cluster # 7778

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7778 cluster # 7778 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7778#0 length = 836 sequences # 4

consensus_7778#1 length = 377 sequences # 1

consensusID : consensus_7778#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 836
fasta sequence

                              [GCTACTGTATCATATGATGTCTACTTAAATCTGACAAAATATTTAAAAAAAGAAGATCAATATGTTGTATGGGAAACAACTCGTCGAGCACTTTCTTATATAGATCGTATGCTTGCCATGGATGAAAGTTATGGAGCTTTTCAAGCATATTTACGTACGCTTGTAGATGATCCTCTTAAATCAGTCGACTGGACAACAATGAAAGAAGACAAAGATCATATGAAACATATGTTGCGCCTGACATTAACTCGTCTAGCATGTCAAGCTGAACATCATTCATGCGTGAAAATGGCTACAGAATATTACAGAAATTGGATGCTTAATCCTGAAAAGAATTTGATCCCACCCAGTTTGAGACCAGCCGTTTACTGCACTGCAATTAGA-ATCGGTGGACAAAAAGAATGGGAGTTCCTAAAACAACGTTTATTAGATGTGGATATCAAAGAGGATGAAAAAAACAGTATTTTACAGGCATTGTCTTGTTCTCGTGATATGTGGGTAGTAAGACTACATTTAGAATGGATCATAAAAAATAATCAAAAAGATCCTCAAGATTTATTGGATGCACTTTCATCTGTTGCACTGTATCCTATCGGTCAGACACTTTTATGGGAACATATTCGTGAAGCATGGAGATTTATAATGAATGAAGGAAAAAATGCAACTCATCCAACTGCGAAGGCGTGTGTACTAACTGTAATTCTTAAAATACTATCCAAACGTCATTACACACTAAATAACATACCGGATCAAGAAGAAGTACTTGCTATGCANAATTCTGGACAAAAACTACTTGAAAACCATGTTCTTAAACGTGGATTANACGATTTATTTAN]

[-] EMBL CD159777             [GCTACTGTATCATATGATGTCTACTTAAATCTGACAAAATATTTAAAAAAAGAAGATCAATATGTTGTATGGGAAACAACTCGTCGAGCACTTTCTTATATAGATCGTATGCTTGCCATGGATGAAAGTTATGGAGCTTTTCAAGCATATTTACGTACGCTTGTAGATGATCCTCTTAAATCAGTCGACTGGACAACAATGAAAGAAGACAAAGATCATATGAAACATATGTTGCGCCTGACATTAACTCGTCAAGCATGTCAAGCTGAACATCATTCATGCGTGAAAATGGCTACAGAATATTACAGAAATTGGATGCTTAATCCTGAAAAGAATTTGATCCCACCCAGTTTGAGGCCAGCCGTTTACTGCACTGCAATTAGACATCGGTGGACTAAAAGAATGGGAGTTCCTAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD201295             [                                                                  GTATGGGAAACAACTCGTCGAGCACTTTCTTATATAGATCGTATGCTTGCCATGGATGAAAGTTATGGAGCTCTTCAAGCATATTTACGTACGCTTGTAGATGATCCTCTTAAATCAGTCGACTGGACAACAATGAAAGAAGACAAAGATCATATGAAACATATGTTGCGCCTGACATTAACTCGTCTAGCATGTCAAGCTGAACATCATTCATGCGTGAAAATGGCTACAGAATATTACAGAAATTGGATGCTTAATCCTGAAAAGAATTTGATCCCACCCAGTTTGAGACCAGCCGTTTACTGCACTGCAATTAGA ATCGGTGGACAAAAAGAATGGGAGTTCCTAAA                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD078262             [                                                                                                                                                                                                                                      GTTGCGCCTGACATTAACTCGTCTAGCATGTCAAGCTGAACATCATTCATGCGTGAAAATGGCTACAGAATATTACAGAAATTGGATGCTTAATCCTGAAAAGAATTTGATCCCACCCAGTTTGAGACCAGCCGTTTACTGCACTGCAATTAGA ATCGGTGGACAAAAAGAATGGGAGTTCCTAAAACAACGTTTATTAGATGTGGATATCAAAGAGGATGAAAAAAACAGTATTTTACAGGCATTGTCTTGTTCTCGTGATATGTGGGTAGTAAGACTACATTTAGAATGGATCATAAAAAATAATCAAAAAGATCCTCAAGATTTATTGGATGCACTTTCATCTGTTGCACTGTATCCTATCGGTCAGACACTTTTATGGGAACATATTCGTGAAGCATGGAGATTTATAATGAATGAAGGAAAAAATGCAACTCATCCAACTGCGAAGGCGTGTGTACTAACTGTAATTCTTAAAATACTATCCAAACGTCATTACACACTAAATAACATACCGGATCAAGAAGAAGTACTTGCTATGCANAATTCTGGACAAAAACTACTTGAAAACCATGTTCTTAAACGTGGATTANACGATTTATTTAN]
[+] EMBL CD078344             [                                                                                                                                                                                                                                      GTTGCGCCTGACATTAACTCGTCTAGCATGTCAAGCTGAACATCATTCATGCGTGAAAATGGCTACAGAATATTACAGAAATTGGATGCTTAATCCTGAAAAGAATTTGATCCCACCCAGTTTGAGACCAGCCGTTTACTGCACTGCAATTAGA ATCGGTGGACAAAAAGAATGGGAGTTCCTAAAACAACGTTTATTAGATGTGGATATCAAAGAGGATGAAAAAAACAGTATTTTACAGGCATTGTCTTGTTCTCGTGATATGTGGGTAGTAAGACTACATTTAGAATGGATCATAAAAAATAATCAAAAAGATCCTCAAGATTTATTGGATGCACTTTCATCTGTTGCACTGTATCCTATCGGTCAGACACTTTTATGGGAACATATTCGTGAAGCATGGAGATTTATAATGAATGAAGGAAAAAATGCAACTCATCCAACTGCGAAGGCGTGTGTACTAACTGTAATTCTTAAAATACTATCCAAACGTCATTACACACTAAATAACATACCGGATCAAGAAGAAGTACTTGCTATGCAAAATTCTGGAC AAAACTACTTGAAAACCATGTTCTTAAACGTGGATTAAACGATTTAT    ]




