cluster # 7782

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Schistosoma mansoni
cluster # 7782 cluster # 7782 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7782#0 length = 458 sequences # 4

consensus_7782#1 length = 315 sequences # 1

consensusID : consensus_7782#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 458
fasta sequence

                              [ATGTGCGACCAGTGGTTGTACATTATTGACTCCGTTGCGATTAGTTGGACCTTCGTTTCCAACATTATTGAACAAGTTCCGAACAAGTATACCAAATGCTGCGTTTTCCGACCGTTGTGT-CCTGTTATGACTATGAAGAAGTATATGAGGTATGCCCAAATCACGCCGACAAGTAGGACAGCTTGGATTCTGTTCAAGCCAAGCACGAAGACAGTGTTCGTGGAAGTCATGTCGACATGGTAATCGACGCCAAGATGTCATAACATCCCAACATATCGCACAAATCAGTGCA-GATTGATTTTCGGTATCAAAGTAGAACATTTGTGAAGTCTTATCATCTGTTTCTGTTTTTGCACTAGCATCCTTGGAAGCGAGATAATGCCCTGTCTTGCAAGCCTGGTAGTTCTCATTGATGTATTTCATTAGTCGTCTTTGAGCTAAGTGGCGAGATATACTGT]

[+] EMBL CD165829             [ATGTGCGACCAGTGGTTGTACATTATTGACTCCGTTGCGATTAGTTGGACCTTCGTTTCCAACATTATTGAACAAGTTCCGAACAAGTATACCAAATGCTGCGTTTTCCGACCGTTGTGT CCTGTTATGACTATGAAGAAGTATATGAGGTATGCCCAAATCACGCCGACAAGTAGGACAGCTTGGATTCTGTTCAAGCCAAGCACGAAGACAGTGTTCGTGGAAGTCATGTCGACATGGTAACCGACGCCAAGATGTCATAACATCCCAACATATCGCACAAATCAGTGCA GATTGATTTTCGGTATCAAAGTAGAACATTTGTGAAGTCTTATCATCTGTTTCTGTTTTTGCACTAGCATCCTTGGAAGCGAGATAATGCCCTGTCTTGCAAGCCTGGTAGTTCTCATTGATGTATTTCATTAGTCGTCTTTGAGCTAAGTGGCGAGA        ]
[+] EMBL CD165855             [   TGCGACCAGTGGTTGTACATTATTGACTCCGTTGCGATTAGTTGGACCTTCGTTTCCAACATTATTGAACAAGTTCCGAACAAGTATACCAAATGCTGCGTTTTCCGACCGTTGTGTCCCTGTTATGACTATGAAGAAGTATATGAGGTATGCCCAAATCACACCGACAAGTAGGACAGCTTGGATTCTGTTCAAGCCAAGCACGAAGACAGTGTTCGTGGAAGTCATGTCGACATGGTAATCGACGCCAAGATGTCATAACATCCCAACATATCGCACAAATCAGTGCA GATTGATTTTCGGTATCAAAGTAGAACATTTGTGAAGTCTTATCAACTGTTTCTGTTTTTGCACTAGCATCCTTGGAAGCGAGATAATGCCCTGTCTTGCAAGCCTGGTAGTTCTCATTGATGTATTTCATTAGTCGTCTTTGAGCTAGGTGGCGAGATATACTGT]
[-] EMBL CD060062             [                                   TGCGGTTAGTTGGACCTTCGTTTCCAACATTATTGAACAAGTTCCGAACAAGTATACCAAATGCTGCGTTTTCCGACCGTTGTGT CCTGTTATGACTATGAAGAAGTACATGAGGTATGCCCAAATCACGCCGACAAGTAGGACAGCTTGGATTCTGTTCAAGCCAAGCACGAAGACAGTGTTCGTGGAAGTCATGTCGACATGGTAATCGACGCCAAGATGTCATAACATCCCAACATATCGCACAAATCAG CCACGCCTGATTTTCGGTATCAAAGTAGAACAAAAGAAAAGTCTTATCATCTGTTTCTGTTTTT                                                                                                          ]
[+] EMBL CD063239             [                                                                                                                                                              AAACCACGCCGACAAGTAGGGCAGCTTGGATTCTGTTCAAGCCAAGCACGAAGACAGTGTTCGTGGAAGTCATGTCGACATGGTAATCGACGCCAAGATGTCATAACATCCCAACATATCGCACAAATCAGTGCA GATTGATTTTCGGTATCAAAGTAGAACATTTGTGAAGTCTTATCATCTGTTTCTGTTTTTGCACTAGCATCCTTGGAAGCGAGATAATGCCCTGTCTTGCAAG                                                               ]




>consensus_7782#0
ATGTGCGACCAGTGGTTGTACATTATTGACTCCGTTGCGATTAGTTGGACCTTCGTTTCC
AACATTATTGAACAAGTTCCGAACAAGTATACCAAATGCTGCGTTTTCCGACCGTTGTGT
CCTGTTATGACTATGAAGAAGTATATGAGGTATGCCCAAATCACGCCGACAAGTAGGACA
GCTTGGATTCTGTTCAAGCCAAGCACGAAGACAGTGTTCGTGGAAGTCATGTCGACATGG
TAATCGACGCCAAGATGTCATAACATCCCAACATATCGCACAAATCAGTGCAGATTGATT
TTCGGTATCAAAGTAGAACATTTGTGAAGTCTTATCATCTGTTTCTGTTTTTGCACTAGC
ATCCTTGGAAGCGAGATAATGCCCTGTCTTGCAAGCCTGGTAGTTCTCATTGATGTATTT
CATTAGTCGTCTTTGAGCTAAGTGGCGAGATATACTGT

consensusID : consensus_7782#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence

