These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7752#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 906 fasta sequence [TTGCGCGCCAACATCAATTGTTCCCTTTGGGTTGCAGTATTTCTTTCTTCGCCGGATCGCTGAAAACAAAACGTCCGTCTTATAGAGCTTCTTCTGGGTTATGTTTGGACCACACCCACCAAAATCTTTGGGATACTGTATGAAACTCGCGCTACATGAGACCCTTCATAATATAAACCAAAATATATTTCTTACGACTAGACTGTCAAGAACCAGTTATGAGAATTTGGTTGAAGTGGTTTCTCAGTTAAATCAACTGTGTATCACT-CGTTTGGAGAACAGTGTTCTATTGTAAAG-TCGCTCTAAAAAAATGCCAGGAAAACTTTTTGTGGAGATTATCAGCTAAAGTCTTCTGTAGAATTTCAAAGAAAAACCGTTCAGTATACAGAATTTTTGAGCTTATCGAATTTTTGCGGTTATATGATGAGATCATCCGCTTCAAGTCACTGATAGACTCTCAACCTGAGATGCCTGATTTTGCTAAAGAAATTTCTGATGATCCTTGTTGTATCTGTTTGGATAGAGAACCTGACACTGTTCTTGCTTGTATGCACTCATTCTGTCAACCATGTATTCACAAATGGGCCGGAATTAGTTACCAGTTGCCGTCAGCAAGTTCAGAATCGTCTGTTTCTGGTCAAGGATCCAGCAGCTGTAGACCTTCAGATACTAATCGCACACAATGCCCCATCTGTAGGTCTACGTACACAAATACCTCTACATCTTGGGAGTTGATTGGCACTCAGTCACCAAAAAATCATAGATATCAAATCTCAGGTATTGTTTTACGCCTAATCTCACGTACTGGTCGACCATCAGATACATTTCCTGAAGTTGATAATAATCGTACTGATTCCAAAGAAGAAACATCTTTCACAGTTATTGGTCATAAACATAATCCAACAA] [-] EMBL CD160999 [TTGCGCGCCAACATCAATTGTTCCCTTTGGGTTGCAGTATTTCTTTCTTCGCCGGATCGCTGAAAACAAAACGTCCGTCTTATAGAGCTTCTTCTGGGTTATGTTTGGACCACACCCACCAAAATCTTTGGGATACTGTATGAAACTCGCGCTACATGAGACCCTTCATAATATAAACCAAAATATATTTCTTACGACTAGACTGTCAAGAACCAGTTATGAGAATTTGGTTGAAGTGGTTTCTCAGTTAAATCAACTGTGTATCACTACGTTTGGAGAACAGTGTTCTATTGTAAAGTTCGCTCTAAAAAAATGCCAGGAAAACTTTTTGTGGAGATTATCAGCTAAAGTCTTCTGTAGAATTTCAAAGAAAAACCGTTCAGTATACAGAATTTTTGAGCTTATCGAATTTTTGCGGTTATATGATGAGATCATCCGCTTCAAGTCACTG ] [+] EMBL CD083833 [ c gaggTGGAGAACAGTGTTCTATTGTAAAG TCGCTCTAAAAAAATGCCAGGAAAACTTTTTCTGGAGATTATCAGCTAAAGTCTTCTGTAGAATTTCAAAGAAAAACCGTTCAGTATACAGAATTTTTGAGCTTATCGAATTTTTGCGGTTATATGATGAGATCATCCGCTTCAAGTCACTGATAGACTCTCAACCTGAGATGCCTGATTTTGCTAAAGAAATTTCTGATGATCCTTGTTGTATCTGTTTGGATAGAGAACCTGACACTGTTCTTGCTTGTATGCACTCATTCTGTCAACCATGTATTCACAAATGGGCCGGAATTAGTTACCAGTTGCCGTCAGCAAGTTCAGAATCGTCTGTTTCTGGTCAAGGATCCAGCAGCTGTAGACCTTCAGATACTAATCGCACACAATGCCCCATCTGTAGGTCTACGTACACAAATACCTCTACATCTTGGGAGTTGATTGGCACTCAGTCACCAAAAAAT ] [+] EMBL CD083441 [ gGTCTTCTGTAGAATTTCAAAGAAAAA CGTTCAGTATACAGAATTTTTGAGCTTATCGAATTTTTGCGGTTATATGATGAGATCATCCGCTTCAAGTCACTGATAGACTCTCAACCTGAGATGCCTGATTTTGCTAAAGAAATTTCTGATGATCCTTGTTGTATCTGTTTGGATAGAGAACCTGACACTGTTCTTGCTTGTATGCACTCATTCTGTCAACCATGTATTCACAAATGGGCCGGAATTAGTTACCAGTTGCCGTCAGCAAGTTCAGAATCGTCTGTTTCTGGTCAAGGATCCAGCAGCTGTAGACCTTCAGATACTAATCGCACACAATGCCCCATCTGTAGGTCTACGTACACAAATACCTCTACATCTTGGGAGTTGATTGGCACTCAGTCACCAAAAAATCATAGATATCAAATCTCAGGTATTGTTTTACGCCTAATCTCACGTACTGGTCGACCATCAGATACATTTCCTGAAGTT ] [-] EMBL CD115801 [ TCTTGCTTGTATGCACTCATTCTGTCAACCAGGTATTCACAAATGGGCCGGAATTAGTTACCAGTTGCCGTCAGCAAGTTCAGAATCGTCTGTTTCTGGTCAAGGATCCAGCAGCTGTAGACCTTCAGATACTAATCGCACACAATGCCCCATCTGTAGGTCTACGTACACAAATACCTCTACATCTTGGGAGTTGATTGGCACTCAGTCACCAAAAAATCATAGATATCAAATCTCAGGTATTGTTTTACGCCTAATCTCACGTACTGGTCGACCATCAGATACATTTCCTGAAGTTGATAATAATCGTACTGATTCCAAAGAAGAAACATCTTTCACAGTTATTGGTCATAAACATAATCCAACAA] consensusID : consensus_7752#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [TTGCGCGCCAACATCAATTGTTCCCTTTGGGTTGCAGTATTTCTTTCTTCGCCGGATCGCTGAAAACAAAACGTCCGTCTTATAGAGCTTCTTCTGGGTTATGTTTGGCCCACACCCACCAAAATCTTTGGGATACTGTATGAAACTCGCGCTACATGAGGCCCTTCATAATATAAACCTAAATATATTTCTTGGGATTAGCCTGTCAAGAACCAGTTATGAGAATTGGGTCGAAGTGGTTTCTCAGTTAAATCCCCTGTGTATCTATACGTGTGGAGAACAGTGCTGTATTGTAAAGTTCGCTCTCAAAAAATGCCAGGAAAACTTTTTCTGAAGATTATCAGATATAGTATTCTGTACAATTTCAAATAAAAACCGTTCAGTATGCAGAATTTTTGAGCTCATCGGATTTAGGCGGTTATATGATGAGATCATCCGCTTCAAGTCAATG] [-] EMBL CD161088 [TTGCGCGCCAACATCAATTGTTCCCTTTGGGTTGCAGTATTTCTTTCTTCGCCGGATCGCTGAAAACAAAACGTCCGTCTTATAGAGCTTCTTCTGGGTTATGTTTGGCCCACACCCACCAAAATCTTTGGGATACTGTATGAAACTCGCGCTACATGAGGCCCTTCATAATATAAACCTAAATATATTTCTTGGGATTAGCCTGTCAAGAACCAGTTATGAGAATTGGGTCGAAGTGGTTTCTCAGTTAAATCCCCTGTGTATCTATACGTGTGGAGAACAGTGCTGTATTGTAAAGTTCGCTCTCAAAAAATGCCAGGAAAACTTTTTCTGAAGATTATCAGATATAGTATTCTGTACAATTTCAAATAAAAACCGTTCAGTATGCAGAATTTTTGAGCTCATCGGATTTAGGCGGTTATATGATGAGATCATCCGCTTCAAGTCAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7752#0 TTGCGCGCCAACATCAATTGTTCCCTTTGGGTTGCAGTATTTCTTTCTTCGCCGGATCGC 60 consensus_7752#1 TTGCGCGCCAACATCAATTGTTCCCTTTGGGTTGCAGTATTTCTTTCTTCGCCGGATCGC 60 ************************************************************ consensus_7752#0 TGAAAACAAAACGTCCGTCTTATAGAGCTTCTTCTGGGTTATGTTTGGACCACACCCACC 120 consensus_7752#1 TGAAAACAAAACGTCCGTCTTATAGAGCTTCTTCTGGGTTATGTTTGGCCCACACCCACC 120 ************************************************ *********** consensus_7752#0 AAAATCTTTGGGATACTGTATGAAACTCGCGCTACATGAGACCCTTCATAATATAAACCA 180 consensus_7752#1 AAAATCTTTGGGATACTGTATGAAACTCGCGCTACATGAGGCCCTTCATAATATAAACCT 180 **************************************** ****************** consensus_7752#0 