These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7849#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 621 fasta sequence [TATTGAAACTGCGAACATCTGGTGGCGCGTAGTTACTCGTGAGAATGTCGTTGTCAAAGTATATTTCCCCTTCGTTGACCTCCCTACCACTATGCTTACCCCGTTATTATGGAGGTGTGATTCTAGTGGGTGTAAGCGCATTCGGGTTAAATCTTTACTTCGCCCGCCGAGTAATGCAAGCTCGCAAAGAGCACAATGTTGAGTTGCCTATAATGTATCACCCTACAGACAAATTATTTAACTGCATCCAAAGGGGTCATCAAAATTATCTAGAAGTTCTCCC-TTTTTTCTCATGGCGTTGTTTGTGGGTGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTTCTTGGTCGCCTGCTATATTTTCAGGGGTATGCAACCGGAGACCCAGCAAAGCGTTATAAAGGCGCTGTTTCCATGGCCGGCGGATTCCCAATGATTATGGGGTTGCTAGTTTTCGGTGTTCAACACTTGATGGCCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGGATTACATGTAACAACATTCATAAATATTTAGTAGACAGCTATTTTTATCATTGTCATGCATGCATTTAGAATAAAACAATAT] [-] EMBL CD161024 [TATTGAAACTGCGAACATCTGGTGGCGCGTAGTTACTCGTGAGAATGTCGTTGTCAAAGTATATTTCCCCTTCGTTGACCTCCCTACCACTATGCTTACCCCGTTATTATGGAGGTGTGATTCTAGTGGGTGTAAGCGCATTCGGGTTAAATCTTTACTTCGCCCGCCGAGTAATGCAAGCTCGCAAAGAGCACAATGTTGAGTTGCCTATAATGTATCACCCTACAGACAAATTATTTAACTGCATCCAAAGGGGTCATCAAAATTATCTAGAAGTTCTCCC TTTTTTCTCATGGCGTTGTTTGTGGGTGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTCCTTGGTCGCCTGCTATATTTTC ] [+] EMBL CD078294 [ TTCGTTGACCTCCCTACCACTATGCTTACCCCGTTATTATGGAGGTGTGATTCTAGTGGGTGTAAGCGCATTCGGGTTAAATCTTTACTTCGCCCGCCGAGTAATGCAAGCTCGCAAAGAGCACAATGTTGAGTTGCCTATAATGTATCACCCTACAGACAAATTATTTAACTGCATCCAAAGGGGTCATCAAAATTATCTAGAAGTTCTCCCTTTTTTTCTCATGGCGTTGTTTGTGGGTGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTTCTTGGTCGCCTTCTATATTTTCAGGGGTATGCAACCGGAGACCCAGCAAAGCGTTATAAAGGCGCTGTTTCCATGGCCGGCGGATTCCCAATGATTATGGGGTTGCTAGTTTTCGGTGTTCAACACTTGATGGCCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGGATTACATGTAACAACATTCATAAATATTTAGTAGACAGCTATTTTTATCATTGTCATGCATGCATTTAGAATAAAACAA ] [+] EMBL AI977180 [ TTGTTTGTGGGTGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTTCTTGGTCGCCTGCTATATTTTCAGGGGTATGCAACCGGAGACCCAGCAAAGCGTTATAAAGGCGCTGTTTCCATGGCCGGCGGATTCCCAATGATTATGGGGTTGCTAGTTTTCGGTGTTCAACACTTGATGGCCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGGATTACATGTAACAACATTCATAAATATTTAGTAGACAGCTATTTTTATCATTGTCATGCATGCATTTAGAATAAAACAATAT] [-] EMBL CD072942 [ tgAACACTTGATGGCCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGGATTACATGTAACAACATTCATAAATATTTAGTAGACAGCTATTTTTATCATTGTCATGCATGCATTTAGAATAAAACAATA ] consensusID : consensus_7849#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [TTCGTTGACCTCCCTACCACTATGCTTACCCCGTTATTATGGAGGTGTGATTCTAGTGGGTGTAAGCGCATTCGGGTTAAATCTTTACTTCGCCCGCCGAGTAATGCAAGCTCGCAAAGAGCACAATGTTGAGTTGCCTATAATGTATCACCCTACAGACAAATTATTTAACTGCATCCAAAGGGGTCATCAAAATTATCTAGAAGTTCTCCCTTTTTTTCTCATGGCGTTGTTTGTGGGTGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTTCTTGGTCGCCTTCTATATTTTCAGGGGTATGCAACCGGAGACCCAGCAAAGCGTTATAAAGGCGCTGTTTCCATGGCCGGCGGGNGCCCCCCCCCCCCCCCCCCCCCCCTTTNGGNGTTAACACTTGATGGCCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGGATTACATGTAACAACATTNGGGGGCATTTACTAGACAGCTATTTTTATCATTGTCATGCATGCATTTAGAATANAACAA] [+] EMBL