                              [TACCGTGATGTATCGCCCACACATCGCACAAATCAGTGCAGATGATTTTCGGTATCAAAGTAGAACATTTGTGAAGTCTTATCATCTGTTTCTGTTTTTGCACTAGCATCCTTGGAAGCGAGATAATGCCCTGTCTTGCAAGCCTGGTAGTTCTCATTGATGTATTTCATTAGTCGTCTTTGAGCTAGGTGGCGAGATATACTGTTAGCCAAGTTTGAGTAAGATACACGTATATGCAAGAAAACAACAAGGCTAGCGACAGAAAACACTCTACTCCACAATAAAAGATGTAGATAGTGTGTTATTTCTGTGTTG]

[+] EMBL CD063955             [TACCGTGATGTATCGCCCACACATCGCACAAATCAGTGCAGATGATTTTCGGTATCAAAGTAGAACATTTGTGAAGTCTTATCATCTGTTTCTGTTTTTGCACTAGCATCCTTGGAAGCGAGATAATGCCCTGTCTTGCAAGCCTGGTAGTTCTCATTGATGTATTTCATTAGTCGTCTTTGAGCTAGGTGGCGAGATATACTGTTAGCCAAGTTTGAGTAAGATACACGTATATGCAAGAAAACAACAAGGCTAGCGACAGAAAACACTCTACTCCACAATAAAAGATGTAGATAGTGTGTTATTTCTGTGTTG]




>consensus_7782#1
TACCGTGATGTATCGCCCACACATCGCACAAATCAGTGCAGATGATTTTCGGTATCAAAG
TAGAACATTTGTGAAGTCTTATCATCTGTTTCTGTTTTTGCACTAGCATCCTTGGAAGCG
AGATAATGCCCTGTCTTGCAAGCCTGGTAGTTCTCATTGATGTATTTCATTAGTCGTCTT
TGAGCTAGGTGGCGAGATATACTGTTAGCCAAGTTTGAGTAAGATACACGTATATGCAAG
AAAACAACAAGGCTAGCGACAGAAAACACTCTACTCCACAATAAAAGATGTAGATAGTGT
GTTATTTCTGTGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7782#0      ATGTGCGACCAGTGGTTGTACATTATTGACTCCGTTGCGATTAGTTGGACCTTCGTTTCC 60
consensus_7782#1      ------------------------------------------------------------
                                                                                  

consensus_7782#0      AACATTATTGAACAAGTTCCGAACAAGTATACCAAATGCTGCGTTTTCCGACCGTTGTGT 120
consensus_7782#1      ------------------------------------------------------------
                                                                                  

consensus_7782#0      CCTGTTATGACTATGAAGAAGTATATGAGGTATGCCCAAATCACGCCGACAAGTAGGACA 180
consensus_7782#1      ------------------------------------------------------------
                                                                                  

consensus_7782#0      GCTTGGATTCTGTTCAAGCCAAGCACGAAGACAGTGTTCGTGGAAGTCATGTCGACATGG 240
consensus_7782#1      ------------------------------------------------------------
                                                                                  

consensus_7782#0      TAATCGACGCCAAGATGTCATAACATCCCAACATATCGCACAAATCAGTGCAGATTGATT 300
consensus_7782#1      ----------TACCGTGATGTATCGCCC--ACACATCGCACAAATCAGTGCAGAT-GATT 47
                                 *   **   ** *  **  *** ********************* ****

consensus_7782#0      TTCGGTATCAAAGTAGAACATTTGTGAAGTCTTATCATCTGTTTCTGTTTTTGCACTAGC 360
consensus_7782#1      TTCGGTATCAAAGTAGAACATTTGTGAAGTCTTATCATCTGTTTCTGTTTTTGCACTAGC 107
                      ************************************************************

consensus_7782#0      ATCCTTGGAAGCGAGATAATGCCCTGTCTTGCAAGCCTGGTAGTTCTCATTGATGTATTT 420
consensus_7782#1      ATCCTTGGAAGCGAGATAATGCCCTGTCTTGCAAGCCTGGTAGTTCTCATTGATGTATTT 167
                      ************************************************************

consensus_7782#0      CATTAGTCGTCTTTGAGCTAAGTGGCGAGATATACTGT---------------------- 458
consensus_7782#1      CATTAGTCGTCTTTGAGCTAGGTGGCGAGATATACTGTTAGCCAAGTTTGAGTAAGATAC 227
                      ******************** *****************                      

consensus_7782#0      ------------------------------------------------------------
consensus_7782#1      ACGTATATGCAAGAAAACAACAAGGCTAGCGACAGAAAACACTCTACTCCACAATAAAAG 287
                                                                                  

consensus_7782#0      ----------------------------
consensus_7782#1      ATGTAGATAGTGTGTTATTTCTGTGTTG 315