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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7745 cluster # 7745       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7745#0 length = 441 sequences # 4  
consensus_7745#1 length = 220 sequences # 1  

consensusID : consensus_7745#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 441
fasta sequence
                              [TTTTTTTTTTTTTTTTGAAAGTATATATGTATATATTTAGAGTTATCTCATTGTTTGTTTGTTGGTTCACATTTGCTCATTGAACTAGAGTCGCCGGATTTCCCCAACCATTCATCGTTATAAGCGCTAAAATCAGGTGACTCAACAAAAGGGAAACAAAATTCTCCAATTTTCATAAGCTGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGAACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTACGCGTGATAGGACCCAGCTCCAGAACTATGGGAACACATGATACACGTTTCAGGTTGAGTTTCAGATCTTTTAGAAATATG]

[+] EMBL AI394928             [TTTTTTTTTTTTTTTTGAAAGTATATATGTATATATTTAGAGTTATCTCATTGTTTGTTTGTTGGTTCACATTTGCTCATTGAACTAGAGTCGCCGGATTTCCCCAACCATTCATCGTTATAAGCGCTAAAATCAGGTGACTCAACAAAAGGGAAACAAAATTCTCCAATTTTCATAAGCTGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGAACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTACGCGTGATAGGACCCAGCTCCAGAACTATGGGAACACATGATACACGTTTCAGGTTGAGTTTCAGATCTTTTAGAAATATG]
[+] EMBL AI395342             [TTTTTTTTTTTTTTTTGAAAGTATATATGTATATATTTAGAGTTATCTCATTGTTTGTTTGTTGGTTCACATTTGCTCATTGAACTAGAGTCGCCGGATTTCCCCAACCATTCATCGTTATAAGCGCTAAAATCAGGTGACTCAACAAAAGGGAAACAAAATTCTCCAATTTTCATAAGCTGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGAACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTAC                                                                                ]
[+] EMBL AI395326             [TTTTTTTTTTTTTTTTGAAAGTATATATGTATATATTTAGAGTTATCTCATTGTTTGTTTGTTGGTTCACATTTGCTCATTGAACTAGAGTCGCCGGATTTCCCCAACCATTCATCGTTATAAGCGCTAAAATCAGGTGACTCAACAGAAGGGAAACAAAATTCTCCAATTTTCATAAGCTGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGAACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAATTTC                                                                                                 ]
[-] EMBL BG930608             [                                                                                                                                             TCAACAAAAGGGAAACAAAATTCTCCAATTTTCATAAGCTGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGAACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCATTCGTACGCGTGATAGGAC                                                                    ]


>consensus_7745#0 TTTTTTTTTTTTTTTTGAAAGTATATATGTATATATTTAGAGTTATCTCATTGTTTGTTT GTTGGTTCACATTTGCTCATTGAACTAGAGTCGCCGGATTTCCCCAACCATTCATCGTTA TAAGCGCTAAAATCAGGTGACTCAACAAAAGGGAAACAAAATTCTCCAATTTTCATAAGC TGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGA ACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATA TTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTA CGCGTGATAGGACCCAGCTCCAGAACTATGGGAACACATGATACACGTTTCAGGTTGAGT TTCAGATCTTTTAGAAATATG



consensusID : consensus_7745#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence
                              [GAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTACGCGTGATAGGACCTTGTGACATAGTATAAATTGTAGTCTAAGCAAACAACAAACCCAGCTCCAAAACTATAAAAACACATGATACACGTTTCATGTTGGGTTTCAGATCTTTTAAAAAATATGACTGGTCCT]

[-] EMBL CD169816             [GAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTACGCGTGATAGGACCTTGTGACATAGTATAAATTGTAGTCTAAGCAAACAACAAACCCAGCTCCAAAACTATAAAAACACATGATACACGTTTCATGTTGGGTTTCAGATCTTTTAAAAAATATGACTGGTCCT]


>consensus_7745#1 GAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCA GTCCGAACTTCATTGCCATCTTTCGTACGCGTGATAGGACCTTGTGACATAGTATAAATT GTAGTCTAAGCAAACAACAAACCCAGCTCCAAAACTATAAAAACACATGATACACGTTTC ATGTTGGGTTTCAGATCTTTTAAAAAATATGACTGGTCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7745#0      TTTTTTTTTTTTTTTTGAAAGTATATATGTATATATTTAGAGTTATCTCATTGTTTGTTT 60
consensus_7745#1      ------------------------------------------------------------
                                                                                  

consensus_7745#0      GTTGGTTCACATTTGCTCATTGAACTAGAGTCGCCGGATTTCCCCAACCATTCATCGTTA 120
consensus_7745#1      ------------------------------------------------------------
                                                                                  

consensus_7745#0      TAAGCGCTAAAATCAGGTGACTCAACAAAAGGGAAACAAAATTCTCCAATTTTCATAAGC 180
consensus_7745#1      ------------------------------------------------------------
                                                                                  

consensus_7745#0      TGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGA 240
consensus_7745#1      ------------------------------------------------------------
                                                                                  

consensus_7745#0      ACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATA 300
consensus_7745#1      ---------------------------------GAACTATTCTCATTCCAAACAGATATA 27
                                                       ***************************

consensus_7745#0      TTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTA 360
consensus_7745#1      TTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTA 87
                      ************************************************************

consensus_7745#0      CGCGTGATAGGACC------------------------------------------CAGC 378
consensus_7745#1      CGCGTGATAGGACCTTGTGACATAGTATAAATTGTAGTCTAAGCAAACAACAAACCCAGC 147
                      **************                                          ****

consensus_7745#0      TCCAGAACTATGGGAACACATGATACACGTTTCAGGTTGAGTTTCAGATCTTTTAGAAA- 437
consensus_7745#1      TCCAAAACTATAAAAACACATGATACACGTTTCATGTTGGGTTTCAGATCTTTTAAAAAA 207
                      **** ******   ******************** **** *************** *** 

consensus_7745#0      TATG--------- 441
consensus_7745#1      TATGACTGGTCCT 220
                      ****         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)