cluster # 7839

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Schistosoma mansoni
cluster # 7839 cluster # 7839 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7839#0 length = 991 sequences # 2

consensus_7839#1 length = 436 sequences # 2
consensus_7839#2 length = 360 sequences # 1

consensusID : consensus_7839#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 991
fasta sequence

                              [ANAATTTGGCACGAGGAACATTGTATCATTTAATGAACTATTCAAAATGAATCGCACCGAGAGATGACGCTAGAAAATTAATGGATCCTAATAATTTAGTTGAATTAGCACACTACGTTGAAAGTGCCAATAGTTTTGTTAGTGCAAATGCATGTTCTCAACTCCGATTAATTGTTGAACAGATGNNNNNNNNNNNNNNNNNNNNNNNNGCTATCATACAAAACGCCCATAGAGATACTTTGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTGTATGAAAAGCCAGACGCTAGCCAGTATTTTAGTCTACTTTCATAAATATATTGGAGCTTATAAACTTCTCTCTGATATATCTTGGATTTCTGAAGACGATCTTGATAACTACGAATCTAATCTCACAGCAGCACTCCAAATTATGGATAAAAACCAGATAATGCTAGATGTAAAACACATGACATAGTNNNNNNNNNNNNNNNNNGCTATATGTATTCCTCACATCAAAATAAGAAGTCTTTGTTACCTACATTTCTTTAATTCANACAGGTTACAATACTATAAAACAGAAGTTCTATTTATCAGTAATTGTACAGTTNTTTAAAACGTTCTTTACCTATTCATCTGACTTTTTGGGTTCATCTTGATGTTTAACGTCTCCACTTTATTTCCCTCTCAATTTATTTGGTTCTTTATTACAATGCTTCCAATATATACTGCCTTTTGGCGCAAAATCCTCGCTTTGTTATTTGCTCAACCGATTTTTCCCTTTTTATTCATATTTTCTGTGCCCAAAATTTGTTATTATTCCTGCCCCAACAACTGCTTCCACTAATGTGGTACTCATCCTGGTAATTTTATCTTTCTTTCCTAATGTACCTTGACAACAACCCGTTTTACATTTGTGCCGGGTTTATGTTGAATACGACTGACCCCCTCTATGATTAAAAAATGTTTGGTAAAATACATGATTT]

[+] EMBL CD080987             [ANAATTTGGCACGAGGAACATTGTATCATTTAATGAACTATTCAAAATGAATCGCACCGAGAGATGACGCTAGAAAATTAATGGATCCTAATAATTTAGTTGAATTAGCACACTACGTTGAAAGTGCCAATAGTTTTGTTAGTGCAAATGCATGTTCTCAACTCCGATTAATTGTTGAACAGATGNNNNNNNNNNNNNNNNNNNNNNNNGCTATCATACAAAACGCCCATAGAGATACTTTGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTGTATGAAAAGCCAGACGCTAGCCAGTATTTTAGTCTACTTTCATAAATATATTGGAGCTTATAAACTTCTCTCTGATATATCTTGGATTTCTGAAGACGATCTTGATAACTACGAATCTAATCTCACAGCAGCACTCCAAATTATGGATAAAAACCAGATAATGCTAGATGTAAAACACATGACATAGTNNNNNNNNNNNNNNNNNGCTATATGTATTCCTCACATCAAAATAAGAAGTCTTTGTTACCTACATTTCTTTAATTCANACAGGTTACAATACTATAAAACAGAAGTTCTATTTATCAGTAATTGTACAGTTNTTTAAAACGTTCTTTACCTA                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD074813             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTCACATCAAAATAAGAAGTCTTTGTTACCTACATTTCTTTAATTCAAACAGGTTTCAATACTATAAAACAGAAGTTTTATTTATCAGTAATTGTACAGTTTTTTAAAACGTTCTTTACCTATTCATCTGACTTTTTGGGTTCATCTTGATGTTTAACGTCTCCACTTTATTTCCCTCTCAATTTATTTGGTTCTTTATTACAATGCTTCCAATATATACTGCCTTTTGGCGCAAAATCCTCGCTTTGTTATTTGCTCAACCGATTTTTCCCTTTTTATTCATATTTTCTGTGCCCAAAATTTGTTATTATTCCTGCCCCAACAACTGCTTCCACTAATGTGGTACTCATCCTGGTAATTTTATCTTTCTTTCCTAATGTACCTTGACAACAACCCGTTTTACATTTGTGCCGGGTTTATGTTGAATACGACTGACCCCCTCTATGATTAAAAAATGTTTGGTAAAATACATGATTT]




