cluster # 7856

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Schistosoma mansoni
cluster # 7856 cluster # 7856 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7856#0 length = 461 sequences # 4

consensus_7856#1 length = 260 sequences # 1

consensusID : consensus_7856#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 461
fasta sequence

                              [TTTTTTTTTTTTTTTTACTAACAGATATTTATATTTAAATAAATGTAACAGAGAATACCCGATGAGTGGGTTTAACAAGCGGTTGGTCTATGAGTTGACAAAACACCACAAAAGGTATATTACATAAGAATAAGAATTTTAAAAGATCAGTAACAGATAATAATATACAAAGTACTATTTCCTCATCAGTAATATCACAATAGATGTTGCTGAACAGTAGTAAAGAATGCCAGAAAAATCACAAAATCAGATGACCATAATCTCGAAACATTAGGAAACTGATATTACAAGCCATGAAAGAAATACATAAAACAAAACTATTGGATATACAGAGAGAGCAACACGATTTTT-CGGCAATGTAGGATGGACAAAAATAAAAGATGCATAAGATGAATAAACCAACCCAGAAATAACAATGAATAGCCGTATGATGAAAACAAACACAGAATTAGAACTTGCAA]

[+] EMBL AI394871             [TTTTTTTTTTTTTTTTACTAACAGATATTTATATTTAAATAAATGTAACAGAGAATACCCGATGAGTGGGTTTAACAAGCGGTTGGTCTATGAGTTGACAAAACACCACAAAAGGTATATTACATAAGAATAAGAATTTTAAAAGATCAGTAACAGATAATAATATACAAAGTACTATTTCCTCATCAGTAATATCACAATAGATGTTGCTGAACAGTAGTAAAGAATGCCAGAAAAATCACAAAATCAGATGACCATAATCTCGAAACATTAGGAAACTGATATTACAAGCCATGAAAGAAATACATAAAACAAAACTATTGGATATACAGAGAGAGCAACACGATTTTTCCGGCAATGTAGGA                                                                                                 ]
[+] EMBL CD072948             [                         TATTTATATTTAAATAAATGTAACAGAGAATACCCGATGAGTGGGTTTAACAAGCGGTTGGTCTATGAGTTGACAAAACACCACAAAAGGTATATTACATAAGAATAAGAATTTTAAAAGAT AGTAACAGATAATAATATACAAAGTACTATTTCCTCATCAGTAATATCACAATAGATGTTGCTGAACAGTAGTAAAGAATGCCAGAAAAATCACAAAATCAGATGACCATAATCTCGAAACATTAGGAAACTGATATTACAAGCCATGAAAGAAATACATAAAACAAAACTATTGGATATACAGAGAGAGCAACACGATTTTT CGGCAATGTAGGATGGACAAAAATAAAAGATGCATAAGATGAATAAACCAACCCAGAAATAACAATGAATAGCCGTATGATGAAAACAAACACAGAATTAGAACTTGCAA]
[-] EMBL AI390078             [                                                                      TTTAACAAGCGGTTGGTCTATGAGTTGACAAAACACCACAAAAGGTATATTACATAAGAATAAGAATTTTAAAAGATCAGTAACAGATAATAATATACAAAGTACTATTTCCTCATCAGTAATATCACAATAGATGTTGCTGAACAGTAGTAAACAATGCCAGAAAGCTCACAAAATCAGATGACCATAATCTCctc                                                                                                                                                                                                   ]
[+] EMBL CD136203             [                                                                                             GTTGACAAAACACCACAAAAGGTATATTACATAAGAATAAGAATTTTAAAAGATCGGTAACAGATAATAATATACAAAGTACTATTTCCTCATCAGTAATATCACAATAGATGTTGCTGAACAGTAGTAAACAATGCCAGAAAAATCACAAAATCAGATGACCATAATCTCGAAACATTAGGAAACTGATATTACAAGCCATGAAAGAAATACATAAAACAAAACTATTGGATATACAGAGAGAGCAACACGATTTTT CGGCAATGTAGGATGGACAAAAATA                                                                                     ]




