These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 407 fasta sequence [ATGAAATGTATTTACGCACATTTAAACATCTACCGGAATTCAATTCTCTATAATATATTTCAGTGCTTTAGGGTCAGGGTTCAAG-AATTTTAGACCTTCTTCAGAGTTGGAAGCTTTTGGAAGTCTATACTTATTGATGTCAGAGACATAAAATGCTGCAGCGAA-CAAAGCAGTAGCGATTGTAGCGCTAACTATGAAAAATTTATTATAAAGCTTATTGTGCTGTTTGTGCAATTCAGACCAACTTCCTTGAGGAATTTGAAGTTCATCATACGTCCCCGCTGGAAAACGCATGGGCACATGGTTCCTGACGTGATTTACCCGGCTAATACTTAGCAGATTATTAGGTGTCTTTGTAACAAAACGACTGATCATCTTGGGTTTATAATACCGCCAAGCGTTACACG] [-] EMBL AA559399 [ATGAAATGTATTTACGCACATTTAAACATCTACCGGAATTCAATTCTCTATAATATATTTCAGTGCTTTAGGGTCAGGGTTCAAG AATTTTAGACCTTCTTCAGAGTTGGAAGCTTTTGGAAGTCTATACTTATTGATGTCAGAGACATAAAATGCTGCAGCGAANCAAAGCAGTAGCGATTGTAGCGCTAACTATGAAAAATTTATTATAAAGCTT ] [+] EMBL CD135231 [ ATTCTCTATAATATATTTCAGTGCTTTAGGGTCAGGGTTCAAG AATTTTAGACCTTCTTCAGAGTTGGAAGCTTTTGGAAGTCTATACTTATTGATGTCAGAGACATAAAATGCTGCAGCGAA CAAAGCAGTAGCGATTGTAGCGCTAACTATGAAAAACTTATTATAAAGCTTATTGTGCTGTTTGTGCAATTCAGACCAACTTCCTTGAGGAATTTGAAGTTCATCATACGTCCCCGCTGGAAAACGCATGGGCACATGGTTCCTGACGTGATTTACCCGGCTAATACTTAGCAGATTATTAGGTGTCTTTGTAACAAAACGACTGATCATCTTGGGTTTATAATACCGCCAAGCGTTACACG] [-] EMBL CD135233 [ TTCTCTATAATATATTTCAGTGCTTTAGGGTCAGGGTTCAAG AATTTTAGACCTTCTTCAGAGTTGGAAGCTTTTGGAAGTCTATACTTATTGATGTCAGAGACATAAAATGCTGCAGCGAA CAAAGCAGTAGCGATTGTAGCGCTAACTATGAAAAATTTATTATAAAGCTTATTGTGCTGTTTGTGCAATTCAGACCAACTTCCTTGAGGAATTTGAAGTTCATCTTAC ] [-] EMBL CD146068 [ GGGTTCAAGAAATTTTAGACTTTCTTCAGAGTTGGAAGCTTNTGGAAGTCTATACTTATTGATGTCAGAGACATAAAATGCTGCAGCGAA CAAAGCAGTAGCGATTGTAGCGCTAACTATGAAAAATTTATTATAAAGCTTATTGTGCTGTTTGTGCAATTCAGACCAACTTCCTTGAGGAATTTGAAGTTCATCATACGTCCCCGCTGGAAAACGCATGGGCACATGGTTCCTGACGTGATTTACCCGGCTAATACTTAGCAGATTATTAGGTGTCTTTGTAACAAAACGACTGATCATCTTGGGTTTATAATACCGCCAA ] consensusID : consensus_7865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence [CATGAAATGTATTTACGCACATTTAAACANNTACCGGAATTTCAATTNTTNTATAATATATTTCCAGTGCTTTAGGGTCCAGGGTTTCAAGAATTTTAGACCTNNTTNCAGAGTTGGAAGCTTTTGGAAGNTNTATACTTATTGATGTTCAGAGAACATAAAATGCTGCAGCGAAACAAAGCAGTAGCGATTGTAGCGCTAAACTATGAAAAATTTATTATAAAGCTTATTGTGCTGTTTGTGCAATTTCAGCACGTGCCGAA] [-] EMBL AA559750 [CATGAAATGTATTTACGCACATTTAAACANNTACCGGAATTTCAATTNTTNTATAATATATTTCCAGTGCTTTAGGGTCCAGGGTTTCAAGAATTTTAGACCTNNTTNCAGAGTTGGAAGCTTTTGGAAGNTNTATACTTATTGATGTTCAGAGAACATAAAATGCTGCAGCGAAACAAAGCAGTAGCGATTGTAGCGCTAAACTATGAAAAATTTATTATAAAGCTTATTGTGCTGTTTGTGCAATTTCAGCACGTGCCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7865#0 -ATGAAATGTATTTACGCACATTTAAACATCTACCGGAATT-CAATTCT-CTATAATATA 57 consensus_7865#1 CATGAAATGTATTTACGCACATTTAAACANNTACCGGAATTTCAATTNTTNTATAATATA 60 **************************** ********** ***** * ********* consensus_7865#0 TTTC-AGTGCTTTAGGGTCAGGG--TTCAAGAATTTTAGACCTTCTTC-AGAGTTGGAAG 113 consensus_7865#1 TTTCCAGTGCTTTAGGGTCCAGGGTTTCAAGAATTTTAGACCTNNTTNCAGAGTTGGAAG 120 **** ************** ** ****************** ** *********** consensus_7865#0 CTTTTGGAAGT-CTATACTTATTGATGT-CAGAGA-CATAAAATGCTGCAGCGAA-CAAA 169 consensus_7865#1 CTTTTGGAAGNTNTATACTTATTGATGTTCAGAGAACATAAAATGCTGCAGCGAAACAAA 180 ********** *************** ****** ******************* **** consensus_7865#0 GCAGTAGCGATTGTAGCGCTAA-CTATGAAAAATTTATTATAAAGCTTATTGTGCTGTTT 228 consensus_7865#1 GCAGTAGCGATTGTAGCGCTAAACTATGAAAAATTTATTATAAAGCTTATTGTGCTGTTT 240 ********************** ************************************* consensus_7865#0 GTGCAATTCAGACCAACTTCCTTGAGGAATTTGAAGTTCATCATACGTCCCCGCTGGAAA 288 consensus_7865#1 GTGCAATTTCAGC--ACGTGCCGAA----------------------------------- 263 ******** * ** * * * consensus_7865#0 ACGCATGGGCACATGGTTCCTGACGTGATTTACCCGGCTAATACTTAGCAGATTATTAGG 348 consensus_7865#1 ------------------------------------------------------------ consensus_7865#0 TGTCTTTGTAACAAAACGACTGATCATCTTGGGTTTATAATACCGCCAAGCGTTACACG 407 consensus_7865#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||