cluster # 7781

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Schistosoma mansoni
cluster # 7781 cluster # 7781 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7781#0 length = 719 sequences # 4

consensus_7781#1 length = 423 sequences # 1

consensusID : consensus_7781#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 719
fasta sequence

                              [GTTTATTAGTACCAGTAGCTCAATGTGGTTCAATAATTGGTAAGGGAGGATCTAAGATTAAAGATGTTCGTGAGTTAACTGGTGCATCAATTCAAGTTGCTAGTGAAGCTTTACCAACATCCACAGAAAGAACAGTTACAATATCAGGTACAGCGGATTCAATCTCCAAATGTATTCGTCTATTGTGTGATATATTTTTAGAGTGTCCAAATAAGGGTCCGGTCATTCTTTATCGACCAAAACCTGTCATTGGTAATCCAGGATTAATATGTCCTGCCACTACATTTTCATCTGGTTTACTTCATTCAAACTTGTCTGGACTTCCACTTTCAGTGTGCGAGAATTCACATGAATCAGGATATACTACACCAATATTAACATCAGCCTCGTTACTATCTAACGAAGTGAACTCTGTTAGTCCAACTTTAAATAGAACTTATGCGAATCAGTTTGGGATACCATCTGGTATTTTATCTGGTGGAACTGGAGTCTCAGGTTCATGTAGTGTTGGCTGTGGTGTCAATAATACATCTATCATACCCAATCTGCCTACAGCAAATACTATGCAATCTCCTCTAACAGTAATTAGTTCTGGTCGCCCAGTTAATCAAATGCCAGATCTCATTTCAGATCAAGTTCATTTGTTTGCTACATTGCATCAATTCGGTTTAGCTAACTTTCAATCATATTTTTCATCAATTTTGGCTCCATTACCAAAT]

[+] EMBL CD180864             [GTTTATTAGTACCAGTAGCTCAATGTGGTTCAATAATTGGTAAGGGAGGATCTAAGATTAAAGATGTTCGTGAGTTAACTGGTGCATCAATTCAAGTTGCTAGTGAAGCTTTACCAACATCCACAGAAAGAACAGTTACAATATCAGGTACAGCGGATTCAATCTCCAAATGTATTCGTCTATTGTGTGATATATTTTTAGAGTGTCCAAATAAGGGTCCGGTCATTCTTTATCGACCAAAACCTGTCATTGGTAATCCAGGATTAATATGTCCTGCCACTACATTTTCATCTGGTTTACTTCATTCAAACTTGTCTGGACTTCCACTTTCAGTGTGCGAGAATTCACATGAATCAGGATATACTACACCAATATTAACATCAGCCTCGTTACTATCTAACGAAGTGAACTCTGTTAGTCCAACTTTAAATAGAACTTATGCGAATCAGTTTGGGATACCATCT                                                                                                                                                                                                                                                               ]
[-] EMBL CD181056             [ TTTATTAGTACCAGTAGCTCAATGTGGTTCAATAATTGGTAAGGGAGGATCTAAGATTAAAGATGTTCGTGAGTTAACTGGTGCATCAATTCAAGTTGCTAGTGAATCTTTACCAACATCCACAGAAAGAACAGTTACAATATCAGGTACAGCGGATTCAATCTCCAAATGTATTCGACTATTGTGTGATATATTTTTAGAGTGTCCAAATAAGGGTCCGGTCATTCTTTATCGACCAAAACCTGTCATTGGTAATCCAGGATTAATATGTCCTGCCACTACATTTTCATCTGGTTTACTTCATTCAAACTTGTCTGGACTTCCACTTTCAGTGTGCGAGAATTCACATGAATCAGGATATACTACACCAATATTAACATCAGCCTCGTTACTATCTAACGAAGTGAACTCTGTTAGTCCAACTTTAAATAGAATTTATGCGAATCAGTTTGGGATACCATCTG                                                                                                                                                                                                                                                              ]
[-] EMBL CD072348             [                                                                                                                                                                                                                                                                                                                                                             TGAATCAGGATATACTACACCAATATTATCATCAGCCTCGTCACTATCTAACGAAGTGAGCTCTGTTAGTCCAACTTTAAATAGATCTTATGCGAATCAGTTTGGGATACCATCTGGTATTTTATCTGGTGGAACTGGAGTCTCAGGTTCATGTAGTGTTGGCTGTGGTGTCAATAATACATCTATCATACCCAATCTGCCTACAGCAAATACTATGCAATCTCCTCTAACAGTAATTAGTTCTGGTCGCCCAGTTAATCAAATGCCAGATCTCATTTCAGATCAAGTTCATTTGTTTGCTACATTGCATCAATTCGGTTTAG                                               ]
[-] EMBL CD072354             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTTCATGTAGTGTTGGCTGTGGTGTCAATAATACATCTATCATACTCAATCTGCCTACAGCAAATACTATGCAATCTCCTCTAACAGTAATTGGTTCTGGTCGACCAGTTAATCAAATGTCAGATCTCATTTCAGATCAAGTTCATTTGTTTGCTACATTGAATCAATTAGATTTAGCTAACTTTCAATCATATTTTTCATCAATTTTGGCTCCATTACCAAAT]




