These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 827 fasta sequence [GTGTTTTGTGTGTACACTTGAAAAAGAAAAAAATGAGTAAAAATAAAGTTCGCCAACATTATAGTCGTCGTAAAAAGTACAAAGAAGTAGTTCAATCGCGTGTAAACAGTAAAACTCCTGTTCAATATACTCGTCGGTTAAAAAC-AAAAAAGCATAAAAAATTAAAAAATATTGGCGCGAATAATTCAAATTTAGGTATGTTCTACTTTTTTTCTTAGTATTTCGTTACAATCTTGCTAATTGTCTATTAATCAGAAATATACAATCGTCCACCTAAAGCAAATGATGAAGATTATGTTCCAGCAAGCTTTAAACAAATGTTACTTATGAAAGAGGGTAAATGGAAACCTTTACTTGATCCAGCTGTTGGAGATACTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAACAAGGTAAACATGAATCAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATGAATTGAGTAAAGTGGAATTCTCCAAGAAACAACGAACTGAACTTGTTCCTATTACAGAAGTTAAACCAAGCAAAAAGAAACGTAAAGCTATAAAACGTTTAAATGATAAAAGAAAAGAAAAACGTTTACATGCTGTTGAAAAACGATTGACAGGTTTTGAACACNTTAC-AGATAAAGTGAAATTCAATGAAGTCGTTATGGCGCCTCCCGTACATTTGACTAAACCTAAAATGGTATTTAAGAAAAAATTAGATCAAGTACACAGTTTAGACAAATTGTTAACAACGTAAATACAACTTCATCCTTTGTACATCTATACTAATTCCTATTAAATAAATAAAGAGAAT] [-] EMBL CD123848 [GTGTTTTGTGTGTACACTTGAAAAAGAAAAAAATGAGTAAAAATAAAGTTCGCCAACATTATAGTCGTCGTAAAAAGTACAAAGAAGTAGTTCAATCGCGTGTAAACAGTAAAACTCCTGTTCAATATACTCGTCGGTTAGAAACAAAAAAAGCATAAAAAATTAAAAAATATTGGCGCGAATAATTCAAATTTAGa ] [+] EMBL CD078271 [ AAACAGTAAAACTCCTGTTCAATATACTCGTCGGTTAAAAAC AAAAAAGCATAAAAAATTAAAAAATATTGGCGCGAATAATTCAAATTTAGGTATGTTCTACTTTTTTTCTTAGTATTTCGTTACAATCTTGCTAATTGTCTATTAATCAGAAATATACAATCGTCCACCTAAAGCAAATGATGAAGATTATGTTCCAGCAAGCTTTAAACAAATGTTACTTATGAAAGAGGGTAAATGGAAACCTTTACTTGATCCAGCTGTTGGAGATACTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAACAAGGTAAACATGAATCAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATGAATTGAGTAAAGTGGAATTCTCCAAGAAACAACGAACTGAACTTGTTCCTATTACAGAAGTTAAACCAAGCAAAAAGAAACGTAAAGCTATAAAACGTTTAAATGATAAAAGAAAAGAAAAACGTTTACATGCTGTTGAAAAACGATTGACAGGTTTTGAACACNTTAC AGATAAAGTGAAATTCAATGAAGTCGTTATGGCGCCTCCCGTACATTTGACTAAACCTAAAATGGTATTTAAGAAAAAA ] [+] EMBL CD078355 [ AAACAGTAAAACTCCTGTTCAATATACTCGTCGGTTAAAAAC AAAAAAGCATAAAAAATTAAAAAATATTGGCGCGAATAATTCAAATTTAGGTATGTTCTACTTTTTTTCTTAGTATTTCGTTACAATCTTGCTAATTGTCTATTAATCAGAAATATACAATCGTCCACCTAAAGCAAATGATGAAGATTATGTTCCAGCAAGCTTTAAACAAATGTTACTTATGAAAGAGGGTAAATGGAAACCTTTACTTGATCCAGCTGTTGGAGATACTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAACAAGGTAAACATGAATCAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATGAATTGAGTAAAGTGGAATTCTCCAAGAAACAACGAACTGAACTTGTTCCTATTACAGAAGTTAAACCAAGCAAAAAGAAACGTANAGCTATAAAACGTTTAAATGATAAAAGAAAAGAAAAACGTTTACATGCTGCTGAA ] [-] EMBL CD072915 [ GATCCAGCTGTTGGAGATACTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAACAAGGTAAACATGAATCAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATGAATTGAGTAAAGTGGAATTCTCCAAGAAACAACGAACTGAACTTGTTCCTATTACAGAAGTTAAACCAAGCAAAAAGAAACGTAAAGCTATAAAACGTTTAAATGATAAAAGAAAAGAAAAACGTTTACATGCTGTTGAAAAACGATTGACAGGTTTTGAACAC TTACAAGATAAAGTGAAATTCAATGAAGTCGTTATGGCGCCTCCCGTACATTTGACTAAACCTAAAATGGTATTTAAGAAAAAATTAGATCAAGTACACAGTTTAGACAAATTGTTAACAACGTAAATACAACTTCATCCTTTGTACATCTATACTAATTCCTATTAAATAAATAAAGAGAAT] consensusID : consensus_7837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [AACTTGAAAAAGAAAAAAATGAGTAAAATAAAGTTCGCCAACATTCTAGTCGTCGTAAAAAGTACAAAGAAGTAGTTCAATCGCGTGTAAACAGTAAAACTCCTGTTCAATATACTCGTCGGTTAAAAACAAAAAAGCATAAAAAATTAAAAAATATTGGCGCGAATAATTCAAATTTAGAAATATACAATCGTCCACCTAAAGCAAATGATGAAGATTATGTTCCAGCAAGCTTTAAACAAATGTTACTTATGAAAGAGGGTAAATGGAAACCTTTACTTGATCCAGCTGTTGGAGATACTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAACAAGGTAAACATGAATCAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATGAATTGAGTAAAGTGGAATTCTCCNAGAAACAACGAACTGA] [+] EMBL