CD078381 [TTCGTTGACCTCCCTACCACTATGCTTACCCCGTTATTATGGAGGTGTGATTCTAGTGGGTGTAAGCGCATTCGGGTTAAATCTTTACTTCGCCCGCCGAGTAATGCAAGCTCGCAAAGAGCACAATGTTGAGTTGCCTATAATGTATCACCCTACAGACAAATTATTTAACTGCATCCAAAGGGGTCATCAAAATTATCTAGAAGTTCTCCCTTTTTTTCTCATGGCGTTGTTTGTGGGTGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTTCTTGGTCGCCTTCTATATTTTCAGGGGTATGCAACCGGAGACCCAGCAAAGCGTTATAAAGGCGCTGTTTCCATGGCCGGCGGGNGCCCCCCCCCCCCCCCCCCCCCCCTTTNGGNGTTAACACTTGATGGCCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGGATTACATGTAACAACATTNGGGGGCATTTACTAGACAGCTATTTTTATCATTGTCATGCATGCATTTAGAATANAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7849#0 TATTGAAACTGCGAACATCTGGTGGCGCGTAGTTACTCGTGAGAATGTCGTTGTCAAAGT 60 consensus_7849#1 ------------------------------------------------------------ consensus_7849#0 ATATTTCCCCTTCGTTGACCTCCCTACCACTATGCTTACCCCGTTATTATGGAGGTGTGA 120 consensus_7849#1 ----------TTCGTTGACCTCCCTACCACTATGCTTACCCCGTTATTATGGAGGTGTGA 50 ************************************************** consensus_7849#0 TTCTAGTGGGTGTAAGCGCATTCGGGTTAAATCTTTACTTCGCCCGCCGAGTAATGCAAG 180 consensus_7849#1 TTCTAGTGGGTGTAAGCGCATTCGGGTTAAATCTTTACTTCGCCCGCCGAGTAATGCAAG 110 ************************************************************ consensus_7849#0 CTCGCAAAGAGCACAATGTTGAGTTGCCTATAATGTATCACCCTACAGACAAATTATTTA 240 consensus_7849#1 CTCGCAAAGAGCACAATGTTGAGTTGCCTATAATGTATCACCCTACAGACAAATTATTTA 170 ************************************************************ consensus_7849#0 ACTGCATCCAAAGGGGTCATCAAAATTATCTAGAAGTTCTCCCTTTTTT-CTCATGGCGT 299 consensus_7849#1 ACTGCATCCAAAGGGGTCATCAAAATTATCTAGAAGTTCTCCCTTTTTTTCTCATGGCGT 230 ************************************************* ********** consensus_7849#0 TGTTTGTGGGTGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTTC 359 consensus_7849#1 TGTTTGTGGGTGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTTC 290 ************************************************************ consensus_7849#0 TTGGTCGCCTGCTATATTTTCAGGGGTATGCAACCGGAGACCCAGCAAAGCGTTATAAAG 419 consensus_7849#1 TTGGTCGCCTTCTATATTTTCAGGGGTATGCAACCGGAGACCCAGCAAAGCGTTATAAAG 350 ********** ************************************************* consensus_7849#0 GCGCTGTTTCCATGGCCGGCGGATTCCCAATGATTATGGGGTTGCTAGTTTTCGGTGTTC 479 consensus_7849#1 GCGCTGTTTCCATGGCCGGCGGGNGCCCCCCCCCCCCCCCCCCCCCC-CTTTNGGNGTT- 408 ********************** *** * *** ** *** consensus_7849#0 AACACTTGATGGCCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGG 539 consensus_7849#1 AACACTTGATGGCCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGG 468 ************************************************************ consensus_7849#0 ATTACATGTAACAACATTCATAAATATTTAGTAGACAGCTATTTTTATCATTGTCATGCA 599 consensus_7849#1 ATTACATGTAACAACATTNGGGGGCATTTACTAGACAGCTATTTTTATCATTGTCATGCA 528 ****************** ***** ***************************** consensus_7849#0 TGCATTTAGAATAAAACAATAT 621 consensus_7849#1 TGCATTTAGAATANAACAA--- 547 ************* ***** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||