>consensus_7781#0
GTTTATTAGTACCAGTAGCTCAATGTGGTTCAATAATTGGTAAGGGAGGATCTAAGATTA
AAGATGTTCGTGAGTTAACTGGTGCATCAATTCAAGTTGCTAGTGAAGCTTTACCAACAT
CCACAGAAAGAACAGTTACAATATCAGGTACAGCGGATTCAATCTCCAAATGTATTCGTC
TATTGTGTGATATATTTTTAGAGTGTCCAAATAAGGGTCCGGTCATTCTTTATCGACCAA
AACCTGTCATTGGTAATCCAGGATTAATATGTCCTGCCACTACATTTTCATCTGGTTTAC
TTCATTCAAACTTGTCTGGACTTCCACTTTCAGTGTGCGAGAATTCACATGAATCAGGAT
ATACTACACCAATATTAACATCAGCCTCGTTACTATCTAACGAAGTGAACTCTGTTAGTC
CAACTTTAAATAGAACTTATGCGAATCAGTTTGGGATACCATCTGGTATTTTATCTGGTG
GAACTGGAGTCTCAGGTTCATGTAGTGTTGGCTGTGGTGTCAATAATACATCTATCATAC
CCAATCTGCCTACAGCAAATACTATGCAATCTCCTCTAACAGTAATTAGTTCTGGTCGCC
CAGTTAATCAAATGCCAGATCTCATTTCAGATCAAGTTCATTTGTTTGCTACATTGCATC
AATTCGGTTTAGCTAACTTTCAATCATATTTTTCATCAATTTTGGCTCCATTACCAAAT

consensusID : consensus_7781#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [CATCACTGCCATGTTGGTAAGCTTTCACGTAGCGAGCTTGAAATTGATGGAAGCAGCCCAACTGTCCTCGCAGTGAGCCTTACCGTTTATTTAGTAGCCAAGTAGGCTCAATCGTGGTTCTAATAAGTTGGTAAGGGGAGGATCTTAAGGATTAAAGAATGTTTCGGGGAGTTAACGGGGGGCATGCAAGTTCAAGGTTGCTAGTGAAGCTTTACCAAAAATCAAAGGAAAGAACAGTTACAATATCAGGTACAGCGGATTCAATCTCCAAATGTATTCGACTATTGTGTGATATATTTTTAGAGTGTCCAAATAAGGGTCCGGTCATTCTTTATCGACCAAAACCTGTCATTGGTAATCCAGGATTAATATGTCCTGCCACTACATTTTCATCTGGTTTACTTCATTCAAACTTGTCTGGAC]

[-] EMBL CD187361             [CATCACTGCCATGTTGGTAAGCTTTCACGTAGCGAGCTTGAAATTGATGGAAGCAGCCCAACTGTCCTCGCAGTGAGCCTTACCGTTTATTTAGTAGCCAAGTAGGCTCAATCGTGGTTCTAATAAGTTGGTAAGGGGAGGATCTTAAGGATTAAAGAATGTTTCGGGGAGTTAACGGGGGGCATGCAAGTTCAAGGTTGCTAGTGAAGCTTTACCAAAAATCAAAGGAAAGAACAGTTACAATATCAGGTACAGCGGATTCAATCTCCAAATGTATTCGACTATTGTGTGATATATTTTTAGAGTGTCCAAATAAGGGTCCGGTCATTCTTTATCGACCAAAACCTGTCATTGGTAATCCAGGATTAATATGTCCTGCCACTACATTTTCATCTGGTTTACTTCATTCAAACTTGTCTGGAC]




