These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7787#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 574 fasta sequence [AGGTTTCACGACTCCAGCTTTTGTACACTTATTTACAATACTTGAAATTATCTAAGACGATTGATCGAACACTTCTACATATTGAAACTACTATTTCTAGCCTAGCAGAGGGAAGTCACAAACGAAATCAACTTGCTACTAGTGCTTATCCTAAACCACAAGAACTGTCTCGTCTGTATGATACTTTAGTACAAAATTTTCAAGAGATTATCTCTCTACCATGTCTGGTGCAAGATCATATTGGTTTGAAGGATCTATTGTATGCAAAAATGCTGTCTTATCGTAGTTATAGGTGCTATTATTTGGCTCTTGCCTACAACTGTAGT-AAAAAATACACTGAATGCTCTGCTCTTCTTACAAGGGCTATTCAACATGCCGAAAAAGCTGTCACTTCTCTTGAACATTCCATTTCAACCTGGACTAAAGCTGAGGAATGTATTGCGCCTGGTCCCAGTCCTGATGCCCTATCAAAATCTCTTCAGTCGCTTATATTACAAGCTGAGTCAGAAGATTTCACTTGCAAAGCAGCCTCGATGCTTGACAAAGTAGAAGAAAATGAACCAGTGTCTACCAC] [-] EMBL CD067045 [AGGTTTCACGACTCCAGCTTTTGTACACTTATTTACAATACTTGAAATTATCTAAGACGATTGATCGAACACTTCTACATATTGAAACTACTATTTCTAGCCTAGCAGAGGGAAGTCACAAACGAAATCAACTTGCTACTAGTGCTTATCCTAAACCACAAGAACTGTCTCGTCTGTATGATACTTTAGTACAAAATTTTCAAGAGATTATCTCTCTACCATGTCTGGTGCAAGATCATATTGGTTTGAAGGATCTATTGTATGCAAAAATGCTGTCTTATCGTAGTTATAGGTGCTATTATTTGGCTCTTGCCTACAACTGTAGT AAAAAATACACTGAATGCTCTGCTCTTCTTACAAGGGCTATTCAACATGCCGAAAAAGCTGTCACTTCTCTTGAACATTCCATTTCAACCTGGACTAAAGCTGAGGAATGTATTGCGCC ] [+] EMBL CD167069 [ ACTACTATTTCTAGCCTAGCAGAAGGAAGTCACAAACGAAATCAACTTGCTACTAGTGCTTATCCTAAACCACAAGAACTGTCTCGTCTGTATGATACTTTAATACAAAATTTTCAAGAGATTATCTCTCTACCATGTCTGGTGCAAGATCATATTGGTTTGGAGGATCTATTGTATGCAAAAATGCTGTCTTATCGTAGTTATAAGTGCTATTATTTGGCTCTTGCCTACAACTGTAGT AAAAAATACACTGAATGCTCTGCTCTTCTTACAAGGGCTATTCAACATGCCGAAAAAGCT ] [-] EMBL CD066477 [ CTAGCATAGCAGAGGGAAGTCACAAACGAAATCAACTTGCTACTAGTGCTTATCCTAAACCACAAGAACTGTCTCGTCTGTATGATACTTTAGTACAAAATTTTCAAGAGATTATCTCTCTACCATGTCTGGTGCAAGATCATATTGGTTTGAAGGATCTATTGTATGCAAAAATGCTGTCTTATCGTAGTTATAGGTGCTATTATTTGGCTCTTGCCTACAACTGTAGT AAAAAATACACTGAATGCTCTGCTCTTCTTACAAGGGCTATTCAACATGCCGAAAAAGCTGTCACTTCTCTTGAACATTCCATTTCAACCTGGACTAAAGCTGAGGAATGTATTGCGCC ] [-] EMBL CD149170 [ CTCTCTACCATGTCTGGTGCAAGATCATATTGGTTTGAAGGATCTATTGTATGCAAAAATGCTGTCTTATCGTAGTTATAGGTGCTATTATTTGGCTCTTGCCTACAACTGTAGTAAAAAAATACACTGAATGCTCTGCTCTTCTTACAAGGGCTATTCAACATGCCGAAAAAGCTGTCACTTCTCTTGAACATTCCATTTCAACCTGGACTAAAGCTGAGGAATGTATTGCGCCTGGTCCCAGTCCTGATGCCCTATCAAAATCTCTTCAGTCGCTTATATTACAAGCTGAGTCAGAAGATTTCACTTGCAAAGCAGCCTCGATGCTTGACAAAGTAGAAGAAAATGAACCAGTGTCTACCAC] consensusID : consensus_7787#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [GTAATATTAAATTTGAGCACTAATCCACGTTATAGTATACGAGAAGAATATACCAGAAGAGAAATATGATTCAACCTGAAGTACACAATAACTAAAATACAGTACCAATATCTGTATGAAAACGGAAAGAACGATCAAACCTATAGACAAAGTAGTATCACAACACCATATTTAAGATTCTGTTGGCTCTGAACCTCGCCATAGCCATCCACGCATAAGACCTGTAAGACCAGAAGATTTGGAAGGTGCACTAGCCTTTAGACCTATTTTGTCGTCCAAAGATGGAAAATTAATATGATTTAAAGCAAGGTCAAAGAAAATTGGTTTCACAGGGACAGGATGAAACTTGGGAGGTAGATGAACAAAGGGATAAACAAAGTTATTGAATGATTTCTCGACAGATTTCTCGTCCGCATAGATATCCAGGCGGTCAATAAGAACTTTTCGTGAAGCATCTACTCCTGTAGTACCAGCAAGGGGGAGTGGTAGACACTGGGTTCATTTTCTTCTACTT] [+] EMBL