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Schistosoma mansoni
cluster # 7748 cluster # 7748       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7748#0 length = 687 sequences # 4  
consensus_7748#1 length = 329 sequences # 1  

consensusID : consensus_7748#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 687
fasta sequence
                              [GGGATGTTTCTTGACGATGAATAGTATTAACACTAACCAGTGCTGATGACTGTTGTGACTTTAACTTATTTCTAAAAGCTAGCCTTTCCGATTTACGTGGTCTTGCTCGTTCCATCGGAGTAATTATTGATTCATCTTGGTCGTCGTGAAGCGTTAAGTTGTCGGAGCCAGATGGTTTATTATTATTTCCTAGTTCGTGTGACACTGGATATTCTCTTGTAGCTAGTTTGCGAGAACCACTCCTTTCATTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAGATTTAGAGCCACTTGAATTGGTGGAAGAGAAATCTGAATATCTGCTATTCATACCCTCTTCAATATTTTCTGAACTACTTGTTCGTATTATGGTTGAACTTTCAACTTTTGATGATAAACGATCTAACATGGGATGCATATTGCGAATTTTCGGAGCCGTTAAACGATTTGACGATTCCAAGGATGAATTAAATTTTGATGATCCTAAAGGGAGGCGAGACATATTCGGTGACATCCAAGTATCGTGTAGTCGATCCGTACGATAACTGCCGTCATATAAAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATTGGACGGATTTGGTC]

[+] EMBL CD187292             [GGGATGTTTCTTGACGATGAATAGTATTAACACTAACCAGTGCTGATGACTGTTGTGACTTTAACTTATTTCTAAAAGCTAGCCTTTCCGATTTACGTGGTCTTGCTCGTTCCATCGGAGTAATTATTGATTCATCTTGGTCGTCGTGAAGCGTTAAGTTGTCGGAGCCAGATGGTTTATTATTATTTCCTAGTTCGTGTGACACTGGATATTCTCTTGTAGCTAGTTTGCGAGAACCACTCCTTTCATTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAG                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD140215             [                                                                                                                                                                                                                                      CGAGAACCACTCCTTTCATTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAGATTTAGAGCCACTTGAATTGGTGGAAGAGAAATCTGAATATCTGCTATTCATACCCTCTTCAATATTTTCTGAACTACTTGTTCGTATTATGGTTGAACTTTCAACTTTTGATGATAAACGATCTAACATGGGATGCATATTGCGAATTTTCGGAGCCGTTAAACGATTTGACGATTCCAAGGATGAATTAAATTTTGATGATCCTAAAGGGAGGCGAGACATATTCGGTGACATCCAAGTATCGTGTAGTCGATCCGTACGATAACTGCCGTCATATAAAGTCTCCTTGTAAATAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATTGGACGGATTTGGTC]
[+] EMBL CD140111             [                                                                                                                                                                                                                                      CGAGAACCACTCCTTTCGTTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAGATTTAGAGCCACTTGAATTGGTGGAAGAGAAATCTGAATATCTGCTATTCATACCCTCTTCAATATTTTCTGAACTACTTGTTCGTATTATGGTTGAACTTTCAACTTTTGATGATAAACGATCTAACATGGGATGCATATTGCGAATTTTCGGAGCCGTTAAACGATTTGACGATTCCAAGGATGAATTAAATTTTGATGATCCTAAAGGGAGGCGAGACATATTCGGTGACATCCAAGTATCGTGTAGTCGATCCGTACGATAACTGCCGTCATATAAAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATTGGAC          ]
[+] EMBL CD140227             [                                                                                                                                                                                                                                      CGAGAACCACTCCTTTCATTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAGATTTAGAGCCACTTGAATTGGTGGAAGAGAAATCTGAATATCTGCTATTCATACCCTCTTCAATATTTTCTGAACTACTTGTTCGTATTATGGTTGAACTTTCAACTTTTGATGATAAACGATCTAACATGGGATGCATATTGCGAATTTTCGGAGCCGTTAAACGATTTGACGATTCCAAGGATGAATTAAATTTTGTTGATCCTAAAGGGAGGCGAGACATATTCGGTGACATCCAAGTATCGTGTAGTCGATCCGTACGATAACTGCCGTCATATAAAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATT              ]


>consensus_7748#0 GGGATGTTTCTTGACGATGAATAGTATTAACACTAACCAGTGCTGATGACTGTTGTGACT TTAACTTATTTCTAAAAGCTAGCCTTTCCGATTTACGTGGTCTTGCTCGTTCCATCGGAG TAATTATTGATTCATCTTGGTCGTCGTGAAGCGTTAAGTTGTCGGAGCCAGATGGTTTAT TATTATTTCCTAGTTCGTGTGACACTGGATATTCTCTTGTAGCTAGTTTGCGAGAACCAC TCCTTTCATTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAGATTTAGAGCCACTTG AATTGGTGGAAGAGAAATCTGAATATCTGCTATTCATACCCTCTTCAATATTTTCTGAAC TACTTGTTCGTATTATGGTTGAACTTTCAACTTTTGATGATAAACGATCTAACATGGGAT GCATATTGCGAATTTTCGGAGCCGTTAAACGATTTGACGATTCCAAGGATGAATTAAATT TTGATGATCCTAAAGGGAGGCGAGACATATTCGGTGACATCCAAGTATCGTGTAGTCGAT CCGTACGATAACTGCCGTCATATAAAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGG AGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTT TAACTGTTGAATTGGACGGATTTGGTC