>consensus_7781#1
CATCACTGCCATGTTGGTAAGCTTTCACGTAGCGAGCTTGAAATTGATGGAAGCAGCCCA
ACTGTCCTCGCAGTGAGCCTTACCGTTTATTTAGTAGCCAAGTAGGCTCAATCGTGGTTC
TAATAAGTTGGTAAGGGGAGGATCTTAAGGATTAAAGAATGTTTCGGGGAGTTAACGGGG
GGCATGCAAGTTCAAGGTTGCTAGTGAAGCTTTACCAAAAATCAAAGGAAAGAACAGTTA
CAATATCAGGTACAGCGGATTCAATCTCCAAATGTATTCGACTATTGTGTGATATATTTT
TAGAGTGTCCAAATAAGGGTCCGGTCATTCTTTATCGACCAAAACCTGTCATTGGTAATC
CAGGATTAATATGTCCTGCCACTACATTTTCATCTGGTTTACTTCATTCAAACTTGTCTG
GAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7781#0      ------------------------------------------------------------
consensus_7781#1      CATCACTGCCATGTTGGTAAGCTTTCACGTAGCGAGCTTGAAATTGATGGAAGCAGCCCA 60
                                                                                  

consensus_7781#0      ------------------------GTTTATT-AGTACC--AGTAG-CTCAAT-GTGGTTC 31
consensus_7781#1      ACTGTCCTCGCAGTGAGCCTTACCGTTTATTTAGTAGCCAAGTAGGCTCAATCGTGGTTC 120
                                              ******* **** *  ***** ****** *******

consensus_7781#0      -AATAA-TTGGTAAGGG-AGGATCT--AAGATTAAAGA-TGTTC--GTGAGTTAACTGGT 83
consensus_7781#1      TAATAAGTTGGTAAGGGGAGGATCTTAAGGATTAAAGAATGTTTCGGGGAGTTAACGGGG 180
                       ***** ********** *******  * ********* ****   * ******** ** 

consensus_7781#0      G---CATCAATTCAAG-TTGCTAGTGAAGCTTTACCAACATCCACAG-AAAGAACAGTTA 138
consensus_7781#1      GGCATGCAAGTTCAAGGTTGCTAGTGAAGCTTTACCAAAAATCAAAGGAAAGAACAGTTA 240
                      *       * ****** ********************* *  ** ** ************

consensus_7781#0      CAATATCAGGTACAGCGGATTCAATCTCCAAATGTATTCGTCTATTGTGTGATATATTTT 198
consensus_7781#1      CAATATCAGGTACAGCGGATTCAATCTCCAAATGTATTCGACTATTGTGTGATATATTTT 300
                      **************************************** *******************

consensus_7781#0      TAGAGTGTCCAAATAAGGGTCCGGTCATTCTTTATCGACCAAAACCTGTCATTGGTAATC 258
consensus_7781#1      TAGAGTGTCCAAATAAGGGTCCGGTCATTCTTTATCGACCAAAACCTGTCATTGGTAATC 360
                      ************************************************************

consensus_7781#0      CAGGATTAATATGTCCTGCCACTACATTTTCATCTGGTTTACTTCATTCAAACTTGTCTG 318
consensus_7781#1      CAGGATTAATATGTCCTGCCACTACATTTTCATCTGGTTTACTTCATTCAAACTTGTCTG 420
                      ************************************************************

consensus_7781#0      GACTTCCACTTTCAGTGTGCGAGAATTCACATGAATCAGGATATACTACACCAATATTAA 378
consensus_7781#1      GAC--------------------------------------------------------- 423
                      ***                                                         

consensus_7781#0      CATCAGCCTCGTTACTATCTAACGAAGTGAACTCTGTTAGTCCAACTTTAAATAGAACTT 438
consensus_7781#1      ------------------------------------------------------------
                                                                                  

consensus_7781#0      ATGCGAATCAGTTTGGGATACCATCTGGTATTTTATCTGGTGGAACTGGAGTCTCAGGTT 498
consensus_7781#1      ------------------------------------------------------------
                                                                                  

consensus_7781#0      CATGTAGTGTTGGCTGTGGTGTCAATAATACATCTATCATACCCAATCTGCCTACAGCAA 558
consensus_7781#1      ------------------------------------------------------------
                                                                                  

consensus_7781#0      ATACTATGCAATCTCCTCTAACAGTAATTAGTTCTGGTCGCCCAGTTAATCAAATGCCAG 618
consensus_7781#1      ------------------------------------------------------------
                                                                                  

consensus_7781#0      ATCTCATTTCAGATCAAGTTCATTTGTTTGCTACATTGCATCAATTCGGTTTAGCTAACT 678
consensus_7781#1      ------------------------------------------------------------
                                                                                  

consensus_7781#0      TTCAATCATATTTTTCATCAATTTTGGCTCCATTACCAAAT 719
consensus_7781#1      -----------------------------------------