These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7842#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1339 fasta sequence [CAATAATTTTAATAATAACAGAGATAAATAGGAAGTTGACAGC-TGTGAGTAGATAATTTTTCTC-AAAAACAGTAGTTTTTGTCACTTGTGCGTGAGTGTAATCAATTATCATTTAATGAGTAAGGAAAATGAATCTTTTTTAGAGGAAA-GACTAAATTACAATGGTAGTTAAGGAAATACTAAGAATATAAATATAAACAAAATAACCCGAAAGCAAAAAGATAAAGCTTAGTGTCGGTAATGATGCTATTGTTACTGTGTGTGTATGTTCAGAACAAAGTTCCATGAAGAATGCCTTACTTCTCTACAAGGGGTAACAGGCGCAAGTGTGTGTGTCGATTCATGCACCCATCAAGATGAAAATATTAGACACAAAAGTGAAAGAATAATAAAACTGACAACACAAACAATGAGTAAAACTGTCTAGAGATTACGATTCGATGGAAGTAAAGTAAAGAAAGAAGTTATACAGAAACGAAAGAGTCGGAATACGATTAAGTAAATTGAAGATGAGGAGAAACTGAATTGAAAAACGGCTGGTAAAACAAAAACAAACAAACGCGGGAAACATAATCAAAAATATAGCTATCATAACTAATTAAAATAATGATATTATATTTCTATTATTGTTATTATTATTATCACTGACAAAGATTTTATTTCGAAAGTAATAAAAATTAATTTTACCACCTGTGAGCAGATTGTTTGAAAATAGGAGGAAAAGTAAATAAATGAACAAAAATTATCTTTGCATTGATTGCATAACACGTATATCAAAATGAATCAAAATTAAATAATTAAAGCACAAAGCTCTATTGAATGAATGAATGAACACACAATAACGATAACATGAAAATTGAGCTAAGTAGAACATATTTATAGTCAAAGCATTTTACTATCATTTAAACAATAGGACGAATTATTTAAAAAAAACGTTGTTGATGATTATCATAGGATTCAATTAGATGCTCTTCAAAACAAATAAACCTTGAAGGTGGATTTACATGATGAGAATTGATTAAAGGGATGTAAGGAGTTTTGTTGAATGGAGATAACCGGGTAGCGGATCGATGTCTTATGCGTCCGGAATTCTTAGGCCCAGATTATTTCAGTAATCATTTTCAACATATGCGATCAATTTGTTGAATGAAATCACACCACAAACATTTTTACTACAACGACCGTGATACCATTGAACACCAATATTTACTTCACCACCTGTGTTATTATTCACCTTTGGTTTTCGTGTACATACTGACCTGTATCGTGGATTGTTACATTGACTTGACCTAGGTTTTCTAAGTTTAGGACCAGCTGAAATTCCCCCGCTATTACCATT] [+] EMBL CD074810 [CAATAATTTTAATAATAACAGAGATAAATAGGAAGTTGACAGC TGTGAGTAGATAATTTTTCTC AAAAACAGTAGTTTTTGTCACTTGTGCGTGAGTGTAATCAATTATCATTTAATGAGTAAGGAAAATGAATCTTTTTTAGAGGAAA GACTAAATTACAATGGTAGTTAAGGAAATACTAAGAATATAAATATAAACAAAATAACCCGAAAGCAAAAAGATAAAGCTTAGTGTCGGTAATGATGCTATTGTTACTGTGTGTGTATGTTCAGAACAAAGTTCCATGAAGAATGCCTTACTTCTCTACAAGGGGTAACAGGCGCAAGTGTGTGTGTCGATTCATGCACCCATCAAGATGAAAATATTAGACACAAAAGTGAAAGAATAATAAAACTGACAACACAAACAATGAGTAAAACTGTCTAGAGATTACGATTCGATGGAAGTAAAGTAAAGAAAGAAGTTATACAGAAACGAAAGAGTCGGAATACGATTAAGTAAATTGAAGATGAGGAGAAACTGAATTGAAAAACGGCTGGTAAAACAAAAACAAACAAACGCGGGAAACATAATCAAAAATATAGCTATCATAACTAATTAAA ] [-] EMBL SM036 [ AGTTGACAGCTTGTGAGTAGATAATTTTTCTCAAAAAACAGTAG TTTTGTCACTTGTGCGTGAGTGTAATCAATTATCATTTAATGAGTAA GAAAATGAATCTTTTTTAGAGGAAAVGACTAAATTACAATGGTAGTTAAGGAAATA ] [+] EMBL CD156879 [ AATACGATTAAGTAAATTGAAGATGAGGAGAAACTGAATTGAAAAACGGCTGGTAAAACAAAAACAAACAAACGCGGGAAACATAATCAAAAATATAGCTATCATAACTAATTAAAATAATGATATTATATTTCTATTATTGTTATTATTATTATCACTGACAAAGATTTTATTTCGAAAGTAATAAAAATTAATTTTACCACCTGTGAGCAGATTGTTTGAAAATAGGAGGAAAAGTAAATAAATGAACAAAAATTATCTTTGCATTGATTGCATAACACGTATATCAAAATGAATCAAAATTAAATAATTAAAGCACAAAGCTCTATTGAATGAATGAATGAACACACAATAACGATAACATGAAAATTGAGCTAAGTAGAACATATTTATAGTCAAAGC ] [-] EMBL CD167760 [ TATTGAATGAATGAATGAACACACAATAACGATAACATGAAAATTGAGCTAAGTAGAACATATTTATAGTCAAAGCATTTTACTATCATTTAAACAATAGGACGAATTATTTAAAAAAAACGTTGTTGATGATTATCATAGGATTCAATTAGATGCTCTTCAAAACAAATAAACCTTGAAGGTGGATTTACATGATGAGAATTGATTAAAGGGATGTAAGGAGTTTTGTTGAATGGAGATAACCGGGTAGCGGATCGATGTCTTATGCGTCCGGAATTCTTAGGCCCAGATTATTTCAGTAATCATTTTCAACATATGCGATCAATTTGTTGAATGAAATCACACCACAAACATTTTTACTACAACGACCGTGATACCATTGAACACCAATATTTACTTCACCACCTGTGTTATTATTCACCTTTGGTTTTCGTGTACATACTGACCTGTATCGTGGATTGTTACATTGACTTGACCTAGGTTTTCTAAGTTTAGGACCAGCTGAAATTCCCCCGCTATTACCATT] consensusID : consensus_7842#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [AATAATTTTAATAATAACAGAGATAAATAGGAAGTTGACAGCTGTGAGTAGATAATTTTTCTCAAAAACAGTANNNNTTGTCACTTGTGCGTGAGTGTAATCAATTATCATTTAATGAGTAAGGAAAATGAATCTTTTTTAGAGGAAAGACTAAATTACAATGGTAGTTAAGGAAATACTAAGAATATAAATATAAACAAAATAACCCGAAAGCAAAAAGATAAAGCTTAGTGTCGNNNNNNNNNNNNNNNNNNNNTGTGTGTATGTTCAGAACAAAGTTCCATGAAGAATGCCTTACTTCTCTACAAGGGGTAACAGGCGCAAGTGTGTGTGTCGATTCATGCACCCATCAAGATGAAAATATTAGACACAAAAGTGAAAGAATANNNNNNNNNNNNNNNNNNNNNNNNAGTAAAACTGTCTAGAGATTACGATTCGATGGAAGTAAAGTAAAGAAAGAAGTTATACAGAAACGAAAGAGTCGGAATACGATTAAGTAAATTGAAGATGAGGAGAAACTGAATTGAAAAACGGCTGGAAACATAATCAAAAATATAGCTATCATAACTAATTAGAA] [-] EMBL CD080984 [AATAATTTTAATAATAACAGAGATAAATAGGAAGTTGACAGCTGTGAGTAGATAATTTTTCTCAAAAACAGTANNNNTTGTCACTTGTGCGTGAGTGTAATCAATTATCATTTAATGAGTAAGGAAAATGAATCTTTTTTAGAGGAAAGACTAAATTACAATGGTAGTTAAGGAAATACTAAGAATATAAATATAAACAAAATAACCCGAAAGCAAAAAGATAAAGCTTAGTGTCGNNNNNNNNNNNNNNNNNNNNTGTGTGTATGTTCAGAACAAAGTTCCATGAAGAATGCCTTACTTCTCTACAAGGGGTAACAGGCGCAAGTGTGTGTGTCGATTCATGCACCCATCAAGATGAAAATATTAGACACAAAAGTGAAAGAATANNNNNNNNNNNNNNNNNNNNNNNNAGTAAAACTGTCTAGAGATTACGATTCGATGGAAGTAAAGTAAAGAAAGAAGTTATACAGAAACGAAAGAGTCGGAATACGATTAAGTAAATTGAAGATGAGGAGAAACTGAATTGAAAAACGGCTGGAAACATAATCAAAAATATAGCTATCATAACTAATTAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7842#0 CAATAATTTTAATAATAACAGAGATAAATAGGAAGTTGACAGCTGTGAGTAGATAATTTT 60 consensus_7842#1 -AATAATTTTAATAATAACAGAGATAAATAGGAAGTTGACAGCTGTGAGTAGATAATTTT 59 *********************************************************** consensus_7842#0 TCTCAAAAACAGTAGTTTTTGTCACTTGTGCGTGAGTGTAATCAATTATCATTTAATGAG 120 consensus_7842#1 TCTCAAAAACAGTANNNNTTGTCACTTGTGCGTGAGTGTAATCAATTATCATTTAATGAG 119 ************** ****************************************** consensus_7842#0 TAAGGAAAATGAATCTTTTTTAGAGGAAAGACTAAATTACAATGGTAGTTAAGGAAATAC 180 consensus_7842#1 TAAGGAAAATGAATCTTTTTTAGAGGAAAGACTAAATTACAATGGTAGTTAAGGAAATAC 179 ************************************************************ consensus_7842#0 TAAGAATATAAATATAAACAAAATAACCCGAAAGCAAAAAGATAAAGCTTAGTGTCGGTA 240 consensus_7842#1 TAAGAATATAAATATAAACAAAATAACCCGAAAGCAAAAAGATAAAGCTTAGTGTCGNNN 239 ********************************************************* consensus_7842#0 ATGATGCTATTGTTACTGTGTGTGTATGTTCAGAACAAAGTTCCATGAAGAATGCCTTAC 300 consensus_7842#1 NNNNNNNNNNNNNNNNN-TGTGTGTATGTTCAGAACAAAGTTCCATGAAGAATGCCTTAC 298 ****************************************** consensus_7842#0 TTCTCTACAAGGGGTAACAGGCGCAAGTGTGTGTGTCGATTCATGCACCCATCAAGATGA 360 consensus_7842#1 TTCTCTACAAGGGGTAACAGGCGCAAGTGTGTGTGTCGATTCATGCACCCATCAAGATGA 358 ************************************************************ consensus_7842#0 AAATATTAGACACAAAAGTGAAAGAATAATAAAACTGACAACACAAACAATGAGTAAAAC 420 consensus_7842#1 AAATATTAGACACAAAAGTGAAAGAATANNNNNNNNNNNNNNNNNNNNNNNNAGTAAAAC 418 **************************** ******** consensus_7842#0 TGTCTAGAGATTACGATTCGATGGAAGTAAAGTAAAGAAAGAAGTTATACAGAAACGAAA 480 consensus_7842#1 TGTCTAGAGATTACGATTCGATGGAAGTAAAGTAAAGAAAGAAGTTATACAGAAACGAAA 478 ************************************************************ consensus_7842#0 GAGTCGGAATACGATTAAGTAAATTGAAGATGAGGAGAAACTGAATTGAAAAACGGCTGG 540 consensus_7842#1 GAGTCGGAATACGATTAAGTAAATTGAAGATGAGGAGAAACTGAATTGAAAAACGGCTGG 538 ************************************************************ consensus_7842#0 TAAAACAAAAACAAACAAACGCGGGAAACATAATCAAAAATATAGCTATCATAACTAATT 600 consensus_7842#1 -------------------------AAACATAATCAAAAATATAGCTATCATAACTAATT 573 *********************************** consensus_7842#0 AAAATAATGATATTATATTTCTATTATTGTTATTATTATTATCACTGACAAAGATTTTAT 660 consensus_7842#1 AGAA-------------------------------------------------------- 577 * ** consensus_7842#0 TTCGAAAGTAATAAAAATTAATTTTACCACCTGTGAGCAGATTGTTTGAAAATAGGAGGA 720 consensus_7842#1 ------------------------------------------------------------ consensus_7842#0 AAAGTAAATAAATGAACAAAAATTATCTTTGCATTGATTGCATAACACGTATATCAAAAT 780 consensus_7842#1 ------------------------------------------------------------ consensus_7842#0 GAATCAAAATTAAATAATTAAAGCACAAAGCTCTATTGAATGAATGAATGAACACACAAT 840 consensus_7842#1 ------------------------------------------------------------ consensus_7842#0 AACGATAACATGAAAATTGAGCTAAGTAGAACATATTTATAGTCAAAGCATTTTACTATC 900 consensus_7842#1 ------------------------------------------------------------ consensus_7842#0 ATTTAAACAATAGGACGAATTATTTAAAAAAAACGTTGTTGATGATTATCATAGGATTCA 960 consensus_7842#1 ------------------------------------------------------------ consensus_7842#0 ATTAGATGCTCTTCAAAACAAATAAACCTTGAAGGTGGATTTACATGATGAGAATTGATT 1020 consensus_7842#1 ------------------------------------------------------------ consensus_7842#0 AAAGGGATGTAAGGAGTTTTGTTGAATGGAGATAACCGGGTAGCGGATCGATGTCTTATG 1080 consensus_7842#1 ------------------------------------------------------------ consensus_7842#0 CGTCCGGAATTCTTAGGCCCAGATTATTTCAGTAATCATTTTCAACATATGCGATCAATT 1140 consensus_7842#1 ------------------------------------------------------------ consensus_7842#0 TGTTGAATGAAATCACACCACAAACATTTTTACTACAACGACCGTGATACCATTGAACAC 1200 consensus_7842#1 ------------------------------------------------------------ consensus_7842#0 CAATATTTACTTCACCACCTGTGTTATTATTCACCTTTGGTTTTCGTGTACATACTGACC 1260 consensus_7842#1 ------------------------------------------------------------ consensus_7842#0 TGTATCGTGGATTGTTACATTGACTTGACCTAGGTTTTCTAAGTTTAGGACCAGCTGAAA 1320 consensus_7842#1 ------------------------------------------------------------ consensus_7842#0 TTCCCCCGCTATTACCATT 1339 consensus_7842#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||