>consensus_7778#0
GCTACTGTATCATATGATGTCTACTTAAATCTGACAAAATATTTAAAAAAAGAAGATCAA
TATGTTGTATGGGAAACAACTCGTCGAGCACTTTCTTATATAGATCGTATGCTTGCCATG
GATGAAAGTTATGGAGCTTTTCAAGCATATTTACGTACGCTTGTAGATGATCCTCTTAAA
TCAGTCGACTGGACAACAATGAAAGAAGACAAAGATCATATGAAACATATGTTGCGCCTG
ACATTAACTCGTCTAGCATGTCAAGCTGAACATCATTCATGCGTGAAAATGGCTACAGAA
TATTACAGAAATTGGATGCTTAATCCTGAAAAGAATTTGATCCCACCCAGTTTGAGACCA
GCCGTTTACTGCACTGCAATTAGAATCGGTGGACAAAAAGAATGGGAGTTCCTAAAACAA
CGTTTATTAGATGTGGATATCAAAGAGGATGAAAAAAACAGTATTTTACAGGCATTGTCT
TGTTCTCGTGATATGTGGGTAGTAAGACTACATTTAGAATGGATCATAAAAAATAATCAA
AAAGATCCTCAAGATTTATTGGATGCACTTTCATCTGTTGCACTGTATCCTATCGGTCAG
ACACTTTTATGGGAACATATTCGTGAAGCATGGAGATTTATAATGAATGAAGGAAAAAAT
GCAACTCATCCAACTGCGAAGGCGTGTGTACTAACTGTAATTCTTAAAATACTATCCAAA
CGTCATTACACACTAAATAACATACCGGATCAAGAAGAAGTACTTGCTATGCANAATTCT
GGACAAAAACTACTTGAAAACCATGTTCTTAAACGTGGATTANACGATTTATTTAN

consensusID : consensus_7778#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence

                              [AGATTTATTGGATGCACTTTCATCTGTTGCACTGTATCCTATCGGTCAGACACTTTTATGGGAACATATTCGTGAAGCATGGAGATTTATAATGAATGAAGGAAAAAATGCAACTCATCCAACTGCAAAAGCCGCTTCATCTGATGATCTCAATGACATTTGCAAATATCAAATCGCAAATTCTGGGCGTAATAATGAGTGTGTACTAACTGTAATTCTTAAAATACTATCCCAACGTCATTACACACTAAATAACATACCGGATCAAGAAGAAGTACTTGCTATGNAAAATTCTGGACAAAAACTACTTGAAACCATGTTCTTAACGTGGATTAAACGATTTATTTAAAGATCAAAGAAATATAAATTGGACAACA]

[+] EMBL AW063017             [AGATTTATTGGATGCACTTTCATCTGTTGCACTGTATCCTATCGGTCAGACACTTTTATGGGAACATATTCGTGAAGCATGGAGATTTATAATGAATGAAGGAAAAAATGCAACTCATCCAACTGCAAAAGCCGCTTCATCTGATGATCTCAATGACATTTGCAAATATCAAATCGCAAATTCTGGGCGTAATAATGAGTGTGTACTAACTGTAATTCTTAAAATACTATCCCAACGTCATTACACACTAAATAACATACCGGATCAAGAAGAAGTACTTGCTATGNAAAATTCTGGACAAAAACTACTTGAAACCATGTTCTTAACGTGGATTAAACGATTTATTTAAAGATCAAAGAAATATAAATTGGACAACA]




