These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [TGCAAAAGTCCGACTGAATCAAGTGTTTGAATTATTGATCGAACACCGGAGCGACCGAATTCATTAGCATTCAAGTCTAGTAATTCTAAATGGGATTTATTGCCCAGCGATAGAATTAAATTAATTCCAGCAGACAGTTTGATTTCGTTTCCGGTTAGATTTAAAACTCTTAAATTAGGAGTGGTGTCGGGATCTTCAAAAGCGGAAGCAAGTGCCTTTACACCAGTTGATCGGAGTATACAATCACTCAAGTAAAGTTCCTCTAGATTGACTACTGAAGGTAAGGCACGTGCAATTGCTTCGCCACCACGTGGAGTAAGTGAATTATCCGACAAATTTAACACTCGTAAATTCGGACGTCTATCCCATGAATTCCAATCCCATTTTGATAAAGGGAAAGCTCTTCTAAGGACCCCATATCACAGAAAACCTTAGAAAGCATTTGAGCTCCAACATTTTCTAAACGATTTCTTCCTCCCGAAAATATTTTTAGGAGTAGTCCTTGATTCTTTGACAAACATCTTCCTTCTTCTAAGGCCTCTGNCAGATATCGACATCCTTCATGGCCAAGA] [+] EMBL CD160964 [TGCAAAAGTCCGACTGAATCAAGTGTTTGAATTATTGATCGAACACCGGAGCGACCGAATTCATTAGCATTCAAGTCTAGTAATTCTAAATGGGATTTATTGCCCAGCGATAGAATTAAATTAATTCCAGCAGACAGTTTGATTTCGTTTCCGGTTAGATTTAAAACTCTTAAATTAGGAGTGGTGTCGGGATCTTCAAAAGCGGAAGCAAGTGCCTTTACACCAGTTGATCGGAGTATACAATCACTCAAGTAAAGTTCCTCTAGATTGACTACTGAAGGTAAGGCACGTGCAATTGCTTCGCCACCACGTGGAGTAAGTGAATTATCCGACAAATTTAACACTCGTAAATTCGGACGTCTATCCCATGAATTCCAATCCCATTTTGATAAAGGGAAAGCTCTTCTAAGGACCCCATATCACAGAAAACCTTAGAAAGCATTTGAGCTCCAACATTTTCTAAACGATTTCTTCCTCCCGAAAATATTTTTAGGAGTAGTCCTTGATTCTTTGACAAACATCTTCCTTCTTCTAAGGCCTCTGNCAGATATCGACATCCTTCATGGCCAAGA] consensusID : consensus_7831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 560 fasta sequence [TTAAATTTATTCCAGCAGACAGTTTGATTTCGTTTCCGGTTAGATTTAAAACTCTTAAATTAGGAGTGGTGTCGGGATCTTCAAAAGCGGAAGCAAGTGCCTTTACACCAGTTGATCGGAGTATACAATCACTCAAATAAAGTTCCTCTAGATTGACTACTGAAGGTAAGGCACGTGCAATTGCTTCGCCACCACGTGGAGTAAGTGAATTATCCGACAAATTTAACACTCGTAAATTCGGACTAGATTTAATTATTTTCACCAGTGACAAAATACCGTCTATCCCATGAATTCCAATCCCATTTTGATAAAGGGAAAGCTCTTCTAAGGACCCCATATCACAGAAAACCTTAGAAAGCATTTGAGCTCCAACATTTTCTAAACGATTTCTTCCTCCCGAAAATATTTTTAGGAGTAGTCCTTGATTCTTTGACAAACATCTTCCTTCTTCTAAGGCCTCTGCAAGATATCGACATCCTTCATGGCCAAGACCTTGGTTGTTCATTCGCAGTATCTCAAGAGTGTGACAAGTATTGCTCGCCAGCAAATCAGTTATACCA] [-] EMBL AI975447 [TTAAATTTATTCCAGCAGACAGTTTGATTTCGTTTCCGGTTAGATTTAAAACTCTTAAATTAGGAGTGGTGTCGGGATCTTCAAAAGCGGAAGCAAGTGCCTTTACACCAGTTGATCGGAGTATACAATCACTCAAATAAAGTTCCTCTAGATTGACTACTGAAGGTAAGGCACGTGCAATTGCTTCGCCACCACGTGGAGTAAGTGAATTATCCGACAAATTTAACACTCGTAAATTCGGACTAGATTTAATTATTTTCACCAGTGACAAAATACCGTCTATCCCATGAATTCCAATCCCATTTTGATAAAGGGAAAGCTCTTCTAAGGACCCCATATCACAGAAAACCTTAGAAAGCATTTGAGCTCCAACATTTTCTAAACGATTTCTTCCTCCCGAAAATATTTTTAGGAGTAGTCCTTGATTCTTTGACAAACATCTTCCTTCTTCTAAGGCCTCTGCAAGATATCGACATCCTTCATGGCCAAGACCTTGGTTGTTCATTCGCAGTATCTCAAGAGTGTGACAAGTATTGCTCGCCAGCAAATCAGTTATACCA] [-] EMBL AI975453 [ TCGTTTCCGGTTAGATTTAAAACTCTTAAATTAGGAGTGGTGTCGGGATCTTCAAAAGCGGAAGCAAGTGCCTTTACACCAGTTGATCGGAGTATACAATCACTCAAATAAAGTTCCTCTAGATTGACTACTGAAGGTAAGGCACGTGCAATTGCTTCGCCACCACGTGGAGTAAGTGAATTATCCGACAAATTTAACACTCGTAAATTCGGACTAGATTTAATTATTTTCACCAGTGACAAAATACCGTCTATCCCATGAATTCCAATCCCATTTTGATAAAGGGAAAGCTCTTCTAAGGACCCCATATCACAGAAAACCTTAGAAAGCATTTGAGCTCCAACATTTTCTAAACGATTTCTTCCTCCCGAAAATATTTTTAGGAGTAGTCCTTGATTCTTTGACAAACATCTTCCTTCTTCTAAGGCCTCTGCAAGATATCGACATCCTTCATGGCCAAGACCTTGGTTGTTCATTCGCAGTATCTCAAGAGTGTGACAAGTATTGCTCGCCAGCAAATCAGTTATACCA] [-] EMBL