|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7777#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 898 fasta sequence
[ATCAGTTTTATTATAATGCGAAGAAGAGAAATAAATTACAAGATATTGCTAAAATACAATGAATACATTTTGTCCATAGTCACAAACGTTTGTTTTTCTGGTATTCTATGCGAGAAACTTTATGTTCATTATTGACTAGAGTGTACACATATAACTGTATCGCAGTTTCTTGAATATCCAAAAGAACAAATGAAGGTTGCGGGTTTCTATTAAAAAAGGACCGAAAAGGGAAATATACGCATCTGATTCGTTAATGCTGAACAACAAAGCATGTATCAATCCAGGTTGT-TTAGATCATACGCTATTTATCTACTGATTATTCATATTCATTAATAAATACTGAATTCCAACGCAAATGTGCGAATTTCAGTCGTTATTGAACAAAGTAAAGAAGTAGTACTTACTTTTCAAAAGGGCTATATGCACCGGTAGCAGAACCAGGATTGATATAAAAATGTTCAGCATATTCATAGGCTTCAAACTTATGAGTATGACCACTGATCAATATATCAACATCTAATTCCCTTTGAAGAGCAGCTAAACTTTTTTGGTCTCCCC-AGGGACTATTTGATGTCCATGTATAAGTCCTATCTTAAAGTTTCCAACGCTTAAAACCTTTGTAAGAGGGAAATCTAAAGCCTCATCAAAGTCGCCTTTCACAACATGCACATCTCCACAAATAAGTTTTAAGTAGTCATACATATATTTCGAAGTAAGGTTTCCTGTGCATAATATATGCTGTATTTTTCCAGGAGCTAAAAGAGTCTTAAAAGCAGGATGTAAAGAACGTTTCCTATCAGGAATGTGGAAATCACCGATCACTAGGACCAACATATGAAACCCAGAGATTTGGAATGAGGCACCACTGCAAAATACAGACGTTCACGACAAATTTGCG]
[+] EMBL CD076102 [ATCAGTTTTATTATAATGCGAAGAAGAGAAATAAATTACAAGATATTGCTAAAATACAATGAATACATTTTGTCCATAGTCACAAACGTTTGTTTTTCTGGTATTCTATGCGAGAAACTTTATGTTCATTATTGACTAGAGTGTACACATATAACTGTATCGCAGTTTCTTGAATATCCAAAAGAACAAATGAAGGTTGCGGGTTTCTATTAAAAAAGGACCGAAAAGGGAAATATACGCATCTGATTCGTTAATGCTGAACAACAAAGCATGTATCAATCCAGGTTGT TTAGATCATACGCTATTTATCTACTGATTATTCATATTCATTAATAAATACTGAATTCCAACGCAAATGTGCGAATTTCAGTCGTTATTGAACAAAGTAAAGAAGTAGTACTTACTTTTCAAAAGGGCTATATGCACCGGTAGCAGAACCAGGATTGATATAAAAATGTTCAGCATATTCATAGGCTTCAAACTTATGAGTATGACCACTGATCAATATATCAACATCTAATTCCCTTTGAAGAGCAGCTAAACTTTTTTGGTCTCCCC AGGGACTATTTGAT ]
[-] EMBL CD082506 [ ATGCTGANCAACAAAGCATGTATCAATNCAGG TGTNTTAGATCATACGCTATTTATCTACTGATTATTCATATTCATTAATAAATACTGAATTCCAACGCAAATGTGCGAATTTCAGTCGTTATTGAACAAAGTAAAGAAGTAGTACTTACTTTTCAAAAGGGCTATATGCACCGGTAGCAGAACCAGGATTGATATAAAAATGTTCAGCATATTCATAGGCTTCAAACTTATGAGTATGACCACTGATCAATATATCAACATCTAATTCCCTTTGAAGAGCAGCTAAACTTTTTTGGTCTCCCCAAGGAACTATTTGATGTCCATGTATAAGTCCTATCTTAAAGTTTCCAACGCTTAAAACCTTTGTAAGAGGGAAATCTAAAGCCTCATCAAAGTCGCCTTTCACAACATGCACATCTCCACAAATAAGTTTTAAGTAGTCATACATATATTTCGAAGTAAGGTTTCCTGTGCATAATATATGCTGTATTTTTCCAGGAGCTAAAAGAGTCTTAAAAGCAGGATGTAAAGAACGTTTCCTATCAGGAATGTGGAAATCACCGATCACTAGGACCAACATATGAAACCCAGAGATTTGGAATGAGGCACCACTGCAAAATACAGACGTTCACGACAAATTTGCG]
consensusID : consensus_7777#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 826 fasta sequence