consensusID : consensus_7748#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence
                              [ATATAAAAGTGTTTNTTAGATAAAAATTATGCATCCTTGAAATTTCGGACGACAGACATTTTTCAGCCCTGTAGTCAGACACGTTACAACTTATATGAGACAGCAAGTGACTCTCCAAAGTTGGGATAAAGGTATTAAACTATCGCCATACGTAAAATCAGTACGCTTTGTCTCATATAGAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATTGGACGGATTTGGTCGCTTCCAGATATCGAACATTTATTCAT]

[-] EMBL CD196314             [ATATAAAAGTGTTTNTTAGATAAAAATTATGCATCCTTGAAATTTCGGACGACAGACATTTTTCAGCCCTGTAGTCAGACACGTTACAACTTATATGAGACAGCAAGTGACTCTCCAAAGTTGGGATAAAGGTATTAAACTATCGCCATACGTAAAATCAGTACGCTTTGTCTCATATAGAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATTGGACGGATTTGGTCGCTTCCAGATATCGAACATTTATTCAT]


>consensus_7748#1 ATATAAAAGTGTTTNTTAGATAAAAATTATGCATCCTTGAAATTTCGGACGACAGACATT TTTCAGCCCTGTAGTCAGACACGTTACAACTTATATGAGACAGCAAGTGACTCTCCAAAG TTGGGATAAAGGTATTAAACTATCGCCATACGTAAAATCAGTACGCTTTGTCTCATATAG AGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGA TGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATTGGACGGATTTGG TCGCTTCCAGATATCGAACATTTATTCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7748#0      GGGATGTTTCTTGACGATGAATAGTATTAACACTAACCAGTGCTGATGACTGTTGTGACT 60
consensus_7748#1      ------------------------------------------------------------
                                                                                  

consensus_7748#0      TTAACTTATTTCTAAAAGCTAGCCTTTCCGATTTACGTGGTCTTGCTCGTTCCATCGGAG 120
consensus_7748#1      ------------------------------------------------------------
                                                                                  

consensus_7748#0      TAATTATTGATTCATCTTGGTCGTCGTGAAGCGTTAAGTTGTCGGAGCCAGATGGTTTAT 180
consensus_7748#1      ------------------------------------------------------------
                                                                                  

consensus_7748#0      TATTATTTCCTAGTTCGTGTGACACTGGATATTCTCTTGTAGCTAGTTTGCGAGAACCAC 240
consensus_7748#1      ------------------------------------------------------------
                                                                                  

consensus_7748#0      TCCTTTCATTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAGATTTAGAGCCACTTG 300
consensus_7748#1      ------------------------------------------------------------
                                                                                  

consensus_7748#0      AATTGGTGGAAGAGAAATCTGAATATCTGCTATTCATACCCTCTTCAATATTTTCTGAAC 360
consensus_7748#1      ---------------------------------------------------------ATA 3
                                                                               *  

consensus_7748#0      TACTTGTTCGTATTATGGTTGAACTTTCAACTTTTGATGATAAACGATCTAACATGGGAT 420
consensus_7748#1      TAAAAGTGTTTNTTAGATAAAAATTATGCATCCTTGA--------AATTTCGGACGACAG 55
                      **   **   * ***      ** * *  *   ****         ** *   * *  * 

consensus_7748#0      GCATATTGCGAATTTTCGGAGCCGTTAAACGATTTGACGATTCCAAGGATGAATTAAATT 480
consensus_7748#1      ACATTTTTCAGCCCT-----GTAGTCAGACACGTT-ACAACTTATATGAGACAGCAAGT- 108
                       *** ** *     *     *  ** * **   ** ** * *   * **   *  ** * 

consensus_7748#0      TTGATGATCCTAAAGGGAGGCGAGACATATTCGGTGACATCCAAGTATCGTGTAGTCGAT 540
consensus_7748#1      --GACTCTCC-AAAGTTGGGATAAAGGTATTAAACTATCGCCA-----TACGTAA--AAT 158
                        **   *** ****   **  * *  ****     *   ***        ***    **

consensus_7748#0      CCGTACGATAACTGCCGTCATATAAAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGG 600
consensus_7748#1      CAGTACGCT--TTGTC-TCATATAGAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGG 215
                      * ***** *   ** * ******* ***********************************

consensus_7748#0      AGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTT 660
consensus_7748#1      AGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTT 275
                      ************************************************************

consensus_7748#0      TAACTGTTGAATTGGACGGATTTGGTC--------------------------- 687
consensus_7748#1      TAACTGTTGAATTGGACGGATTTGGTCGCTTCCAGATATCGAACATTTATTCAT 329
                      ***************************                           




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)