These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 665 fasta sequence [ATGCGTGGTGGAGCTGTTGCACAAGATGGTCGAATAGAACCTGGAGATATGATACTAGAAGTAAATAGAATCAGCTTCGAAGATATGAGTAATGATGAAGCTGTAAGAGTTTTACGTGAGGAAGTTCAAAAACCT-GGGTAA-TTCACGGTGTACTTACTATTTGTCCAGTTATATATTATTTATTCTTATTTTCTCACCAAACTTCTAAAAGTAAACTTCATTTCAAAAGAATCATAATAAGGCAAATACCACAACAATGAATGATCATCATAGTTTGCTTGTAGGAGTTCAAGTTTTTGCATCATAAACTGATATTTGGTGATTAACCACTTGCTAAGGAAATCATAGGTTATCCACTTTTTGTCAATACATGTTAATTTATATGTGATAACGATAACTACGAGTGCAATTTTTTCTAAATCATATTTTCGCATGACTTTCGCTTTTTTCTGATTGTAGAGACATGCTTTTGTTAGCCTATATATACGGAATTTTACCATTTTATCTGCCTAATCATCACGTTTTCCGGCATTCTCACCTTGTATTCCTTCGTAATCGTGGGTTATTGTTGAAGTATAGTGTATCAGTTGTCTTTCTATCGAATCCGCCATTGAACATATTCGTAGTAGAATAAGCTCTATTTTTTTCCAATTTTAACGATTACC] [+] EMBL CD088363 [ATGCGTGGTGGAGCTGTTGCACAAGATGGTCGAATAGAACCTGGAGATATGATACTAGAAGTAAATAGAATCAGCTTCGAAGATATGAGTAATGATGAAGCTGTAAGAGTTTTACGTGAGGAAGTTCAAAAACCT GGGTAA TTCACGGTGTACTTACTATTTGTCCAGTTATATATTATTTATTCTTATTTTCTCACCAAACTTCTAAAAGTAAACTTCATTTCAAAAGAATCATAATAAGGCAAATACCACAACAATGAATGATCATCATAGTTTGCTTGTAGGAGTTCAAGTTTTTGCATCATAAACTGATATTTGGTGATTAACCACTTGCTAAGGAAATCATAGGTTATCCACTTTTTGTCAATACATGTTAATTTATATGTGATAACGATAACTACGAGTGCAATTTTTTCTAAATCATATTTTCGCATGACTTTCGCTTTTTTCTGATTGTAGAGACATGCTTTTGTTAGCCTATATATACGGAATTTTACCATTTTATCTGCCTAATCATCACGTTTTCCGGCATTCTCACCTTGTATTCCTTCGTAATCGTGGGTTATTGTTGAAGTATAGTGTATCAGTTGTCTTTCTATCGAATCCGCCATTGAACATATTCGTAGTAGAATAAGCTCTATTTTTTTCCAATTTTAACGATTAC ] [-] EMBL CD088333 [ ACCTGGGGTAATTTCACGGTGTACTTACTATTTGTCCAGTTATATATTATTTATTCTTATTTTCTCACCAAACTTCTAAAAGTAAACTTCATTTCAAAAGAATCATAATAAGGCAAATACCACAACAATGAATGATCATCATAGTTTGCTTGTAGGAGTTCAAGTTTTTGCATCATAAACTGATATTTGGTGATTAACCACTTGCTAAGGAAATCATAGGTTATCCACTTTTTGTCAATACATGTTAATTTATATGTGATAACGATAACTACGAGTGCAATTTTTTCTAAATCATATTTTCGCATGACTTTCGCTTTTTTCTGATTGTAGAGACATGCTTTTGTTAGCCTATATATACGGAATTTTACCATTTTATCTGCCTAATCATCACGTTTTCCGGCATTCTCACCTTGTATTCCTTCGTAATCGTGGGTTATTGTTGAAGTATAGTGTATCAGTTGTCTTTCTATCGAATCCGCCATTGAACATATTCGTAGTAGAATAAGCTCTATTTTTTTCCAATTTTAACGATTACC] consensusID : consensus_7801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [TGATTGTGTCTATCTTCACTGGTACGTCTTATTGGAAGAATTCGTCTGTGTCTTCGTTGTCTTCTATGTCTTGGATATTTAGCCGAAGACATAGTTGTACCTGTTGCTGTTGAAAATCTGCTTGATTCGTCTTCTGAATCGAAAAAGCTTGTGGATTCCAGATCTGAACTCATCATAGATGAAGAAGTTTCATAATTTTGAATTCTTTGACCAAGTTTAGCCAAGCGCGAACCATGCTTGTAATTATGAAAATTTTTCAGAGGCGGAACCCGATCACCGCTATATACTGAGTCTGTTTCGACACAAGTATCACATTCCTCAAGACCATGCCCTGTTGTCCCAATGGCATGTTCTTGTTCGCTGGGGATTTCATTTTTTGAGACACGGTGTATATTGTCAGGAGCTTTGTTGAAGTTTGTAGAATTTTTATTTTGACCGNGAAGGTGATTCTCGCCTGTGCCGGNTGAATGGTTATCTGATTTTGTACTGCTATCTGCAGAAACCAGCCATGAAATAACTTTTCCATTTGAACATGGCAGTCTCGCATCATC] [+] EMBL CD095763 [TGATTGTGTCTATCTTCACTGGTACGTCTTATTGGAAGAATTCGTCTGTGTCTTCGTTGTCTTCTATGTCTTGGATATTTAGCCGAAGACATAGTTGTACCTGTTGCTGTTGAAAATCTGCTTGATTCGTCTTCTGAATCGAAAAAGCTTGTGGATTCCAGATCTGAACTCATCATAGATGAAGAAGTTTCATAATTTTGAATTCTTTGACCAAGTTTAGCCAAGCGCGAACCATGCTTGTAATTATGAAAATTTTTCAGAGGCGGAACCCGATCACCGCTATATACTGAGTCTGTTTCGACACAAGTATCACATTCCTCAAGACCATGCCCTGTTGTCCCAATGGCATGTTCTTGTTCGCTGGGGATTTCATTTTTTGAGACACGGTGTATATTGTCAGGAGCTTTGTTGAAGTTTGTAGAATTTTTATTTTGACCGNGAAGGTGATTCTCGCCTGTGCCGGNTGAATGGTTATCTGATTTTGTACTGCTATCTGCAGAAACCAGCCATGAAATAACTTTTCCATTTGAACATGGCAGTCTCGCATCATC] consensusID : consensus_7801#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [GTCAAAATAAAAATTCTACAAACTTCAACAAAGCTCCTGACAATATACACAGTGTCTCAAAAAATGAAATCCCCAGCGAACAAGAACATGCCATTGGGACAACAGGGCATGGTCTTGAGGAATGTGATACTTGTGTCGAAACAGACTCAGTATATAGCGGTGATCGGGTTCCGCCTCTGAAAAATTTTCATAATTACAAGCATGGTTCGCGCTTGGCTAAACTTGGTCAAAGAATTCAAAATTATGAAACTTCTTCATCTATGATGAGTTCAGATCTGGAATCCACAAGCTTTTTCGATTCAGAAGACGAATCAAGCAGATTTTCAACAGCAACAGGTACAACTATGTCTTCGGCTAAATATCCAAGACATAGAAGACAACGAAGACACAGACGGATTCTTCCAATAAGACGTACCAGTGAAGATGCTACTTCTTTTAG] [+] EMBL CD184476 [GTCAAAATAAAAATTCTACAAACTTCAACAAAGCTCCTGACAATATACACAGTGTCTCAAAAAATGAAATCCCCAGCGAACAAGAACATGCCATTGGGACAACAGGGCATGGTCTTGAGGAATGTGATACTTGTGTCGAAACAGACTCAGTATATAGCGGTGATCGGGTTCCGCCTCTGAAAAATTTTCATAATTACAAGCATGGTTCGCGCTTGGCTAAACTTGGTCAAAGAATTCAAAATTATGAAACTTCTTCATCTATGATGAGTTCAGATCTGGAATCCACAAGCTTTTTCGATTCAGAAGACGAATCAAGCAGATTTTCAACAGCAACAGGTACAACTATGTCTTCGGCTAAATATCCAAGACATAGAAGACAACGAAGACACAGACGGATTCTTCCAATAAGACGTACCAGTGAAGATGCTACTTCTTTTAG] consensusID : consensus_7801#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [ACAAGATGGTCGAGTAGAATCTGGAGATATGATACTAGAAGTAAATAGAATCAGCTTCGAAGATATGAGTAATGATGAAGCTGTAAGAGTTTTACGTGAGGAAGTTCAAAAACCTGGTCCTATCACTTTAGTGGTTGCAATAATTACAAGCATGGTTCGCGCTTGGCTAAACTTGGTCAAAGAATTCAAAATTATGAAACTTCTTCATCTATGATGAGTTCAGA] [-] EMBL CD072668 [ACAAGATGGTCGAGTAGAATCTGGAGATATGATACTAGAAGTAAATAGAATCAGCTTCGAAGATATGAGTAATGATGAAGCTGTAAGAGTTTTACGTGAGGAAGTTCAAAAACCTGGTCCTATCACTTTAGTGGTTGCAATAATTACAAGCATGGTTCGCGCTTGGCTAAACTTGGTCAAAGAATTCAAAATTATGAAACTTCTTCATCTATGATGAGTTCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7801#0 ------------------------------------------------------------ consensus_7801#3 ------------------------------------------------------------ consensus_7801#2 -------------------------------------------------------GTCAA 5 consensus_7801#1 TGATTGTGTCTATCTTCACTGGTACGTCTTATTGGAAGAATTCGTCTGTGTCTTCGTTGT 60 consensus_7801#0 ----------ATGCGTGGTGGAGCTGTTGCACAAGATGGTCGAATAGAACCTGGAGATAT 50 consensus_7801#3 ------------------------------ACAAGATGGTCGAGTAGAATCTGGAGATAT 30 consensus_7801#2 AATAAAAATTCTACAAACTTCAACAAAGCTCCTGACAATATACACAGTGTCTCAAAAAAT 65 consensus_7801#1 CTTCTATGTCTTGGATATTTAGCCGAAGACA-TAGTTGTACCTGTTGCTGTTGAAAATCT 119 * * * * * consensus_7801#0 GATA---------CTAGAAGTAAATAGAATCA-GCTTCGAAGATATGAG----TAAT-GA 95 consensus_7801#3 GATA---------CTAGAAGTAAATAGAATCA-GCTTCGAAGATATGAG----TAAT-GA 75 consensus_7801#2 GAAA---------TCCCCAGCGAACAAGAACATGCCATTGGGACAACAGGGCATGGT-CT 115 consensus_7801#1 GCTTGATTCGTCTTCTGAATCGAAAAAGCTTGTGGATTCCAGATCTGAACTCATCATAGA 179 * * ** * * ** * * * consensus_7801#0 TGAAGC--TGTAAGAGTTTTA-----CGTGAGGAAGTTCAAAA----------ACCTGGG 138 consensus_7801#3 TGAAGC--TGTAAGAGTTTTA-----CGTGAGGAAGTTCAAAA----------ACCTGGT 118 consensus_7801#2 TGAGGAA-TGTGATACTTGTG-----TCGAAACAGACTCAGTATATAGCGGTGATCGGGT 169 consensus_7801#1 TGAAGAAGTTTCATAATTTTGAATTCTTTGACCAAGTTTAGCCAAGCGC---GAACCATG 236 *** * * * * * ** * * * * * * * consensus_7801#0 TAATTCACGGT-GTACTTACTATTTGTCCAGTTATATAT--TAT--TTATTCTTATTTTC 193 consensus_7801#3 CCTATCACTTTAGTGGTTGCAATAATTACAAGCATGGTT--CGCGCTTGGCTAAACTTGG 176 consensus_7801#2 TCCGCCTCTGA-AAAATTTTCATAATTACAAGCATGGTT--CGCGCTTGGCTAAACTTGG 226 consensus_7801#1 CTTGTAATTATGAAAATTTTTCAGAGGCGGAACCCGATCACCGCTATATACTGAGTCTGT 296 ** * * consensus_7801#0 T----CACCAAACTTCTAAAAGTAAACTTCATTTCAAAAGAATC--ATAATAAGGCAAAT 247 consensus_7801#3 T----CAAAGAATTCAAAATTATGAAACTTCTTC------ATCT--ATGATGAGTTCAGA 224 consensus_7801#2 T----CAAAGAATTCAAAATTATGAAACTTCTTC------ATCT--ATGATGAGTTCAGA 274 consensus_7801#1 TTCGACACAAGTATCACATTCCTCAAGACCATGCCCTGTTGTCCCAATGGCATGTTCTTG 356 * ** * * * ** * ** * consensus_7801#0 ACCACAA-CAATGAATGATCATCATAGTTTGCTTGTAGGAGTTCAAGTTTTTGCATCATA 306 