cluster # 7789

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Schistosoma mansoni
cluster # 7789 cluster # 7789 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7789#0 length = 1108 sequences # 4

consensus_7789#1 length = 582 sequences # 1

consensusID : consensus_7789#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1108
fasta sequence

                              [TTTTGGTCGAGCTAACTGAGTAACTTTCATTTTGGATTCTTTTATATGACATTCATACCAGTCAC--GATTATCTTCCAATGTATCTAGAATTAATTGAGCACAGGGGTGTACTAGATCACACCATGTTTCCCATAATGGGTGACACACAAAATCAATGAAGCTAACCTGGGACTTTTCAACTTCTACCGATTCACGATCACACATTGGGCTAATTTCCAATGACAACTCTCTTTCTTTATCCCCCTGTCTGAAAAATTCTTCAATTAAACGTCCAGTCCATTTACGATATAATCGTAATGGCTTAGCTGGATTACTAAGATCAGCACAATGAATCATATTTTGTAATATCTGTATACGATCAGCATAATTGTCCAAATTCAACATACCGGATCCAGAAACTTTTTTAGTTTCAACCATTGTTCTTAAATCAGCTAATAAACTCATATGCTTAGACATATCTGTTGCTAACACCAATTCTATAACCATTCTACGTAATGTTTGACGTTTTTTTCCACCTAAATTAGCAAATATATCACAGTCTTTTTCACGTTAAAATTTTAAATGCCATATAAAGATGATGGTTTTCCAGAACGGATGCATCATTATATTGTAAGGCTAATTCATGACCAGTATTGATTAGAAATTGATTAGTTACTCCAGGATGATCTACGTCATGTATAGCTGCGGCAAACAAAACAGCTAAAATTTCCAAATCGCTGAAAACATCGTCCAATGCTTCTGCTTGTAGCAAAAAAATGTGCTGTTTGAAGAACATCGGCTGCATGCATTGAGTTATGATAAGGAACATCAGCATGATAAGTTGATTCAACTCTTAACAGATAACGTACAAAAACATGAGGATCAATACAAAATGTTTTGAGTAGATCACGTTTCTGAAATATTCTATAGGCAACTGTTGTAAGAGCATGTCCATTAGAAAGTCGATCAATTTCAAAGATATCTACACCCCATTCGTCCAAACACAGTGAGAATCTTTCCTCCAACTCATTATCATTAGGCGTTTCAACCCCATGAATTGGTAGGAATGGCCCGTTACCGTCGTCTACATTTTGACTCGTTAACTTTGAACTGGATGGCAATTTTGTTG]

[-] EMBL AI975310             [TTTTGGTCGAGCTAACTGAGTAACTTTCATTTTGGATTCTTTTATATGACATTCATACCAGTCAC  GATTATCTTCCAATGTATCTAGAATTAATTGAGCACAGGGGTGTACTAGATCACACCATGTTTCCCATAATGGGTGACACACAAAATCAATGAAGCTAACCTGGGACTTTTCAACTTCTACCGATTCACGATCACACATTGGGCTAATTTCCAATGACAACTCTCTTTCTTTATCCCCCTGTCTGAAAAATTCTTCAATTAAACGTCCAGTCCATTTACGATATAATCGTAATGGCTTAGCTGGATTACTAAGATCAGCACAATGAATCATATTTTGTAATATCTGTATACGATCAGCATAATTGTCCAAATTCAACATACCGGATCCAGAAACTTTTTTAGTTTCAACCATTGTTCTTAAATCAGCTAATAAACTCATATGCTTAGACATATCTGTTGCTAACACCAATTCTATAACCATTCTACGTAATGTTTGACGTTTTTTTCCACCTAAATTAGCAAATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL SM3701               [  TTGGTCGAGCTAACTGAGTAACTTTCATTTTGGATTCTTTTATATGACATTCATACCAGTCACCTGATTATCTTCCAATGTATCTAGAATTAATTGAGCACAGGGGTGTACTAGATCACACCATGTTTCCCATAATGGGTGACACACAAAATCAATGAAGCTAACCTGAGACTTTTCAACTTCTACCGATTCACGATCACACATTGGGCTAATTTCCAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD133180             [                                                                                                                                                                                     CTTCTACCGATTCACGATCACACATTGGGCTAATTTCCAATGACAACTCTCTTTCTTTATCCCCCTGTCTGAAAAATTCTTCAATTAAACGTCCAGTCCATTTACGATATAATCGTAATGGCTTAGCTGGATTACTAAGATCAGCACAATGAATCATATTTTGTAATATCTGTATACGATCAGCATAATTGTCCAAATTTAACATACCGGATCCAGAAACTTTTTTAGTTTCAACCATTGTTCTTAAATCAGCTAATAAACTCATATGCTTAGACATATCTGTTGCTAACACCAATTCTATAACCATTCTACGTAATGTTTGACGTTTTTTTCCACCTAAATTAGCAAATATATCACAGTCTTTTTCACGTTAAAATTTTAAATGCCATATAAAGATGATGGTTTTCCAGAACGGATGCATCATTATATTGTAAGGCTAATTCATGACCAGTATTGATTAGAAATTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD168671             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AAATATATCACAGTCTTTTTCA GTTAAAATTTTAAATGCCATATAAAGATGATGGTTTTCCAGAACGGATGCATCATTATATTGTAAGGCTAATTCATGACCAGTATTGATTAGAAATTGATTAGTTACTCCAGGATGATCTACGTCATGTATAGCTGCGGCAAACAAAACAGCTAAAATTTCCAAATCGCTGAAAACATCGTCCAATGCTTCTGCTTGTAGCAAAAAAATGTGCTGTTTGAAGAACATCGGCTGCATGCATTGAGTTATGATAAGGAACATCAGCATGATAAGTTGATTCAACTCTTAACAGATAACGTACAAAAACATGAGGATCAATACAAAATGTTTTGAGTAGATCACGTTTCTGAAATATTCTATAGGCAACTGTTGTAAGAGCATGTCCATTAGAAAGTCGATCAATTTCAAAGATATCTACACCCCATTCGTCCAAACACAGTGAGAATCTTTCCTCCAACTCATTATCATTAGGCGTTTCAACCCCATGAATTGGTAGGAATGGCCCGTTACCGTCGTCTACATTTTGACTCGTTAACTTTGAACTGGATGGCAATTTTGTTG]