AAATATATTTCTTACGACTAGACTGTCAAGAACCAGTTATGAGAATTTGGTTGAAGTGGT 240 consensus_7752#1 AAATATATTTCTTGGGATTAGCCTGTCAAGAACCAGTTATGAGAATTGGGTCGAAGTGGT 240 ************* ** *** ************************* *** ******** consensus_7752#0 TTCTCAGTTAAATCAACTGTGTATC-ACTCGTTTGGAGAACAGTGTTCTATTGTAAAGT- 298 consensus_7752#1 TTCTCAGTTAAATCCCCTGTGTATCTATACGTGTGGAGAACAGTGCTGTATTGTAAAGTT 300 ************** ********* * *** ************ * *********** consensus_7752#0 CGCTCTAAAAAAATGCCAGGAAAACTTTTTGTGGAGATTATCAGCTAAAGTCTTCTGTAG 358 consensus_7752#1 CGCTCTCAAAAAATGCCAGGAAAACTTTTTCTGAAGATTATCAGATATAGTATTCTGTAC 360 ****** *********************** ** ********** ** *** ******* consensus_7752#0 AATTTCAAAGAAAAACCGTTCAGTATACAGAATTTTTGAGCTTATCGAATTTTTGCGGTT 418 consensus_7752#1 AATTTCAAATAAAAACCGTTCAGTATGCAGAATTTTTGAGCTCATCGGATTTAGGCGGTT 420 ********* **************** *************** **** **** ****** consensus_7752#0 ATATGATGAGATCATCCGCTTCAAGTCACTGATAGACTCTCAACCTGAGATGCCTGATTT 478 consensus_7752#1 ATATGATGAGATCATCCGCTTCAAGTCAATG----------------------------- 451 **************************** ** consensus_7752#0 TGCTAAAGAAATTTCTGATGATCCTTGTTGTATCTGTTTGGATAGAGAACCTGACACTGT 538 consensus_7752#1 ------------------------------------------------------------ consensus_7752#0 TCTTGCTTGTATGCACTCATTCTGTCAACCATGTATTCACAAATGGGCCGGAATTAGTTA 598 consensus_7752#1 ------------------------------------------------------------ consensus_7752#0 CCAGTTGCCGTCAGCAAGTTCAGAATCGTCTGTTTCTGGTCAAGGATCCAGCAGCTGTAG 658 consensus_7752#1 ------------------------------------------------------------ consensus_7752#0 ACCTTCAGATACTAATCGCACACAATGCCCCATCTGTAGGTCTACGTACACAAATACCTC 718 consensus_7752#1 ------------------------------------------------------------ consensus_7752#0 TACATCTTGGGAGTTGATTGGCACTCAGTCACCAAAAAATCATAGATATCAAATCTCAGG 778 consensus_7752#1 ------------------------------------------------------------ consensus_7752#0 TATTGTTTTACGCCTAATCTCACGTACTGGTCGACCATCAGATACATTTCCTGAAGTTGA 838 consensus_7752#1 ------------------------------------------------------------ consensus_7752#0 TAATAATCGTACTGATTCCAAAGAAGAAACATCTTTCACAGTTATTGGTCATAAACATAA 898 consensus_7752#1 ------------------------------------------------------------ consensus_7752#0 TCCAACAA 906 consensus_7752#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||