consensus_7801#3 ------------------------------------------------------------ consensus_7801#2 TCTGGAATCCACAAGCTTTTTCGATTCAGAAGACGAATCAAGCAGATTTTCAACAGCAAC 334 consensus_7801#1 TTCGCTGGGGATTTCATTTTTTGAGACACGGTGTATATTGTCAGGAGCTTTGTTGAAGTT 416 consensus_7801#0 AACTGATATTTGGTGATTAACCACTTG-----CTAAGGAAATCATAGGTTATCCACTTTT 361 consensus_7801#3 ------------------------------------------------------------ consensus_7801#2 AGGTACAACTATGTCTTCGGCTAAATA-----TCCAAGACATAGAAGACAACGAAGACAC 389 consensus_7801#1 TGTAGAATTTTTATTTTGACCGNGAAGGTGATTCTCGCCTGTGCCGGNTGAATGGTTATC 476 consensus_7801#0 TGTCAATACATGTTAATTTATATGTGATAACGATAACTACGAGTGCAATTTTTTCTAAAT 421 consensus_7801#3 ------------------------------------------------------------ consensus_7801#2 AGACGG-ATTCTTCCAATAAGACGTACCAGTGAAGATGCTACTTCTTTTAG--------- 439 consensus_7801#1 TGATTTTGTACTGCTATCTGCAGAAACCAGCCATGAAATAACTTTTCCATTTGAACATGG 536 consensus_7801#0 CATATTTTCGCATGACTTTCGCTTTTTTCTGATTGTAGAGACATGCTTTTGTTAGCCTAT 481 consensus_7801#3 ------------------------------------------------------------ consensus_7801#2 ------------------------------------------------------------ consensus_7801#1 CAGTCTCGCATCATC--------------------------------------------- 551 consensus_7801#0 ATATACGGAATTTTACCATTTTATCTGCCTAATCATCACGTTTTCCGGCATTCTCACCTT 541 consensus_7801#3 ------------------------------------------------------------ consensus_7801#2 ------------------------------------------------------------ consensus_7801#1 ------------------------------------------------------------ consensus_7801#0 GTATTCCTTCGTAATCGTGGGTTATTGTTGAAGTATAGTGTATCAGTTGTCTTTCTATCG 601 consensus_7801#3 ------------------------------------------------------------ consensus_7801#2 ------------------------------------------------------------ consensus_7801#1 ------------------------------------------------------------ consensus_7801#0 AATCCGCCATTGAACATATTCGTAGTAGAATAAGCTCTATTTTTTTCCAATTTTAACGAT 661 consensus_7801#3 ------------------------------------------------------------ consensus_7801#2 ------------------------------------------------------------ consensus_7801#1 ------------------------------------------------------------ consensus_7801#0 TACC 665 consensus_7801#3 ---- consensus_7801#2 ---- consensus_7801#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||