>consensus_7778#1
AGATTTATTGGATGCACTTTCATCTGTTGCACTGTATCCTATCGGTCAGACACTTTTATG
GGAACATATTCGTGAAGCATGGAGATTTATAATGAATGAAGGAAAAAATGCAACTCATCC
AACTGCAAAAGCCGCTTCATCTGATGATCTCAATGACATTTGCAAATATCAAATCGCAAA
TTCTGGGCGTAATAATGAGTGTGTACTAACTGTAATTCTTAAAATACTATCCCAACGTCA
TTACACACTAAATAACATACCGGATCAAGAAGAAGTACTTGCTATGNAAAATTCTGGACA
AAAACTACTTGAAACCATGTTCTTAACGTGGATTAAACGATTTATTTAAAGATCAAAGAA
ATATAAATTGGACAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7778#0      GCTACTGTATCATATGATGTCTACTTAAATCTGACAAAATATTTAAAAAAAGAAGATCAA 60
consensus_7778#1      ------------------------------------------------------------
                                                                                  

consensus_7778#0      TATGTTGTATGGGAAACAACTCGTCGAGCACTTTCTTATATAGATCGTATGCTTGCCATG 120
consensus_7778#1      ------------------------------------------------------------
                                                                                  

consensus_7778#0      GATGAAAGTTATGGAGCTTTTCAAGCATATTTACGTACGCTTGTAGATGATCCTCTTAAA 180
consensus_7778#1      ------------------------------------------------------------
                                                                                  

consensus_7778#0      TCAGTCGACTGGACAACAATGAAAGAAGACAAAGATCATATGAAACATATGTTGCGCCTG 240
consensus_7778#1      ------------------------------------------------------------
                                                                                  

consensus_7778#0      ACATTAACTCGTCTAGCATGTCAAGCTGAACATCATTCATGCGTGAAAATGGCTACAGAA 300
consensus_7778#1      ------------------------------------------------------------
                                                                                  

consensus_7778#0      TATTACAGAAATTGGATGCTTAATCCTGAAAAGAATTTGATCCCACCCAGTTTGAGACCA 360
consensus_7778#1      ------------------------------------------------------------
                                                                                  

consensus_7778#0      GCCGTTTACTGCACTGCAATTAGAATCGGTGGACAAAAAGAATGGGAGTTCCTAAAACAA 420
consensus_7778#1      ------------------------------------------------------------
                                                                                  

consensus_7778#0      CGTTTATTAGATGTGGATATCAAAGAGGATGAAAAAAACAGTATTTTACAGGCATTGTCT 480
consensus_7778#1      ------------------------------------------------------------
                                                                                  

consensus_7778#0      TGTTCTCGTGATATGTGGGTAGTAAGACTACATTTAGAATGGATCATAAAAAATAATCAA 540
consensus_7778#1      ------------------------------------------------------------
                                                                                  

consensus_7778#0      AAAGATCCTCAAGATTTATTGGATGCACTTTCATCTGTTGCACTGTATCCTATCGGTCAG 600
consensus_7778#1      -----------AGATTTATTGGATGCACTTTCATCTGTTGCACTGTATCCTATCGGTCAG 49
                                 *************************************************

consensus_7778#0      ACACTTTTATGGGAACATATTCGTGAAGCATGGAGATTTATAATGAATGAAGGAAAAAAT 660
consensus_7778#1      ACACTTTTATGGGAACATATTCGTGAAGCATGGAGATTTATAATGAATGAAGGAAAAAAT 109
                      ************************************************************

consensus_7778#0      GCAACTCATCCAACTGCGAAGGC------------------------------------- 683
consensus_7778#1      GCAACTCATCCAACTGCAAAAGCCGCTTCATCTGATGATCTCAATGACATTTGCAAATAT 169
                      ***************** ** **                                     

consensus_7778#0      -----------------------------GTGTGTACTAACTGTAATTCTTAAAATACTA 714
consensus_7778#1      CAAATCGCAAATTCTGGGCGTAATAATGAGTGTGTACTAACTGTAATTCTTAAAATACTA 229
                                                   *******************************

consensus_7778#0      TCCAAACGTCATTACACACTAAATAACATACCGGATCAAGAAGAAGTACTTGCTATGCAN 774
consensus_7778#1      TCCCAACGTCATTACACACTAAATAACATACCGGATCAAGAAGAAGTACTTGCTATGNAA 289
                      *** ***************************************************** * 

consensus_7778#0      AATTCTGGACAAAAACTACTTGAAAACCATGTTCTTAAACGTGGATTANACGATTTATTT 834
consensus_7778#1      AATTCTGGACAAAAACTACTTGAAA-CCATGTTCTTAA-CGTGGATTAAACGATTTATTT 347
                      ************************* ************ ********* ***********

consensus_7778#0      AN---------------------------- 836
consensus_7778#1      AAAGATCAAAGAAATATAAATTGGACAACA 377
                      *