These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7825#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 477 fasta sequence [TGGTATGATTTTTAATGTTTCTAAGTCCTGTAGACTCAGTCGGAACGACAAAAGAAGGGTATGAATCTCTAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAGGTTGGATCTTGTTTGTAAGGAATGTACAGGAAGAAGCTACGGAAGAAGACATTCGAGATAAATTCTGTGAATACGGCGATATCAAAAATATACACCTTAACCTTGATCGGCGAACTGGTTATTTAAAAGGATATGCATTAGTAGAATATGAAAATTTCAAGGAAGCATTTACTGCTATGGAACATCTAAATGGTTCTGAGCTAAATGGTCAAAGAATTCTTGTAGATTGGGCGTTTACGAAAGGTCCAAATCCAATCAAGATGTCAACCAAACACAGAACACGTGAACGTAGTAGAAGTCGGTCAGTTGACCGTGCTCGACGATAATTGTACTCATCCTCTAGATGAAATATGTTTT] [+] EMBL CD078327 [TGGTATGATTTTTAATGTTTCTAAGTCCTGTAGACTCAGTCGGAACGACAAAAGAAGGGTATGAATCTCTAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAGGTTGGATCTTGTTTGTAAGGAATGTACAGGAAGAAGCTACGGAAGAAGACATTCGAGATAAATTCTGTGAATACGGCGATATCAAAAATATACACCTTAACCTTGATCGGCGAACTGGTTATTTAAAAGGATATGCATTAGTAGAATATGAAAATTTCAAGGAAGCATTTACTGCTATGGAACATCTAAATGGTTCTGAGCTAAATGGTCAAAGAATTCTTGTAGATTGGGCGTTTACGAAAGGTCCAAATCCAATCAAGATGTCAACCAACCACAGAACACGTGAACGTACTACACGCCGCTCAGTTGACCGCGCTCGACAATAATTGCACTCATCCTCTAAATGAAACATcgctt] [+] EMBL CD078247 [TGGTATGATTTTTAATGTTTCTAAGTCCTGTAGACTCAGTCGGAACGACAAAAGAAGGGTATGAATCTCTAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAGGTTGGATCTTGTTTGTAAGGAATGTACAGGAAGAAGCTACGGAAGAAGACATTCGAGATAAATTCTGTGAATACGGCGATATCAAAAATATACACCTTAACCTTGATCGGCGAACTGGTTATTTAAAAGGATATGCATTAGTAGAATATGAAAATTTCAAGGAAGCATTTACTGCTATGGAACATCTAAATGGTTCTGAGCTAAATGGTCAAAGAATTCTTGTAGATTGGGCGTTTACGAAAGGTCCAAATCCAATCAAGATGTCAACCAAACACAGAACACGTGAACGTAGTAAAAGTCGGTCAGTTGACCGTGCTCGACGATAATTGTACTCATCCTCTAGATGAAATATGTTT ] [-] EMBL CD072885 [ TTAATGTTTCTAAGTCCTGTAGACTCAGTCGGAACGACAAAAGAAGGGTATGAATCTCTAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAGGTTGGATCTTGTTTGTAAGGAATGTACAGGAAGAAGCTACGGAAGAAGACATTCGAGATAAATTCTGTGAATACGGCGATATCAAAAATATACACCTTAACCTTGATCGGCGAACTGGTTATTTAAAAGGATATGCATTAGTAGAATATGAAAATTTCAAGGAAGCATTTACTGCTATGGAACATCTAAATGGTTCTGAGCTAAATGGTCAAAGAATTCTTGTAGATTGGGCGTTTACGAAAGGTCCAAATCCAATCAAGATGTCAACCAAACACAGAACACGTGAACGTAGTAGAAGTCGGTCAGTTGACCGTGCTCGACGATAATTGTACTCATCCTCTAGATGAAATATGTTT ] [+] EMBL CD137822 [ tGACTCAGTCGGAACGACAAAAGAAGGGTATGAATCTCTAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAGGTTGGATCTTGTTTGTAAGGAATGTACAGGAAGAAGCTACGGAAGAAGACATTCGAGATAAATTCTGTGAATACGGCGATATCAAAAATATACACCTTAACCTTGATCGGCGAACTGGTTATTTAAAAGGATATGCATTAGTAGAATATGAAAATTTCAAGGAAGCATTTACTGCTATGGAACATCTAAATGGTTCTGAGCTAAATGGTCAAAGAATTCTTGTAGATTGGGCGTTTACGAAAGGTCCAAATCCAATCAAGATGTCAACCAAACACAGAACACGTGAACGTAGTAGAAGTCGGTCAGTTGACCGTGCTCGACGATAATTGTACT ] consensusID : consensus_7825#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [ACTGACCATTTGTTATCTATTAGGATGGCTGATGTATTGGATTTACATGGAGAGAATGACTTTGAAGAAGATGCAGATGGCGATCATGGTTTAATGAAATTGAAGGAAAGTGCAAAAAAAGAAAAGGCAGAGGATTCGGAGCTGACTCAGTCGGAACGACAAAAGAAGGGTATGAATCTCTAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAGGTTGGATCTTGTTTGTAAGGAATG] [-] EMBL CD190902 [ACTGACCATTTGTTATCTATTAGGATGGCTGATGTATTGGATTTACATGGAGAGAATGACTTTGAAGAAGATGCAGATGGCGATCATGGTTTAATGAAATTGAAGGAAAGTGCAAAAAAAGAAAAGGCAGAGGATTCGGAGCTGACTCAGTCGGAACGACAAAAGAAGGGTATGAATCTCTAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAGGTTGGATCTTGTTTGTAAGGAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7825#0 TGGTATGATTTTTAATGTTTCTAAGTCCTGTAGACTCAGTCGGAACGACAAAAGAAGGGT 60 consensus_7825#1 ------------------------------------------------------------ consensus_7825#0 ATGAATCTCTAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAG 120 consensus_7825#1 -----------------ACTGACCATTTGTTAT--------CTATTAGGATGGCTGATGT 35 **** ** ** * * * *** * consensus_7825#0 GTTGGATCTTGTTTGTAAGGAATGTACAGGAAGAAGCTACGGAAGAAGACATTCGA--GA 178 consensus_7825#1 ATTGGAT-TTACATGGAGAGAATGACTTTGAAGAAGATGCAGATGGCGATCATGGTTTAA 94 ****** ** ** * ***** ******* * * ** * ** * * * consensus_7825#0 TAAATTCTGTGAATACGGCGATATCAAAAATATACACCTTAACCTTGATCGGCGAACTGG 238 consensus_7825#1 TGAAATTGAAGGAAAGTGCAA----AAAAAGAAAAGGCAGAG----GATTCG-GAGCTG- 144 * ** * * * * ** * ***** * * * * *** * ** *** consensus_7825#0 TTATTTAAAAGGATATGCATTAGTAGAATATGAAAATTTCAAGGAAGCATTTACTGCTAT 298 consensus_7825#1 --ACTCAGTCGGAACGACAAAAGAAGGGTATGA--ATCTCTAGTAGTAGATGACGGTTCG 200 * * * *** ** ** ** ***** ** ** ** * * ** * * consensus_7825#0 GGAACATCTAAATGGTTCTGAGCTAAATGGTCAAAGAATTCTTGTAGATTGGGCGTTTAC 358 consensus_7825#1 TCAAAATCAGGAC--CTCAAAGATCCGTAGAAGGTTGGATCTTGTTTGTAAGGAATG--- 255 ** *** * ** ** * * * ****** * ** * consensus_7825#0 GAAAGGTCCAAATCCAATCAAGATGTCAACCAAACACAGAACACGTGAACGTAGTAGAAG 418 consensus_7825#1 ------------------------------------------------------------ consensus_7825#0 TCGGTCAGTTGACCGTGCTCGACGATAATTGTACTCATCCTCTAGATGAAATATGTTTT 477 consensus_7825#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||