These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7748#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 687 fasta sequence [GGGATGTTTCTTGACGATGAATAGTATTAACACTAACCAGTGCTGATGACTGTTGTGACTTTAACTTATTTCTAAAAGCTAGCCTTTCCGATTTACGTGGTCTTGCTCGTTCCATCGGAGTAATTATTGATTCATCTTGGTCGTCGTGAAGCGTTAAGTTGTCGGAGCCAGATGGTTTATTATTATTTCCTAGTTCGTGTGACACTGGATATTCTCTTGTAGCTAGTTTGCGAGAACCACTCCTTTCATTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAGATTTAGAGCCACTTGAATTGGTGGAAGAGAAATCTGAATATCTGCTATTCATACCCTCTTCAATATTTTCTGAACTACTTGTTCGTATTATGGTTGAACTTTCAACTTTTGATGATAAACGATCTAACATGGGATGCATATTGCGAATTTTCGGAGCCGTTAAACGATTTGACGATTCCAAGGATGAATTAAATTTTGATGATCCTAAAGGGAGGCGAGACATATTCGGTGACATCCAAGTATCGTGTAGTCGATCCGTACGATAACTGCCGTCATATAAAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATTGGACGGATTTGGTC] [+] EMBL CD187292 [GGGATGTTTCTTGACGATGAATAGTATTAACACTAACCAGTGCTGATGACTGTTGTGACTTTAACTTATTTCTAAAAGCTAGCCTTTCCGATTTACGTGGTCTTGCTCGTTCCATCGGAGTAATTATTGATTCATCTTGGTCGTCGTGAAGCGTTAAGTTGTCGGAGCCAGATGGTTTATTATTATTTCCTAGTTCGTGTGACACTGGATATTCTCTTGTAGCTAGTTTGCGAGAACCACTCCTTTCATTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAG ] [+] EMBL CD140215 [ CGAGAACCACTCCTTTCATTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAGATTTAGAGCCACTTGAATTGGTGGAAGAGAAATCTGAATATCTGCTATTCATACCCTCTTCAATATTTTCTGAACTACTTGTTCGTATTATGGTTGAACTTTCAACTTTTGATGATAAACGATCTAACATGGGATGCATATTGCGAATTTTCGGAGCCGTTAAACGATTTGACGATTCCAAGGATGAATTAAATTTTGATGATCCTAAAGGGAGGCGAGACATATTCGGTGACATCCAAGTATCGTGTAGTCGATCCGTACGATAACTGCCGTCATATAAAGTCTCCTTGTAAATAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATTGGACGGATTTGGTC] [+] EMBL CD140111 [ CGAGAACCACTCCTTTCGTTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAGATTTAGAGCCACTTGAATTGGTGGAAGAGAAATCTGAATATCTGCTATTCATACCCTCTTCAATATTTTCTGAACTACTTGTTCGTATTATGGTTGAACTTTCAACTTTTGATGATAAACGATCTAACATGGGATGCATATTGCGAATTTTCGGAGCCGTTAAACGATTTGACGATTCCAAGGATGAATTAAATTTTGATGATCCTAAAGGGAGGCGAGACATATTCGGTGACATCCAAGTATCGTGTAGTCGATCCGTACGATAACTGCCGTCATATAAAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATTGGAC ] [+] EMBL CD140227 [ CGAGAACCACTCCTTTCATTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAGATTTAGAGCCACTTGAATTGGTGGAAGAGAAATCTGAATATCTGCTATTCATACCCTCTTCAATATTTTCTGAACTACTTGTTCGTATTATGGTTGAACTTTCAACTTTTGATGATAAACGATCTAACATGGGATGCATATTGCGAATTTTCGGAGCCGTTAAACGATTTGACGATTCCAAGGATGAATTAAATTTTGTTGATCCTAAAGGGAGGCGAGACATATTCGGTGACATCCAAGTATCGTGTAGTCGATCCGTACGATAACTGCCGTCATATAAAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATT ] consensusID : consensus_7748#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence [ATATAAAAGTGTTTNTTAGATAAAAATTATGCATCCTTGAAATTTCGGACGACAGACATTTTTCAGCCCTGTAGTCAGACACGTTACAACTTATATGAGACAGCAAGTGACTCTCCAAAGTTGGGATAAAGGTATTAAACTATCGCCATACGTAAAATCAGTACGCTTTGTCTCATATAGAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATTGGACGGATTTGGTCGCTTCCAGATATCGAACATTTATTCAT] [-] EMBL