>consensus_7789#0
TTTTGGTCGAGCTAACTGAGTAACTTTCATTTTGGATTCTTTTATATGACATTCATACCA
GTCACGATTATCTTCCAATGTATCTAGAATTAATTGAGCACAGGGGTGTACTAGATCACA
CCATGTTTCCCATAATGGGTGACACACAAAATCAATGAAGCTAACCTGGGACTTTTCAAC
TTCTACCGATTCACGATCACACATTGGGCTAATTTCCAATGACAACTCTCTTTCTTTATC
CCCCTGTCTGAAAAATTCTTCAATTAAACGTCCAGTCCATTTACGATATAATCGTAATGG
CTTAGCTGGATTACTAAGATCAGCACAATGAATCATATTTTGTAATATCTGTATACGATC
AGCATAATTGTCCAAATTCAACATACCGGATCCAGAAACTTTTTTAGTTTCAACCATTGT
TCTTAAATCAGCTAATAAACTCATATGCTTAGACATATCTGTTGCTAACACCAATTCTAT
AACCATTCTACGTAATGTTTGACGTTTTTTTCCACCTAAATTAGCAAATATATCACAGTC
TTTTTCACGTTAAAATTTTAAATGCCATATAAAGATGATGGTTTTCCAGAACGGATGCAT
CATTATATTGTAAGGCTAATTCATGACCAGTATTGATTAGAAATTGATTAGTTACTCCAG
GATGATCTACGTCATGTATAGCTGCGGCAAACAAAACAGCTAAAATTTCCAAATCGCTGA
AAACATCGTCCAATGCTTCTGCTTGTAGCAAAAAAATGTGCTGTTTGAAGAACATCGGCT
GCATGCATTGAGTTATGATAAGGAACATCAGCATGATAAGTTGATTCAACTCTTAACAGA
TAACGTACAAAAACATGAGGATCAATACAAAATGTTTTGAGTAGATCACGTTTCTGAAAT
ATTCTATAGGCAACTGTTGTAAGAGCATGTCCATTAGAAAGTCGATCAATTTCAAAGATA
TCTACACCCCATTCGTCCAAACACAGTGAGAATCTTTCCTCCAACTCATTATCATTAGGC
GTTTCAACCCCATGAATTGGTAGGAATGGCCCGTTACCGTCGTCTACATTTTGACTCGTT
AACTTTGAACTGGATGGCAATTTTGTTG

consensusID : consensus_7789#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence

                              [AATGTTAAATACCGTTAAAGATCGGATGATTGTTGGATGGCGAAACATTGCATTTTGTTACAAGTTTGAATGTGAGTTTCACATAACTTAGAGATGCCCTTTGTGTAACGAAGTGAAGAATCAAAATATGGAATACTTAAACTTATCCATATTTTGTAATGCTGGACATTTATGTTCAGGATCACTTCCACCAGTGGACCTAATTAGTCTCCTGAATACATACATATCTCGATTAGTCAGACAACTATATTGTCTAATTGAATAGTTTTGTCTCTCTTTGCTTTCAGTATTGGTAATTTAAGATTAGTTTGCATGTTTCAAAATTAACACGATAATATTTCGCCACACAAATTGTTTGAACTTACTTCCTCCAACTCATTATCATTAGGCGTTTCAACCCCATGAATTGGTAGGAATGGCCCGTTACCGTCGTCTACATTTTGACTCGTTAACTTTGAACCGGATGGCAATTTTGTTGTTAGCAAACCGCTAGAATCATTTAGTTGAGCGCTTTTACGAGATTCAGTTGACATACTTCCAGTTGATCCTATTCTTGTTTTTATAACTGATGAGGAAACTGAA]

[-] EMBL CD088517             [AATGTTAAATACCGTTAAAGATCGGATGATTGTTGGATGGCGAAACATTGCATTTTGTTACAAGTTTGAATGTGAGTTTCACATAACTTAGAGATGCCCTTTGTGTAACGAAGTGAAGAATCAAAATATGGAATACTTAAACTTATCCATATTTTGTAATGCTGGACATTTATGTTCAGGATCACTTCCACCAGTGGACCTAATTAGTCTCCTGAATACATACATATCTCGATTAGTCAGACAACTATATTGTCTAATTGAATAGTTTTGTCTCTCTTTGCTTTCAGTATTGGTAATTTAAGATTAGTTTGCATGTTTCAAAATTAACACGATAATATTTCGCCACACAAATTGTTTGAACTTACTTCCTCCAACTCATTATCATTAGGCGTTTCAACCCCATGAATTGGTAGGAATGGCCCGTTACCGTCGTCTACATTTTGACTCGTTAACTTTGAACCGGATGGCAATTTTGTTGTTAGCAAACCGCTAGAATCATTTAGTTGAGCGCTTTTACGAGATTCAGTTGACATACTTCCAGTTGATCCTATTCTTGTTTTTATAACTGATGAGGAAACTGAA]




>consensus_7789#1
AATGTTAAATACCGTTAAAGATCGGATGATTGTTGGATGGCGAAACATTGCATTTTGTTA
CAAGTTTGAATGTGAGTTTCACATAACTTAGAGATGCCCTTTGTGTAACGAAGTGAAGAA
TCAAAATATGGAATACTTAAACTTATCCATATTTTGTAATGCTGGACATTTATGTTCAGG
ATCACTTCCACCAGTGGACCTAATTAGTCTCCTGAATACATACATATCTCGATTAGTCAG
ACAACTATATTGTCTAATTGAATAGTTTTGTCTCTCTTTGCTTTCAGTATTGGTAATTTA
AGATTAGTTTGCATGTTTCAAAATTAACACGATAATATTTCGCCACACAAATTGTTTGAA
CTTACTTCCTCCAACTCATTATCATTAGGCGTTTCAACCCCATGAATTGGTAGGAATGGC
CCGTTACCGTCGTCTACATTTTGACTCGTTAACTTTGAACCGGATGGCAATTTTGTTGTT
AGCAAACCGCTAGAATCATTTAGTTGAGCGCTTTTACGAGATTCAGTTGACATACTTCCA
GTTGATCCTATTCTTGTTTTTATAACTGATGAGGAAACTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7789#0      TTTTGGTCGAGCTAACTGAGTAACTTTCATTTTGGATTCTTTTATATGACATTCATACCA 60
consensus_7789#1      ---------------------------AATGTTAAATACCGTTAAAGATCG--GATGATT 31
                                                  ** **  ** *  *** *   *    **    

consensus_7789#0      GTCACGATTATCTTCCAATGTATCTAGAATTAATTGAGCACAGGGGTGTACTAGATCACA 120
consensus_7789#1      GTTG-GATGGCGAAACATTGCATTTTGTTACAAGTTTGAATGTGAGTTT--CACATAACT 88
                      **   ***       ** ** ** * *    ** *  * *   * ** *   * ** ** 

consensus_7789#0      CCATGTTTCCCATAATG-GGTGACACACAAAATCAATGAAGCTAAC-CTGGGACTTTTCA 178
consensus_7789#1      TAGAGATGCCCTTTGTGTAACGAAGTGAAGAATCAAAATATGGAATACTTAAACTTATCC 148
                          * * *** *  **    **     * ******   *   **  **   **** ** 