[ATCAGTTTTATTATAATGCGAAGAAGAGAAATAAATTACAAGATATTGCTA-AAATACAATGAATACATTTTGTCCATAGTCACAAACGTTTGTTT-TTCTGGTATTCTATGCGAGAAACTTTATGTTCATTATTGACTAGAGTGTACACATATAACTGTATCGCAGTTTCTTGAATATCCAAAAGAACAAATGAAGGTTGCGGGTTTTTTTCAAAAGGGCTATATGCACCGGTAGCAGAACCAGGATTGATATAAAAATGTTCAGCATATTCATAGGCTTCAAACTTATGAGTATGACCACTGATCAATATATCAACATCTAATTCCCTTTGAAGAGCAGCTAAACTTTTTTGGTCTCCCCAAGGAACTATTTGATGTCCATGTATAAGTCCTATCTTAAAGTTTCCAACGCTTAAAAACTTTGTAAGAGGGAAATCTAAAGCCTCATCAAAGTCGCCTTTCACAACATGCACATCTCCACAAATAAGTTTTAAGTAGTCATACATATATTTCGAAGTAAGGTTTCCTGTGCATAATATATGCTGTATTTTTCCAGGAGCTAAAAGAGTCTTAAAAGCAGGATGTAAAGAACGTTTCCTATCAGGAATGTGGAAATCACCGATCACTAGGACCAACTGAAGTGATAAACCAGCAACAAAATCCTTACCATATGAAACCCAGAGATTTGGAATGAGGCACCACTGCAAAATACAGACGTTCACGACAAATTTGCGTAATCTATAATATAAGAGCTTTTTGAACTTATCATAATATGAGATCATAATGGCAAATATGAGGTTATACGTGAGTGCCTCGTGCCGAATNTG]
[+] EMBL CD075282 [ATCAGTTTTATTATAATGCGAAGAAGAGAAATAAATTACAAGATATTGCTA AAATACAATGAATACATTTTGTCCATAGTCACAAACGTTTGTTT TTCTGGTATTCTATGCGAGAAACTTTATGTTCATTATTGACTAGAGTGTACACATATAACTGTATCGCAGTTTCTTGAATATCCAAAAGAACAAATGAAGGTTGCGGGTTTTTTTCAAAAGGGCTATATGCACCGGTAGCAGAACCAGGATTGATATAAAAATGTTCAGCATATTCATAGGCTTCAAACTTATGAGTATGACCACTGATCAATATATCAACATCTAATTCCCTTTGAAGAGCAGCTAAACTTTTTTGGTCTCCCCAAGGAACTATTTGATGTCCATGTATAAGTCCTATCTTAAAGTTTCCAACGCTTAAAAACTTTGTAAGAGGGAAATCTAAAGCCTCATCAAAGTCGCCTTTCACAACATGCACATCTCCACAAATAAGTTTTAAGTAGTCATACATATATTTCGAAGTAAGGTTTCCTGTGCATAATATATGCTGTATTTTTCCAGGA ]
[-] EMBL CD081457 [ agTTTA TATAATGC AAGAAGAGAAAT AATTNC AGATA TGCTANNAATNCAATGAATACA TNTGTCCATAGTCACAAACG TTGTTTNTTCTGGTATTCTATGCGAG AACTTTATGTTCATATTTGACTAGAGTGTACACATATAACTGTATCGCAGTTTCTTGAATATCCAAAAGAACAAATGAAGGTGNCGGG TTTTTTCAAAAGGGCTATATGCACCGGTAGCAGAACCAGGATTGATATAAAAATGTTCAGCATATTCATAGGCTTCAAACTTATGAGTATGACCACTGATCAATATATCAACATCTAATTCCCTTTGAAGAGCAGCTAAACTTTTTTGGTCTCCCCAAGGAACTATTTGATGTCCATGTATAAGTCCTATCTTAAAGTTTCCAACGCTTAAAAACTTTGTAAGAGGGAAATCTAAAGCCTCATCAAAGTCGCCTTTCACAACATGCACATCTCCACAAATAAGTTTTAAGTAGTCATACATATATTTCGAAGTAAGGTTTCCTGTGCATAATATATGCTGTATTTTTCCAGGAGCTAAAAGAGTCTTAAAAGCAGGATGTAAAGAACGTTTCCTATCAGGAATGTGGAAATCACCGATCACTAGGACCAACTGAAGTGATAAACCAGCAACAAAATCCTTACCATATGAAACCCAGAGATTTGGAATGAGGCACCACTGCAAAATACAGACGTTCACGACAAATTTGCGTAATCTATAATATAAGAGCTTTTTGAACTTATCATAATATGAGATCATAATGGCAAATATGAGGTTATACGTGAGTGCCTCGTGCCGAATNTG]
consensusID : consensus_7777#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence
[GTTTCTTGAATATCCAAAAGAACAAATGAAGGTTGCGGGTTTTTTTCAAAAGGGCTATATGCACCGGTAGCAGAACCAGGATTGATATAAAAATGTTCAGCATATTCATAGGCTTCAAACTTATGAGTATGACCACTGATCAATATATCAACATCTAATTCCCTTTGAAGAGCAGCTAAACTTTTTTGGTCTCCCCAAGGAACTATTTGATGTCCATGTATAAGTCCTATCTTAAAGTTTCCAACGCTTAAAACCTTTGTAAGAGGGAAATCTAAAGCCTCATCAAAGTCGCCTTTCACAACATGCACATCTCCACAAATAAGTTTTAAGTAGTCATACATATATTTCGAAGTAAGGTTTCCTGTGCATAATATATGCTGTATTTTTCCAGGAGCTAAAAGAGTCTTAAAAGCAGGATGTAAAGAACGTTTCCTATCAGGAATGTGGAAATCACCGATCACTAGGACCAACATATGAAACCCAGAGATTTGGAATGAGGCACCACTGCAAAATACAGACGTTCACGACAAATTTGCGTAATCCCTCGTGCCGATTCNTGGCCT]