CD196314 [ATATAAAAGTGTTTNTTAGATAAAAATTATGCATCCTTGAAATTTCGGACGACAGACATTTTTCAGCCCTGTAGTCAGACACGTTACAACTTATATGAGACAGCAAGTGACTCTCCAAAGTTGGGATAAAGGTATTAAACTATCGCCATACGTAAAATCAGTACGCTTTGTCTCATATAGAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATTGGACGGATTTGGTCGCTTCCAGATATCGAACATTTATTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7748#0 GGGATGTTTCTTGACGATGAATAGTATTAACACTAACCAGTGCTGATGACTGTTGTGACT 60 consensus_7748#1 ------------------------------------------------------------ consensus_7748#0 TTAACTTATTTCTAAAAGCTAGCCTTTCCGATTTACGTGGTCTTGCTCGTTCCATCGGAG 120 consensus_7748#1 ------------------------------------------------------------ consensus_7748#0 TAATTATTGATTCATCTTGGTCGTCGTGAAGCGTTAAGTTGTCGGAGCCAGATGGTTTAT 180 consensus_7748#1 ------------------------------------------------------------ consensus_7748#0 TATTATTTCCTAGTTCGTGTGACACTGGATATTCTCTTGTAGCTAGTTTGCGAGAACCAC 240 consensus_7748#1 ------------------------------------------------------------ consensus_7748#0 TCCTTTCATTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAGATTTAGAGCCACTTG 300 consensus_7748#1 ------------------------------------------------------------ consensus_7748#0 AATTGGTGGAAGAGAAATCTGAATATCTGCTATTCATACCCTCTTCAATATTTTCTGAAC 360 consensus_7748#1 ---------------------------------------------------------ATA 3 * consensus_7748#0 TACTTGTTCGTATTATGGTTGAACTTTCAACTTTTGATGATAAACGATCTAACATGGGAT 420 consensus_7748#1 TAAAAGTGTTTNTTAGATAAAAATTATGCATCCTTGA--------AATTTCGGACGACAG 55 ** ** * *** ** * * * **** ** * * * * consensus_7748#0 GCATATTGCGAATTTTCGGAGCCGTTAAACGATTTGACGATTCCAAGGATGAATTAAATT 480 consensus_7748#1 ACATTTTTCAGCCCT-----GTAGTCAGACACGTT-ACAACTTATATGAGACAGCAAGT- 108 *** ** * * * ** * ** ** ** * * * ** * ** * consensus_7748#0 TTGATGATCCTAAAGGGAGGCGAGACATATTCGGTGACATCCAAGTATCGTGTAGTCGAT 540 consensus_7748#1 --GACTCTCC-AAAGTTGGGATAAAGGTATTAAACTATCGCCA-----TACGTAA--AAT 158 ** *** **** ** * * **** * *** *** ** consensus_7748#0 CCGTACGATAACTGCCGTCATATAAAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGG 600 consensus_7748#1 CAGTACGCT--TTGTC-TCATATAGAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGG 215 * ***** * ** * ******* *********************************** consensus_7748#0 AGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTT 660 consensus_7748#1 AGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTT 275 ************************************************************ consensus_7748#0 TAACTGTTGAATTGGACGGATTTGGTC--------------------------- 687 consensus_7748#1 TAACTGTTGAATTGGACGGATTTGGTCGCTTCCAGATATCGAACATTTATTCAT 329 *************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||