>consensus_7856#0
TTTTTTTTTTTTTTTTACTAACAGATATTTATATTTAAATAAATGTAACAGAGAATACCC
GATGAGTGGGTTTAACAAGCGGTTGGTCTATGAGTTGACAAAACACCACAAAAGGTATAT
TACATAAGAATAAGAATTTTAAAAGATCAGTAACAGATAATAATATACAAAGTACTATTT
CCTCATCAGTAATATCACAATAGATGTTGCTGAACAGTAGTAAAGAATGCCAGAAAAATC
ACAAAATCAGATGACCATAATCTCGAAACATTAGGAAACTGATATTACAAGCCATGAAAG
AAATACATAAAACAAAACTATTGGATATACAGAGAGAGCAACACGATTTTTCGGCAATGT
AGGATGGACAAAAATAAAAGATGCATAAGATGAATAAACCAACCCAGAAATAACAATGAA
TAGCCGTATGATGAAAACAAACACAGAATTAGAACTTGCAA

consensusID : consensus_7856#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 260
fasta sequence

                              [CTATTTGTTGCACATAGAAAATACTAACAGATATTTGTATTTAAATAAATGTAACAGAGAATACCCGATGAGTGGGTTTAACAAGCGGTTGGTCTATGAGTTGACAAAACACCACAAAAGGTATATTACATAAGAATAAGAATTTTAAAAGATCAGTAACAGATGCATAATATACAAAGTACTATTTCCTCANCGTAATATCACAATAGATGTTTGCTGAACAGTAGTAAACCATGCCAGAAAAATCACAAAATCAGATG]

[+] EMBL AI447077             [CTATTTGTTGCACATAGAAAATACTAACAGATATTTGTATTTAAATAAATGTAACAGAGAATACCCGATGAGTGGGTTTAACAAGCGGTTGGTCTATGAGTTGACAAAACACCACAAAAGGTATATTACATAAGAATAAGAATTTTAAAAGATCAGTAACAGATGCATAATATACAAAGTACTATTTCCTCANCGTAATATCACAATAGATGTTTGCTGAACAGTAGTAAACCATGCCAGAAAAATCACAAAATCAGATG]




>consensus_7856#1
CTATTTGTTGCACATAGAAAATACTAACAGATATTTGTATTTAAATAAATGTAACAGAGA
ATACCCGATGAGTGGGTTTAACAAGCGGTTGGTCTATGAGTTGACAAAACACCACAAAAG
GTATATTACATAAGAATAAGAATTTTAAAAGATCAGTAACAGATGCATAATATACAAAGT
ACTATTTCCTCANCGTAATATCACAATAGATGTTTGCTGAACAGTAGTAAACCATGCCAG
AAAAATCACAAAATCAGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7856#0      TTTTTTTTTTTTTTT------TACTAACAGATATTTATATTTAAATAAATGTAACAGAGA 54
consensus_7856#1      CTATTTGTTGCACATAGAAAATACTAACAGATATTTGTATTTAAATAAATGTAACAGAGA 60
                       * *** **     *      *************** ***********************

consensus_7856#0      ATACCCGATGAGTGGGTTTAACAAGCGGTTGGTCTATGAGTTGACAAAACACCACAAAAG 114
consensus_7856#1      ATACCCGATGAGTGGGTTTAACAAGCGGTTGGTCTATGAGTTGACAAAACACCACAAAAG 120
                      ************************************************************

consensus_7856#0      GTATATTACATAAGAATAAGAATTTTAAAAGATCAGTAACAGATA-ATAATATACAAAGT 173
consensus_7856#1      GTATATTACATAAGAATAAGAATTTTAAAAGATCAGTAACAGATGCATAATATACAAAGT 180
                      ********************************************  **************

consensus_7856#0      ACTATTTCCTCATCAGTAATATCACAATAGATGTT-GCTGAACAGTAGTAAAGAATGCCA 232
consensus_7856#1      ACTATTTCCTCANC-GTAATATCACAATAGATGTTTGCTGAACAGTAGTAAACCATGCCA 239
                      ************ * ******************** ****************  ******

consensus_7856#0      GAAAAATCACAAAATCAGATGACCATAATCTCGAAACATTAGGAAACTGATATTACAAGC 292
consensus_7856#1      GAAAAATCACAAAATCAGATG--------------------------------------- 260
                      *********************                                       

consensus_7856#0      CATGAAAGAAATACATAAAACAAAACTATTGGATATACAGAGAGAGCAACACGATTTTTC 352
consensus_7856#1      ------------------------------------------------------------
                                                                                  

consensus_7856#0      GGCAATGTAGGATGGACAAAAATAAAAGATGCATAAGATGAATAAACCAACCCAGAAATA 412
consensus_7856#1      ------------------------------------------------------------
                                                                                  

consensus_7856#0      ACAATGAATAGCCGTATGATGAAAACAAACACAGAATTAGAACTTGCAA 461
consensus_7856#1      -------------------------------------------------