These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7745#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 441 fasta sequence [TTTTTTTTTTTTTTTTGAAAGTATATATGTATATATTTAGAGTTATCTCATTGTTTGTTTGTTGGTTCACATTTGCTCATTGAACTAGAGTCGCCGGATTTCCCCAACCATTCATCGTTATAAGCGCTAAAATCAGGTGACTCAACAAAAGGGAAACAAAATTCTCCAATTTTCATAAGCTGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGAACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTACGCGTGATAGGACCCAGCTCCAGAACTATGGGAACACATGATACACGTTTCAGGTTGAGTTTCAGATCTTTTAGAAATATG] [+] EMBL AI394928 [TTTTTTTTTTTTTTTTGAAAGTATATATGTATATATTTAGAGTTATCTCATTGTTTGTTTGTTGGTTCACATTTGCTCATTGAACTAGAGTCGCCGGATTTCCCCAACCATTCATCGTTATAAGCGCTAAAATCAGGTGACTCAACAAAAGGGAAACAAAATTCTCCAATTTTCATAAGCTGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGAACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTACGCGTGATAGGACCCAGCTCCAGAACTATGGGAACACATGATACACGTTTCAGGTTGAGTTTCAGATCTTTTAGAAATATG] [+] EMBL AI395342 [TTTTTTTTTTTTTTTTGAAAGTATATATGTATATATTTAGAGTTATCTCATTGTTTGTTTGTTGGTTCACATTTGCTCATTGAACTAGAGTCGCCGGATTTCCCCAACCATTCATCGTTATAAGCGCTAAAATCAGGTGACTCAACAAAAGGGAAACAAAATTCTCCAATTTTCATAAGCTGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGAACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTAC ] [+] EMBL AI395326 [TTTTTTTTTTTTTTTTGAAAGTATATATGTATATATTTAGAGTTATCTCATTGTTTGTTTGTTGGTTCACATTTGCTCATTGAACTAGAGTCGCCGGATTTCCCCAACCATTCATCGTTATAAGCGCTAAAATCAGGTGACTCAACAGAAGGGAAACAAAATTCTCCAATTTTCATAAGCTGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGAACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAATTTC ] [-] EMBL BG930608 [ TCAACAAAAGGGAAACAAAATTCTCCAATTTTCATAAGCTGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGAACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCATTCGTACGCGTGATAGGAC ] consensusID : consensus_7745#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence [GAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTACGCGTGATAGGACCTTGTGACATAGTATAAATTGTAGTCTAAGCAAACAACAAACCCAGCTCCAAAACTATAAAAACACATGATACACGTTTCATGTTGGGTTTCAGATCTTTTAAAAAATATGACTGGTCCT] [-] EMBL CD169816 [GAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTACGCGTGATAGGACCTTGTGACATAGTATAAATTGTAGTCTAAGCAAACAACAAACCCAGCTCCAAAACTATAAAAACACATGATACACGTTTCATGTTGGGTTTCAGATCTTTTAAAAAATATGACTGGTCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7745#0 TTTTTTTTTTTTTTTTGAAAGTATATATGTATATATTTAGAGTTATCTCATTGTTTGTTT 60 consensus_7745#1 ------------------------------------------------------------ consensus_7745#0 GTTGGTTCACATTTGCTCATTGAACTAGAGTCGCCGGATTTCCCCAACCATTCATCGTTA 120 consensus_7745#1 ------------------------------------------------------------ consensus_7745#0 TAAGCGCTAAAATCAGGTGACTCAACAAAAGGGAAACAAAATTCTCCAATTTTCATAAGC 180 consensus_7745#1 ------------------------------------------------------------ consensus_7745#0 TGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGA 240 consensus_7745#1 ------------------------------------------------------------ consensus_7745#0 ACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATA 300 consensus_7745#1 ---------------------------------GAACTATTCTCATTCCAAACAGATATA 27 *************************** consensus_7745#0 TTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTA 360 consensus_7745#1 TTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTA 87 ************************************************************ consensus_7745#0 CGCGTGATAGGACC------------------------------------------CAGC 378 consensus_7745#1 CGCGTGATAGGACCTTGTGACATAGTATAAATTGTAGTCTAAGCAAACAACAAACCCAGC 147 ************** **** consensus_7745#0 TCCAGAACTATGGGAACACATGATACACGTTTCAGGTTGAGTTTCAGATCTTTTAGAAA- 437 consensus_7745#1 TCCAAAACTATAAAAACACATGATACACGTTTCATGTTGGGTTTCAGATCTTTTAAAAAA 207 **** ****** ******************** **** *************** *** consensus_7745#0 TATG--------- 441 consensus_7745#1 TATGACTGGTCCT 220 **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||