AI975448 [ TACAATCACTCAAATAAAGTTCCTCTAGATTGACTACTGAAGGTAGAGCACGTGCAATTGCTTCGCCACCACGTGGAGTAAGTGAATTATCTGACAAATTTAACACTCGTAAATTCGGACTAGATTTAATTATTTTCACCAGTGACAAAATACCGTCTATCCCATGAATTCCAATCCCGTTTTGATAAAGGTAAAGCTCTTCTAAGGA ] [-] EMBL CD115647 [ AGTGAATTATCCGACAAATTTAACACTCGTAAATTCGGACTAGATTTAATTATTTTCACCAGTGACAAAATACCGTNTATCCCATGAATTCCAATCCCATTTTGCACCCGCCAAAGATTTTTTAAGGACCCCATATAACAGAAAACCTTAGAAAGCATTTGAGCTCCAACATTTTCTAAACGATTTCTTCCTCCCGAAAATATTTTTAGGAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7831#0 TGCAAAAGTCCGACTGAATCAAGTGTTTGAATTATTGATCGAACACCGGAGCGACCGAAT 60 consensus_7831#1 ------------------------------------------------------------ consensus_7831#0 TCATTAGCATTCAAGTCTAGTAATTCTAAATGGGATTTATTGCCCAGCGATAGAATTAAA 120 consensus_7831#1 -------------------------------------------------------TTAAA 5 ***** consensus_7831#0 TTAATTCCAGCAGACAGTTTGATTTCGTTTCCGGTTAGATTTAAAACTCTTAAATTAGGA 180 consensus_7831#1 TTTATTCCAGCAGACAGTTTGATTTCGTTTCCGGTTAGATTTAAAACTCTTAAATTAGGA 65 ** ********************************************************* consensus_7831#0 GTGGTGTCGGGATCTTCAAAAGCGGAAGCAAGTGCCTTTACACCAGTTGATCGGAGTATA 240 consensus_7831#1 GTGGTGTCGGGATCTTCAAAAGCGGAAGCAAGTGCCTTTACACCAGTTGATCGGAGTATA 125 ************************************************************ consensus_7831#0 CAATCACTCAAGTAAAGTTCCTCTAGATTGACTACTGAAGGTAAGGCACGTGCAATTGCT 300 consensus_7831#1 CAATCACTCAAATAAAGTTCCTCTAGATTGACTACTGAAGGTAAGGCACGTGCAATTGCT 185 *********** ************************************************ consensus_7831#0 TCGCCACCACGTGGAGTAAGTGAATTATCCGACAAATTTAACACTCGTAAATTCGGAC-- 358 consensus_7831#1 TCGCCACCACGTGGAGTAAGTGAATTATCCGACAAATTTAACACTCGTAAATTCGGACTA 245 ********************************************************** consensus_7831#0 --------------------------------GTCTATCCCATGAATTCCAATCCCATTT 386 consensus_7831#1 GATTTAATTATTTTCACCAGTGACAAAATACCGTCTATCCCATGAATTCCAATCCCATTT 305 **************************** consensus_7831#0 TGATAAAGGGAAAGCTCTTCTAAGGACCCCATATCACAGAAAACCTTAGAAAGCATTTGA 446 consensus_7831#1 TGATAAAGGGAAAGCTCTTCTAAGGACCCCATATCACAGAAAACCTTAGAAAGCATTTGA 365 ************************************************************ consensus_7831#0 GCTCCAACATTTTCTAAACGATTTCTTCCTCCCGAAAATATTTTTAGGAGTAGTCCTTGA 506 consensus_7831#1 GCTCCAACATTTTCTAAACGATTTCTTCCTCCCGAAAATATTTTTAGGAGTAGTCCTTGA 425 ************************************************************ consensus_7831#0 TTCTTTGACAAACATCTTCCTTCTTCTAAGGCCTCTGNCAGATATCGACATCCTTCATGG 566 consensus_7831#1 TTCTTTGACAAACATCTTCCTTCTTCTAAGGCCTCTGCAAGATATCGACATCCTTCATGG 485 ************************************* ********************* consensus_7831#0 CCAAGA------------------------------------------------------ 572 consensus_7831#1 CCAAGACCTTGGTTGTTCATTCGCAGTATCTCAAGAGTGTGACAAGTATTGCTCGCCAGC 545 ****** consensus_7831#0 --------------- consensus_7831#1 AAATCAGTTATACCA 560 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||