These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7851#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 453 fasta sequence [ACAATTTGAGTGCAGCAAAGTGGTCACTGACGCTCCTTTTCATAAAAAAGATAGCATAGTAAAATCCAACCGATCTACAGAATCCTTTGAGAAGACAGAAAAACGTCAAAGTATTCAAGAGACAAATGATTCGAATTCTGTTTGCATTACTAGACCATCGAGATGTGATTCTCCAAGGTTGAGTCAAACAATGATTCCATTATCGAAACAGCCTTCATGTACATCAAGTTATTCTGAGGGTTATACTGTATCTACTGAACGACGTATGGTTGATGAACTTTCACAACGATATATGCTTTTGGATAAAGTAAACCTAGATGAACTAAGTTCTGGTGGACAGACTGCATTCCAAGATGTTATGTCAAAAAGTGTTGATTTAGGAAGTACTCATGTTATAAAAGAATTTCAACCAACCATCGAAGTTTTTCATCATATTGGTGATGAAACTGAAGA] [+] EMBL CD118999 [ACAATTTGAGTGCAGCAAAGTGGTCACTGACGCTCCTTTTCATAAAAAAGATAGCATAGTAAAATCCAACCGATCTACAGAATCCTTTGAGAAGACAGAAAAACGTCAAAGTATTCAAGAGACAAATGATTCGAATTCTGTTTGCATTACTAGACCATCGAGATGTGATTCTCCAAGGTTGAGTCAAACAATGATTCCATTATCGAAACAGCCTTCATGTACATCAAGTTATTCTGAGGGTTATACTGTATCTACTGAACGACGTATGGTTGATGAACTTTCACAACGATATATGCTTTTGGATAAAGTAAACCTAGATGAACTAAGTTCTGGTGGACAGACTGCATTCCAAGATGTTATGTCAAAAAGTGTTGATTTAGGAAGTACTCATGTTATAAAAGAATTTCAACCAACCATCGAAGTTTTTCATCATATTGGTGATGAAACTGAAGA] [+] EMBL CD119066 [ACAATTTGAGTGCAGCAAAGTGGTCACTGACGCTCCTTTTCATAAAAAAGATAGCATAGTAAAATCCAACCGATCTACAGAATCCTTTGAGAAGACAGAAAAACGTCAAAGTATTCAAGAGACAAATGATTCGAATTCTGTTTGCATTACTAGACCATCGAGATGTGATTCTCCAAGGTTGAGTCAAACAATGATTCCATTATCGAAACAGCCTTCATGTACATCAAGTTATTCTGAGGGTTATACTGTATCTACTGAACGACGTATGGTTGATGAACTTTCACAACGATATATGCTTTTGGATAAAGTAAACCTAG ] [-] EMBL CD118109 [ TTGCATTACTAGACCATCGAGATGTGATTCTCCAAGGTTGAGTCAAACAATGATTCCATTATCGAAACAGCCTTCATGTACATCAAGTTATTCTGAGGGCTATTCTGTATCTACTGAACGACGTATGGTTGATGAACTTTCACAACGATATATGCTTTTGGATAAAGTAAACCTAGATGAA ] [+] EMBL CD117191 [ ATTCTCCAAGGTTGAGTCAAACAATGATTCCATTATCGAAACAGCCTTCATGTACATCAAGTTATTCTGAGGGTTATACTGTATCTACTGAACGACGTATGGTTGATGAACTTTCACAACGATATATGCTTTTGGATAAAGTAAACCTAGATGAACTAAGTTCTGGTGGACAGACTGCATTCCAAGATGTTATGTCAAAAAGTGTTGATTTAGGAAGTACTCATGTTA ] consensusID : consensus_7851#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence [CCGGAATGCCGACCTTTCAGAAGTTATGTCAAAAAGTTTGATTTAGGAAGTACTCATGTTATAAAAGAATTTCAACCAACCATCGAAGTTTTTCATCGTATTGGTGATGAAACTGAAGAAGTTGATCCTTCTACTATACCAGATGAAATGCTATCCCCATTCCGAGTAAATACACCTGCTGGGTTTACTCTCTCACCTGATTTTACTAATTTGAAATCTGATCCCAA] [+] EMBL CD126999 [CCGGAATGCCGACCTTTCAGAAGTTATGTCAAAAAGTTTGATTTAGGAAGTACTCATGTTATAAAAGAATTTCAACCAACCATCGAAGTTTTTCATCGTATTGGTGATGAAACTGAAGAAGTTGATCCTTCTACTATACCAGATGAAATGCTATCCCCATTCCGAGTAAATACACCTGCTGGGTTTACTCTCTCACCTGATTTTACTAATTTGAAATCTGATCCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7851#0 ACAATTTGAGTGCAGCAAAGTGGTCACTGACGCTCCTTTTCATAAAAAAGATAGCATAGT 60 consensus_7851#1 ------------------------------------------------------------ consensus_7851#0 AAAATCCAACCGATCTACAGAATCCTTTGAGAAGACAGAAAAACGTCAAAGTATTCAAGA 120 consensus_7851#1 ---------CCGGAATGCCGA--CCTTTCAGAAGTTA------TGTCAAAAAGTTTGATT 43 *** * * ** ***** ***** * ****** ** * consensus_7851#0 GACAAATGATTCGAATTCTGTTTGCATTACTA--GACCATCGAGATGTGATTCTCCAAGG 178 consensus_7851#1 TAGGAAGTACTCATGTTATAAAAGAATTTCAACCAACCATCGAAGTTT--TTCATCGTAT 101 * ** * ** ** * * *** * * ******** * * *** * consensus_7851#0 TTGAGTCAAACAATGATTCCATTATCGAAACAGCCTTCATGTACATCAAGTTATTCTGAG 238 consensus_7851#1 TGGTGATGAA-ACTGAAGAAGTTG-------ATCCTTCTACTATACCAGATGA-----AA 148 * * * ** * *** ** * ***** ** * ** * * * consensus_7851#0 GGTTATACTGTATCTACTGAACGACGTATGGTTGATGAACTTTCACAACGATATATGCTT 298 consensus_7851#1 TGCTATCCCCATTCCGAGTAAATACACCTGCTGGGTTTACTCTCTCACCTGATTTTACTA 208 * *** * ** ** ** ** * * * *** ** ** * * * ** consensus_7851#0 TTGGATAAAGTAAACCTAGATGAACTAAGTTCTGGTGGACAGACTGCATTCCAAGATGTT 358 consensus_7851#1 ATTTGAAATCTGATCCCAA----------------------------------------- 227 * ** * * ** * consensus_7851#0 ATGTCAAAAAGTGTTGATTTAGGAAGTACTCATGTTATAAAAGAATTTCAACCAACCATC 418 consensus_7851#1 ------------------------------------------------------------ consensus_7851#0 GAAGTTTTTCATCATATTGGTGATGAAACTGAAGA 453 consensus_7851#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||