>consensus_7839#0
ANAATTTGGCACGAGGAACATTGTATCATTTAATGAACTATTCAAAATGAATCGCACCGA
GAGATGACGCTAGAAAATTAATGGATCCTAATAATTTAGTTGAATTAGCACACTACGTTG
AAAGTGCCAATAGTTTTGTTAGTGCAAATGCATGTTCTCAACTCCGATTAATTGTTGAAC
AGATGNNNNNNNNNNNNNNNNNNNNNNNNGCTATCATACAAAACGCCCATAGAGATACTT
TGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTGTATG
AAAAGCCAGACGCTAGCCAGTATTTTAGTCTACTTTCATAAATATATTGGAGCTTATAAA
CTTCTCTCTGATATATCTTGGATTTCTGAAGACGATCTTGATAACTACGAATCTAATCTC
ACAGCAGCACTCCAAATTATGGATAAAAACCAGATAATGCTAGATGTAAAACACATGACA
TAGTNNNNNNNNNNNNNNNNNGCTATATGTATTCCTCACATCAAAATAAGAAGTCTTTGT
TACCTACATTTCTTTAATTCANACAGGTTACAATACTATAAAACAGAAGTTCTATTTATC
AGTAATTGTACAGTTNTTTAAAACGTTCTTTACCTATTCATCTGACTTTTTGGGTTCATC
TTGATGTTTAACGTCTCCACTTTATTTCCCTCTCAATTTATTTGGTTCTTTATTACAATG
CTTCCAATATATACTGCCTTTTGGCGCAAAATCCTCGCTTTGTTATTTGCTCAACCGATT
TTTCCCTTTTTATTCATATTTTCTGTGCCCAAAATTTGTTATTATTCCTGCCCCAACAAC
TGCTTCCACTAATGTGGTACTCATCCTGGTAATTTTATCTTTCTTTCCTAATGTACCTTG
ACAACAACCCGTTTTACATTTGTGCCGGGTTTATGTTGAATACGACTGACCCCCTCTATG
ATTAAAAAATGTTTGGTAAAATACATGATTT

consensusID : consensus_7839#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 436
fasta sequence

                              [AAGGGTATGCTTCAAAGTAGCGGACACTTCTTGAAAGTGTTAAGATATCTCAAATGATTTTTAAGAATACAGCTATCTAGATACATGGAACCTAGTTATTTCACTATATTCCTAATCATCTGATTGTATCATTTAATGAACTATTCAAAATGAATCGCACCGATAATTCACCATCATCTTTATGCATCAGAGATGACGCTAGAAAATTAATGGATCCTAATAATTTAGTTGAATTATCACACTACGTTTGAAAGTGCCAATAGGTTTGTTAGTGCAAATGCATGTTCTCAACTCCGATTAATTGTTGAACAGATGCAACATTTAAAGTCTCAGGCAAAGGCTATCATACAAAACGCCCGTAGAGATACTTTGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTGTATGAAAAGC]

[+] EMBL CD133081             [AAGGGTATGCTTCAAAGTAGCGGACACTTCTTGAAAGTGTTAAGATATCTCAAATGATTTTTAAGAATACAGCTATCTAGATACATGGAACCTAGTTATTTCACTATATTCCTAATCATCTGATTGTATCATTTAATGAACTATTCAAAATGAATCGCACCGATAATTCACCATCATCTTTATGCATCAGAGATGACGCTAGAAAATTAATGGATCCTAATAATTTAGTTGAATTATCACACTACGTTTGAAAGTGCCAATAGGTTTGTTAG                                                                                                                                                                    ]
[+] EMBL CD132662             [              AAGTAGCGGACACTTCTTGAAAGTGTTAAGATATCTCAAATGATTTTTAAGAATATAGCTATCTAGATACATGGAACCTAGTTATTTCACTATATTCCTAATCATCTGATTGTATCATTTAATGAACTATTCAAAATGAATCGCACCGATAATTCACCATCATCTTTATGCATCAGAGATGACGCTAGAAAATTAATGGATCCTAATAATTTAGTTGAATTAGCACACTACG TTGAAAGTGCCAATAGTTTTGTTAGTGCAAATGCATGTTCTCAACTCCGATTAATTGTTGAACAGATGCAACATTTAAAGTCTCAGGCAAAGGCTATCATACAAAACGCCCGTAGAGATACTTTGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTGTATGAAAAGC]