CD084423 [AACTTGAAAAAGAAAAAAATGAGTAAAATAAAGTTCGCCAACATTCTAGTCGTCGTAAAAAGTACAAAGAAGTAGTTCAATCGCGTGTAAACAGTAAAACTCCTGTTCAATATACTCGTCGGTTAAAAACAAAAAAGCATAAAAAATTAAAAAATATTGGCGCGAATAATTCAAATTTAGAAATATACAATCGTCCACCTAAAGCAAATGATGAAGATTATGTTCCAGCAAGCTTTAAACAAATGTTACTTATGAAAGAGGGTAAATGGAAACCTTTACTTGATCCAGCTGTTGGAGATACTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAACAAGGTAAACATGAATCAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATGAATTGAGTAAAGTGGAATTCTCCNAGAAACAACGAACTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7837#0 GTGTTTTGTGTGTACACTTGAAAAAGAAAAAAATGAGTAAAAATAAAGTTCGCCAACATT 60 consensus_7837#1 --------------AACTTGAAAAAGAAAAAAATGAGTAAAA-TAAAGTTCGCCAACATT 45 *************************** ***************** consensus_7837#0 ATAGTCGTCGTAAAAAGTACAAAGAAGTAGTTCAATCGCGTGTAAACAGTAAAACTCCTG 120 consensus_7837#1 CTAGTCGTCGTAAAAAGTACAAAGAAGTAGTTCAATCGCGTGTAAACAGTAAAACTCCTG 105 *********************************************************** consensus_7837#0 TTCAATATACTCGTCGGTTAAAAACAAAAAAGCATAAAAAATTAAAAAATATTGGCGCGA 180 consensus_7837#1 TTCAATATACTCGTCGGTTAAAAACAAAAAAGCATAAAAAATTAAAAAATATTGGCGCGA 165 ************************************************************ consensus_7837#0 ATAATTCAAATTTAGGTATGTTCTACTTTTTTTCTTAGTATTTCGTTACAATCTTGCTAA 240 consensus_7837#1 ATAATTCAAATTTAG--------------------------------------------- 180 *************** consensus_7837#0 TTGTCTATTAATCAGAAATATACAATCGTCCACCTAAAGCAAATGATGAAGATTATGTTC 300 consensus_7837#1 ---------------AAATATACAATCGTCCACCTAAAGCAAATGATGAAGATTATGTTC 225 ********************************************* consensus_7837#0 CAGCAAGCTTTAAACAAATGTTACTTATGAAAGAGGGTAAATGGAAACCTTTACTTGATC 360 consensus_7837#1 CAGCAAGCTTTAAACAAATGTTACTTATGAAAGAGGGTAAATGGAAACCTTTACTTGATC 285 ************************************************************ consensus_7837#0 CAGCTGTTGGAGATACTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAAC 420 consensus_7837#1 CAGCTGTTGGAGATACTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAAC 345 ************************************************************ consensus_7837#0 AAGGTAAACATGAATCAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATG 480 consensus_7837#1 AAGGTAAACATGAATCAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATG 405 ************************************************************ consensus_7837#0 AATTGAGTAAAGTGGAATTCTCCAAGAAACAACGAACTGAACTTGTTCCTATTACAGAAG 540 consensus_7837#1 AATTGAGTAAAGTGGAATTCTCCNAGAAACAACGAACTGA-------------------- 445 *********************** **************** consensus_7837#0 TTAAACCAAGCAAAAAGAAACGTAAAGCTATAAAACGTTTAAATGATAAAAGAAAAGAAA 600 consensus_7837#1 ------------------------------------------------------------ consensus_7837#0 AACGTTTACATGCTGTTGAAAAACGATTGACAGGTTTTGAACACNTTACAGATAAAGTGA 660 consensus_7837#1 ------------------------------------------------------------ consensus_7837#0 AATTCAATGAAGTCGTTATGGCGCCTCCCGTACATTTGACTAAACCTAAAATGGTATTTA 720 consensus_7837#1 ------------------------------------------------------------ consensus_7837#0 AGAAAAAATTAGATCAAGTACACAGTTTAGACAAATTGTTAACAACGTAAATACAACTTC 780 consensus_7837#1 ------------------------------------------------------------ consensus_7837#0 ATCCTTTGTACATCTATACTAATTCCTATTAAATAAATAAAGAGAAT 827 consensus_7837#1 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||