTAG-AATGTCTTTGCGAAT-TATCTGCTTCAGAA 119 consensus_7740#1 AAATCCCTAAAATCAATAGCTCTTTTTAATGGTATCTTCAAAGGTCTGTGTGCTTATCAT 238 consensus_7740#2 TGGATGCTGACGACATTAGTTCT----AATGGTATCTTCAAAGGTCTGTGTGCTTATCAT 105 ** * * * * **** * * * ***** * consensus_7740#0 TACGAAGAAGTACCAGGCTGAT--GGTATGCCAGTT-TCAGTTTGGAAAGGACAGGAGGC 182 consensus_7740#3 GACAAGCAAAATAAGGGCGAGTCAGGTGCAGTGATTATCGGATGACAGTAATTAAATTTT 179 consensus_7740#1 TACGAAGAAGTACCAGGCTGAT--GGTATGCCAGGT--TGGATCA-TCTTCTAAATATAT 293 consensus_7740#2 TACGAAGAAGTACCAGGCTGAT--GCTATGCCAGGT--TGGATCACTCTTCTAAATATAT 161 ** * ** *** * * * * * * * consensus_7740#0 TAGNTGATCCAACTTTCGAGAGCGCCGACAGGTGGAGCTTCAATCATTTGGTTGAGGTGA 242 consensus_7740#3 TATTTGATTTATTTC--------------------------------------------- 194 consensus_7740#1 CTTTCAACTCCTTAAGTATATGTTTCAATC------------------------------ 323 consensus_7740#2 CTTTCAACTCCTTAAGTATATGTCTCAATCTATCCGTAACCCAGGATCGTTTTCCGAATG 221 * consensus_7740#0 TGAATTCCATTAGCTGATGATTCTATGGGAAAAGTCGTTAGNCAGCTGACAAAATGTCTG 302 consensus_7740#3 ------------------------------------------------------------ consensus_7740#1 ------------------------------------------------------------ consensus_7740#2 ACTGGAAAAACGCCATACTAAGCC------------------------------------ 245 consensus_7740#0 TGGCGCAATTATCTGCTTCAGAAGACAAGCAAAATAAGGGCGAGTCAGA 351 consensus_7740#3 ------------------------------------------------- consensus_7740#1 ------------------------------------------------- consensus_7740#2 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||