BF936615 [GTAATATTAAATTTGAGCACTAATCCACGTTATAGTATACGAGAAGAATATACCAGAAGAGAAATATGATTCAACCTGAAGTACACAATAACTAAAATACAGTACCAATATCTGTATGAAAACGGAAAGAACGATCAAACCTATAGACAAAGTAGTATCACAACACCATATTTAAGATTCTGTTGGCTCTGAACCTCGCCATAGCCATCCACGCATAAGACCTGTAAGACCAGAAGATTTGGAAGGTGCACTAGCCTTTAGACCTATTTTGTCGTCCAAAGATGGAAAATTAATATGATTTAAAGCAAGGTCAAAGAAAATTGGTTTCACAGGGACAGGATGAAACTTGGGAGGTAGATGAACAAAGGGATAAACAAAGTTATTGAATGATTTCTCGACAGATTTCTCGTCCGCATAGATATCCAGGCGGTCAATAAGAACTTTTCGTGAAGCATCTACTCCTGTAGTACCAGCAAGGGGGAGTGGTAGACACTGGGTTCATTTTCTTCTACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7787#0 AGGTTTCACGACTCCAGCTTTTGTACACTTATTTACAATACTTGAAATTATCTAAGACGA 60 consensus_7787#1 ----------------GTAATATTAAATTTGA--GCACTAATCCACGTTATAGTATACGA 42 * * ** * ** ** ** * * **** * **** consensus_7787#0 TTGATCGAACACTTCTACATATTGAAACTACTATTTCTAGCCTAGCAGAGGGAAGTCACA 120 consensus_7787#1 ------GAAGAATATACCAGAAGAGAAATATGATTC--AACCT----GAAGTACACAATA 90 *** * * ** * ** ** *** * *** ** * * * * consensus_7787#0 AACGAAATCAACTTGCTACTAGTGCTTATCCTAAACCACAA-GAACTGTCTCGTCTGTAT 179 consensus_7787#1 ACTAAAATA----CAGTACCAATATCTGTATGAAAACGGAAAGAACGATCAAACCTATA- 145 * **** *** * * * * *** * ** **** ** ** ** consensus_7787#0 GATACTTTAGTACAAAATTTTCAAGAGATTATCTCTCTACCATGTCTGGTGCAAGATCAT 239 consensus_7787#1 GACAAAGTAGTATCACAACACCATA--TTTAAGATTCTGTTGGCTCTGA-ACCTCGCCAT 202 ** * ***** * * ** *** *** **** * *** consensus_7787#0 ATTGGTTTGAAGGATCTATTGTATGCAAAAATGCTGTCTTATCGTAGTTATAGGTGCTAT 299 consensus_7787#1 AGCCATCC-ACGCATAAGACCTGTAAGACCAGAAGATTTGGAAGGTGCACTAGCCTTTAG 261 * * * * ** * * * * * * * * *** ** consensus_7787#0 TATTTGGCTCTTGCCTACAACTGTAGTAAAAAATACACTGAATGCTCTGCTCTTCTTACA 359 consensus_7787#1 ACCTATTTTGTCGTCCAAAGATGGAAAATTAATATGATTTAAAGCAAGG----TCAAAGA 317 * * * * * * * ** * * ** * * ** ** * ** * * consensus_7787#0 AGGGCTATTCAACATGCCGAAAAAGCTGTCACTTCTCTTGAACATTCCATTTCAACCTGG 419 consensus_7787#1 AAATTGGTTTCACA---GGGACAGGATGAAACTTGGGAGGTAGATG--AACAAAGGGATA 372 * ** *** * * * * ** **** * * ** * * consensus_7787#0 ACTAAAGCTGAGGAATGTATTGCGCCTGGTCCCAGTCCTGATGCCCTATCAAAATCTCTT 479 consensus_7787#1 AACAAAGTTATTGAATGATTT----CTCGACAGATTTCTCGT-CCGCATAGATATCCAGG 427 * **** * ***** ** ** * * * * ** * ** ** * *** consensus_7787#0 CAGTCGCTTATATTACAAGCTGAGTCAGAAGATTTCACTTGCAAAGCAGCCTCGATGCTT 539 consensus_7787#1 CGGTC------AATAAGAACTTTTCGTGAAGCATCTACTCCTGTAGTACCAGCAA----- 476 * *** * ** * ** **** * *** ** * * * * consensus_7787#0 GACAAAGTAGAAGAAAATGAAC-CAGTGTCTACCAC-- 574 consensus_7787#1 GGGGGAGTGGTAGACACTGGGTTCATTTTCTTCTACTT 514 * *** * *** * ** ** * *** * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||