>consensus_7839#1
AAGGGTATGCTTCAAAGTAGCGGACACTTCTTGAAAGTGTTAAGATATCTCAAATGATTT
TTAAGAATACAGCTATCTAGATACATGGAACCTAGTTATTTCACTATATTCCTAATCATC
TGATTGTATCATTTAATGAACTATTCAAAATGAATCGCACCGATAATTCACCATCATCTT
TATGCATCAGAGATGACGCTAGAAAATTAATGGATCCTAATAATTTAGTTGAATTATCAC
ACTACGTTTGAAAGTGCCAATAGGTTTGTTAGTGCAAATGCATGTTCTCAACTCCGATTA
ATTGTTGAACAGATGCAACATTTAAAGTCTCAGGCAAAGGCTATCATACAAAACGCCCGT
AGAGATACTTTGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTAT
TACGTGTATGAAAAGC

consensusID : consensus_7839#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [TTCGTCACGAGGTCAACGTCCGATTAATTGTTGAACAGATGCAACATTTAAAGTCTCAGGCAAAGGCTATCATACAAAACGCCCATAGAGATACTTTGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTGTATGAAAAGCCAGACGCTAGCCAGTATTTTAGTCTACTTTCACCCACTGAGTGGGATGGCTGTCCACATAAATATATTGGAGCTTATAAACTTCTCTCTGATATGTCTTGGATTTCTGAAGACGATCTTGATAACTACGAATCTAATCTCACAGCAGCACTCCAAATTATGGATAAAAACCAGATAATGCTAGATGTAAAACACATGA]

[+] EMBL CD077840             [TTCGTCACGAGGTCAACGTCCGATTAATTGTTGAACAGATGCAACATTTAAAGTCTCAGGCAAAGGCTATCATACAAAACGCCCATAGAGATACTTTGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTGTATGAAAAGCCAGACGCTAGCCAGTATTTTAGTCTACTTTCACCCACTGAGTGGGATGGCTGTCCACATAAATATATTGGAGCTTATAAACTTCTCTCTGATATGTCTTGGATTTCTGAAGACGATCTTGATAACTACGAATCTAATCTCACAGCAGCACTCCAAATTATGGATAAAAACCAGATAATGCTAGATGTAAAACACATGA]




>consensus_7839#2
TTCGTCACGAGGTCAACGTCCGATTAATTGTTGAACAGATGCAACATTTAAAGTCTCAGG
CAAAGGCTATCATACAAAACGCCCATAGAGATACTTTGTTACATAATCTTCCCTGTAATT
TCGTAAAAAAACCCGGAAATGTTTATTACGTGTATGAAAAGCCAGACGCTAGCCAGTATT
TTAGTCTACTTTCACCCACTGAGTGGGATGGCTGTCCACATAAATATATTGGAGCTTATA
AACTTCTCTCTGATATGTCTTGGATTTCTGAAGACGATCTTGATAACTACGAATCTAATC
TCACAGCAGCACTCCAAATTATGGATAAAAACCAGATAATGCTAGATGTAAAACACATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7839#0      ANAATTTGGCACGAGGAACATTGTATCATTTAATGAACTATTCAAAATGAATCGCACCGA 60
consensus_7839#2      ------------------------------------------------------------
consensus_7839#1      ------------------------------------------------------------
                                                                                  

consensus_7839#0      GAGATGACGCTAGAAAATTAATGGATCCTAATAATTTAGTTGAATTAGCACACTACGTTG 120
consensus_7839#2      ------------------------------------------------------------
consensus_7839#1      ------------------------------------------------------------
                                                                                  

consensus_7839#0      AAAGTGCCAATAGTTTTGTTAGTGCAAATGCATGTTCTCAAC-TCCGATTAATTGTTGAA 179
consensus_7839#2      ------------------------TTCGT-CACGAGGTCAACGTCCGATTAATTGTTGAA 35
consensus_7839#1      -------------------------AAGGGTATGCTTCAAAGTAGCGGACACTTCTTGAA 35
                                                     * *     **    **   * ** *****

consensus_7839#0      CA-GATGNNNNNNNNNNNNN--NNNNNNNNNNNGCTATCATACAAAACGCCCATAGAGAT 236
consensus_7839#2      CA-GATGCAACATTTAAAGT--CTCAGGCAAAGGCTATCATACAAAACGCCCATAGAGAT 92
consensus_7839#1      AGTGTTAAGATATCTCAAATGATTTTTAAGAATACAGCTATCTAGA---TACATGGAACC 92
                         * *                            *    **  * *     *** **   

consensus_7839#0      ACTTTGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTG 296
consensus_7839#2      ACTTTGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTG 152
consensus_7839#1      TAGTTATTTCACTATATTCCTAATCATCTGATTGTATCATTTAATGAACTATTCAAAATG 152
                         ** ** **  ** ****   * ** *  *   *  *       *  * *   *  **