[-] EMBL CD084210 [GTTTCTTGAATATCCAAAAGAACAAATGAAGGTTGCGGGTTTTTTTCAAAAGGGCTATATGCACCGGTAGCAGAACCAGGATTGATATAAAAATGTTCAGCATATTCATAGGCTTCAAACTTATGAGTATGACCACTGATCAATATATCAACATCTAATTCCCTTTGAAGAGCAGCTAAACTTTTTTGGTCTCCCCAAGGAACTATTTGATGTCCATGTATAAGTCCTATCTTAAAGTTTCCAACGCTTAAAACCTTTGTAAGAGGGAAATCTAAAGCCTCATCAAAGTCGCCTTTCACAACATGCACATCTCCACAAATAAGTTTTAAGTAGTCATACATATATTTCGAAGTAAGGTTTCCTGTGCATAATATATGCTGTATTTTTCCAGGAGCTAAAAGAGTCTTAAAAGCAGGATGTAAAGAACGTTTCCTATCAGGAATGTGGAAATCACCGATCACTAGGACCAACATATGAAACCCAGAGATTTGGAATGAGGCACCACTGCAAAATACAGACGTTCACGACAAATTTGCGTAATCCCTCGTGCCGATTCNTGGCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7777#1 ATCAGTTTTATTATAATGCGAAGAAGAGAAATAAATTACAAGATATTGCTAAAATACAAT 60
consensus_7777#2 ------------------------------------------------------------
consensus_7777#0 ATCAGTTTTATTATAATGCGAAGAAGAGAAATAAATTACAAGATATTGCTAAAATACAAT 60
consensus_7777#1 GAATACATTTTGTCCATAGTCACAAACGTTTGTTTTTCTGGTATTCTATGCGAGAAACTT 120
consensus_7777#2 ------------------------------------------------------------
consensus_7777#0 GAATACATTTTGTCCATAGTCACAAACGTTTGTTTTTCTGGTATTCTATGCGAGAAACTT 120
consensus_7777#1 TATGTTCATTATTGACTAGAGTGTACACATATAACTGTATCGCAGTTTCTTGAATATCCA 180
consensus_7777#2 --------------------------------------------GTTTCTTGAATATCCA 16
consensus_7777#0 TATGTTCATTATTGACTAGAGTGTACACATATAACTGTATCGCAGTTTCTTGAATATCCA 180
****************
consensus_7777#1 AAAGAACAAATGAAGGTTGCGGGTTT---------------------------------- 206
consensus_7777#2 AAAGAACAAATGAAGGTTGCGGGTTT---------------------------------- 42
consensus_7777#0 AAAGAACAAATGAAGGTTGCGGGTTTCTATTAAAAAAGGACCGAAAAGGGAAATATACGC 240
**************************
consensus_7777#1 ------------------------------------------------------------
consensus_7777#2 ------------------------------------------------------------
consensus_7777#0 ATCTGATTCGTTAATGCTGAACAACAAAGCATGTATCAATCCAGGTTGTTTAGATCATAC 300
consensus_7777#1 ------------------------------------------------------------
consensus_7777#2 ------------------------------------------------------------
consensus_7777#0 GCTATTTATCTACTGATTATTCATATTCATTAATAAATACTGAATTCCAACGCAAATGTG 360
consensus_7777#1 --------------------------------------------TTTTCAAAAGGGCTAT 222
consensus_7777#2 --------------------------------------------TTTTCAAAAGGGCTAT 58
consensus_7777#0 CGAATTTCAGTCGTTATTGAACAAAGTAAAGAAGTAGTACTTACTTTTCAAAAGGGCTAT 420
****************
consensus_7777#1 ATGCACCGGTAGCAGAACCAGGATTGATATAAAAATGTTCAGCATATTCATAGGCTTCAA 282
consensus_7777#2 ATGCACCGGTAGCAGAACCAGGATTGATATAAAAATGTTCAGCATATTCATAGGCTTCAA 118
consensus_7777#0 ATGCACCGGTAGCAGAACCAGGATTGATATAAAAATGTTCAGCATATTCATAGGCTTCAA 480
************************************************************
consensus_7777#1 ACTTATGAGTATGACCACTGATCAATATATCAACATCTAATTCCCTTTGAAGAGCAGCTA 342