consensus_7789#0      ACTTCTACCGATTCACGAT-CACACATT-GGGCTAATTTCCAATGACAACTCTCTTTCTT 236
consensus_7789#1      ATATTTTGTAATGCTGGACATTTATGTTCAGGATCACTTCCACCAGTGGACCTAATTAGT 208
                      *  * *    ** *  **     *  **  ** * * *****         **  **  *

consensus_7789#0      TATCCCCCTGTCTGAAAAATTCT-TCAATTAAACGTCCAGTCCATTTACGATATAATCGT 295
consensus_7789#1      CTCCTGAATACATACATATCTCGATTAGTCAGACAACTATATTGTCTA--ATTGAATAGT 266
                         *    *   *  * *  **  * * * * **  * *     * **  **  *** **

consensus_7789#0      AATGGCTTAGCTGGATTACTAAGATCAGCACAATGAATCATATTTTGTAATATCTGTATA 355
consensus_7789#1      TTTGTCTCTCTTTGCTT-TCAGTATTGGTA-ATTTAAGATTAGTTTGCA-TGTTT---CA 320
                        ** **    * * **   *  **  * * * * **   ** **** * * * *    *

consensus_7789#0      CGATCAGCATAATTGTCCAAATTCAACATACCGGATCCAGAAACTTTTTTAGTTTCAACC 415
consensus_7789#1      AAATTAACACGATAAT---ATTTCGCCACACAAATTGTTTGAACTTACTTCCTCCAACTC 377
                        ** * **  **  *   * ***  ** **    *     *****  **  *   *  *

consensus_7789#0      ATTGTTCTTAAATCAGCTAATAAACTCATATGCTTAGACATATCTGTTGCTAACACCAAT 475
consensus_7789#1      ATTATCATTAGGCGTTTCAACCCCATGAATTGGTAGGAATGGCCCGTTACCGTCGTCTAC 437
                      *** *  ***        **     * *  ** *  **     * *** *   *  * * 

consensus_7789#0      TCTATAACCATTCTACGTAATGTTTGACGTTTTTTTCCACCTAAATTAGCAAATATATCA 535
consensus_7789#1      ATTTTGACTCGTTAACTTTGAACCGGATGGCAATTTTGTT----GTTAGCAAAC-CGCTA 492
                        * * **   *  ** *       ** *    ***         ********      *

consensus_7789#0      CAGTCTTTTTCACGTTAAAATTTTAAATGCCATATAAAGATGATGGTTTTCCAGAACGGA 595
consensus_7789#1      GAATCATTTA---GTTGAGCGCTTT--TACGAGATTCAGTTGACATACTTCCAGT-TGAT 546
                       * ** ***    *** *    **   * * * **  ** ***     ******   *  

consensus_7789#0      TGCATCATTATATTGTAAGGCTAATTCATGACCAGTATTGATTAGAAATTGATTAGTTAC 655
consensus_7789#1      CCTATTCTTGTTTT-TATAACTGATGAGGAAACTGAA----------------------- 582
                         **  ** * ** **   ** **     * * * *                       

consensus_7789#0      TCCAGGATGATCTACGTCATGTATAGCTGCGGCAAACAAAACAGCTAAAATTTCCAAATC 715
consensus_7789#1      ------------------------------------------------------------
                                                                                  

consensus_7789#0      GCTGAAAACATCGTCCAATGCTTCTGCTTGTAGCAAAAAAATGTGCTGTTTGAAGAACAT 775
consensus_7789#1      ------------------------------------------------------------
                                                                                  

consensus_7789#0      CGGCTGCATGCATTGAGTTATGATAAGGAACATCAGCATGATAAGTTGATTCAACTCTTA 835
consensus_7789#1      ------------------------------------------------------------
                                                                                  

consensus_7789#0      ACAGATAACGTACAAAAACATGAGGATCAATACAAAATGTTTTGAGTAGATCACGTTTCT 895
consensus_7789#1      ------------------------------------------------------------
                                                                                  

consensus_7789#0      GAAATATTCTATAGGCAACTGTTGTAAGAGCATGTCCATTAGAAAGTCGATCAATTTCAA 955
consensus_7789#1      ------------------------------------------------------------
                                                                                  

consensus_7789#0      AGATATCTACACCCCATTCGTCCAAACACAGTGAGAATCTTTCCTCCAACTCATTATCAT 1015
consensus_7789#1      ------------------------------------------------------------
                                                                                  

consensus_7789#0      TAGGCGTTTCAACCCCATGAATTGGTAGGAATGGCCCGTTACCGTCGTCTACATTTTGAC 1075
consensus_7789#1      ------------------------------------------------------------
                                                                                  

consensus_7789#0      TCGTTAACTTTGAACTGGATGGCAATTTTGTTG 1108
consensus_7789#1      ---------------------------------