consensus_7839#0      TATGAAAAGCCAGACGCTAGCCAGTATTTTAGTCTACTTTCA------------------ 338
consensus_7839#2      TATGAAAAGCCAGACGCTAGCCAGTATTTTAGTCTACTTTCACCCAC-TGAGTGGGATGG 211
consensus_7839#1      AATCGCA--CCGATAATTCACCATCATCTTTATGCATCAGAGATGACGCTAGAAAATTAA 210
                       **   *  **      *  ***  ** **  *  *                        

consensus_7839#0      ---------TAAATATATTGGAGCTTATAAACTTCTCTCTGATATATCT-TGGATTTCTG 388
consensus_7839#2      CTGTCCACATAAATATATTGGAGCTTATAAACTTCTCTCTGATATGTCT-TGGATTTCTG 270
consensus_7839#1      TGGATCCTAATAATTTAGTTGAATTATCACACTACGTTTGAAAGTGCCAATAGGTTTGTT 270
                                 *** ** * **  *   * *** *  *   *  *  *  * * *** * 

consensus_7839#0      AAGACGA-----TCTTGATAACTACGAATCTAATCTCACAGCAGCACTCCAAATTATGGA 443
consensus_7839#2      AAGACGA-----TCTTGATAACTACGAATCTAATCTCACAGCAGCACTCCAAATTATGGA 325
consensus_7839#1      AGTGCAAATGCATGTTCTCAACTCCGA--TTAATTGTTGAACAG-ATGCAACATTTAAAG 327
                      *   * *     * **   **** ***   ****     * *** *  * * ***     

consensus_7839#0      TAAAAACCAGATAATGCTAGATGTAAAACACATGACATAGTNNNNNNNNNNNNNNNNNGC 503
consensus_7839#2      TAAAAACCAGATAATGCTAGATGTAAAACACATGA------------------------- 360
consensus_7839#1      TCTCAGGCAAAGGCTATCATACAAAACGCCCGTAGAGATACTTTGTTACATAATCTTCCC 387
                      *   *  ** *   *   * *   **  * * *                           

consensus_7839#0      TATATGTATTCCTCACATCAAAATAAGAAGTCTTTGTTACCTACATTTCTTTAATTCANA 563
consensus_7839#2      ------------------------------------------------------------
consensus_7839#1      TGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTGTATGAAAAGC----------- 436
                                                                                  

consensus_7839#0      CAGGTTACAATACTATAAAACAGAAGTTCTATTTATCAGTAATTGTACAGTTNTTTAAAA 623
consensus_7839#2      ------------------------------------------------------------
consensus_7839#1      ------------------------------------------------------------
                                                                                  

consensus_7839#0      CGTTCTTTACCTATTCATCTGACTTTTTGGGTTCATCTTGATGTTTAACGTCTCCACTTT 683
consensus_7839#2      ------------------------------------------------------------
consensus_7839#1      ------------------------------------------------------------
                                                                                  

consensus_7839#0      ATTTCCCTCTCAATTTATTTGGTTCTTTATTACAATGCTTCCAATATATACTGCCTTTTG 743
consensus_7839#2      ------------------------------------------------------------
consensus_7839#1      ------------------------------------------------------------
                                                                                  

consensus_7839#0      GCGCAAAATCCTCGCTTTGTTATTTGCTCAACCGATTTTTCCCTTTTTATTCATATTTTC 803
consensus_7839#2      ------------------------------------------------------------
consensus_7839#1      ------------------------------------------------------------
                                                                                  

consensus_7839#0      TGTGCCCAAAATTTGTTATTATTCCTGCCCCAACAACTGCTTCCACTAATGTGGTACTCA 863
consensus_7839#2      ------------------------------------------------------------
consensus_7839#1      ------------------------------------------------------------
                                                                                  

consensus_7839#0      TCCTGGTAATTTTATCTTTCTTTCCTAATGTACCTTGACAACAACCCGTTTTACATTTGT 923
consensus_7839#2      ------------------------------------------------------------
consensus_7839#1      ------------------------------------------------------------
                                                                                  

consensus_7839#0      GCCGGGTTTATGTTGAATACGACTGACCCCCTCTATGATTAAAAAATGTTTGGTAAAATA 983
consensus_7839#2      ------------------------------------------------------------
consensus_7839#1      ------------------------------------------------------------
                                                                                  

consensus_7839#0      CATGATTT 991
consensus_7839#2      --------
consensus_7839#1      --------