consensus_7777#2 ACTTATGAGTATGACCACTGATCAATATATCAACATCTAATTCCCTTTGAAGAGCAGCTA 178
consensus_7777#0 ACTTATGAGTATGACCACTGATCAATATATCAACATCTAATTCCCTTTGAAGAGCAGCTA 540
************************************************************
consensus_7777#1 AACTTTTTTGGTCTCCCCAAGGAACTATTTGATGTCCATGTATAAGTCCTATCTTAAAGT 402
consensus_7777#2 AACTTTTTTGGTCTCCCCAAGGAACTATTTGATGTCCATGTATAAGTCCTATCTTAAAGT 238
consensus_7777#0 AACTTTTTTGGTCTCCCCAGGGA-CTATTTGATGTCCATGTATAAGTCCTATCTTAAAGT 599
******************* *** ************************************
consensus_7777#1 TTCCAACGCTTAAAAACTTTGTAAGAGGGAAATCTAAAGCCTCATCAAAGTCGCCTTTCA 462
consensus_7777#2 TTCCAACGCTTAAAACCTTTGTAAGAGGGAAATCTAAAGCCTCATCAAAGTCGCCTTTCA 298
consensus_7777#0 TTCCAACGCTTAAAACCTTTGTAAGAGGGAAATCTAAAGCCTCATCAAAGTCGCCTTTCA 659
*************** ********************************************
consensus_7777#1 CAACATGCACATCTCCACAAATAAGTTTTAAGTAGTCATACATATATTTCGAAGTAAGGT 522
consensus_7777#2 CAACATGCACATCTCCACAAATAAGTTTTAAGTAGTCATACATATATTTCGAAGTAAGGT 358
consensus_7777#0 CAACATGCACATCTCCACAAATAAGTTTTAAGTAGTCATACATATATTTCGAAGTAAGGT 719
************************************************************
consensus_7777#1 TTCCTGTGCATAATATATGCTGTATTTTTCCAGGAGCTAAAAGAGTCTTAAAAGCAGGAT 582
consensus_7777#2 TTCCTGTGCATAATATATGCTGTATTTTTCCAGGAGCTAAAAGAGTCTTAAAAGCAGGAT 418
consensus_7777#0 TTCCTGTGCATAATATATGCTGTATTTTTCCAGGAGCTAAAAGAGTCTTAAAAGCAGGAT 779
************************************************************
consensus_7777#1 GTAAAGAACGTTTCCTATCAGGAATGTGGAAATCACCGATCACTAGGACCAACTGAAGTG 642
consensus_7777#2 GTAAAGAACGTTTCCTATCAGGAATGTGGAAATCACCGATCACTAGGACCAAC------- 471
consensus_7777#0 GTAAAGAACGTTTCCTATCAGGAATGTGGAAATCACCGATCACTAGGACCAAC------- 832
*****************************************************
consensus_7777#1 ATAAACCAGCAACAAAATCCTTACCATATGAAACCCAGAGATTTGGAATGAGGCACCACT 702
consensus_7777#2 -------------------------ATATGAAACCCAGAGATTTGGAATGAGGCACCACT 506
consensus_7777#0 -------------------------ATATGAAACCCAGAGATTTGGAATGAGGCACCACT 867
***********************************
consensus_7777#1 GCAAAATACAGACGTTCACGACAAATTTGCGTAATCTATAATATAAGAGCTTTTTGAACT 762
consensus_7777#2 GCAAAATACAGACGTTCACGACAAATTTGCGTAATCCCTCGTGCCGA---TTCNTGGCCT 563
consensus_7777#0 GCAAAATACAGACGTTCACGACAAATTTGCG----------------------------- 898
*******************************
consensus_7777#1 TATCATAATATGAGATCATAATGGCAAATATGAGGTTATACGTGAGTGCCTCGTGCCGAA 822
consensus_7777#2 ------------------------------------------------------------
consensus_7777#0 ------------------------------------------------------------
consensus_7777#1 TNTG 826
consensus_7777#2 ----
consensus_7777#0 ----
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||