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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7867#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1126 fasta sequence
[ATTCGCGTTACGTCATCGACGTGTTAAGGCTGGTTCAAGAAGTATGGCTAGTGATCAAATATGTTATACTTTAGTCGGTTTGTCATCTGAAACAAAAACATATACTGAGCAAAAACTCAAAGACGATTTGCAGAACAGCAATGATAATGTGAAAAGAGAGGCACTTAAGGAACTCATTCGGCTAATTATTAATGGCGAGAAGTTCCCAAATTTATTAATGACTGTGATTCGCTTTGTTATGCCGTCACAGGATCACATGATTAAAAAGTTGTTGCTTTTATTCTGGGAAGTTGTGCCTAAGTACAGTTCAGACGGGAAACTGCTCCATGAAATGATACTAGTATGTGATGCTTATCGCAAAGATTTACAACACCCTAATGAATTCATCCGTGGGTCAACTTTACGATTTCTGTGTAAATTAAAAGAACCTGAATTACTGGAGCCTATTATGCCATCTATTCAACAGTGTCTGGAACATCGACATGCATATGTTCGACGAAATGCAGTGCTGGCAATTTTTACGATATACAAAAACTTCGAATCGCTTATTCCGGATGCACCTGAGAAAATTCTAAGATTCCTCGAACAAGAGCAAGATTCTTCTTGCAAAAGGAATGCTTTTATGATGTTGCTTCATGTCAGTCAGAGTACTGCTCTTGATTATCTTACTTCTTGTTTGGATGAAGTACAAAATTTCGGTGATATTCTTCAGCTCATAATTGTAGAGTTAATCTACAAAGTATGTCTCGCTAAACCTTCTGAAAGGTTACGGTTTATTCGTTGTATTTACAGCTTATTACAATCTAGTAGTGCTGCTGTGCGCTATGAAGCTGCAGGGACGCTGACAACACTAAGTTCTGCTCCTAGTGCCATTAAGGCAGCCGCAAGTTGTTACATTAATTTAATCCTGAAAGAAAGTGACAACAATGTAAAACTAATTGTATTGTCACGTCTCACTGATTTACGTCAGTATCATGAGCGTATTCTACAGGACCTAATTATGGATATCGTGCAGATCATANATGCATCTGATATGGAAGTTCGTCAGAAAACACTTAATTTAACGATGGATTTAGTGACAGCTCGTACAGCTGAAGAATTGATTAAGATATTTCGTAAGGAACTT]
[-] EMBL CD094672 [ATTCGCGTTACGTCATCGACGTGTTAAGGCTGGTTCAAGAAGTATGGCTAGTGATCAAATATGTTATACTTTAGTCGGTTTGTCATCTGAAACAAAAACATATACTGAGCAAAAACTCAAAGACGATTTGCAGAACAGCAATGATAATGTGAAAAGAGAGGCACTTAAGGAACTCATTCGGCTAATTATTAATGGCGAGAAGTTCCCAAATTTATTAATGACTGTGATTCGCTTTGTTATGCCGTCACAGGATCACATGATTAAAAAGTTGTTGCTTTTATTCTGGGAAGTTGTGCCTAAGTACAGTTCAGACGGGAAACTGCTCCATGAAATGATACTAGTATGTGATGCTTATCGCAAAGATTTACAACACCCTAAT ]
[-] EMBL CD133624 [ TTGTGCTTAAGTACAGTTCAGACGGGAAACTGCTCCATGAAATGATACTAGTATGTGATGCTTATCGCAAAGATTTACAACACCCTAATGAATTCATCCGTGGGTCAACTTTACGATTTCTGTGTAAATTAAAAGAACCTGAATTACTGGAGCCTATTATGCCATCTATTCAACAGTGTCTGGAACATCGACATGCATATGTTCGACGAAATGCAGTGCTGGCAATTTTTACGATATACAAAAACTTCGAATCGCTTATTCCGGATGCACCTGAGAAAATTCTAAGATTCCTCGAACAAGAGCAAGATTCTTCTTGCAAAAGGAATGCTTTTATGATGT ]
[-] EMBL CD165538 [ CAGTGTCTGGAACATCAGCATGCATATGTTCGACGAAATGCAGTGCTGGCAATTTTTACGATATACAAAAACTTCGAATCGCTTATTCCGGATGCACCTGAGAAAATTCTAAGATTCCTCGAACAAGAGCAAGATTCTTCTTGCAAAAGGAATGCTTTTATGATGTTGCTTCATGTCAGTCAGAGTACTGCTCTTGATTATCTTACTTCTTGTTTGGATGAAGTACAAAATTTCGGTGATATTCTTCAGCTCATAATTGTAGAGTTAATCTACAAAGTATGTCTCGCTAAACCTTCTGAAAGGTTACGGTTTATTCGTTGTATTTACAGCTTATTACAATCTAGTAGTGCTGCTGTGCGCTAT ]
[+] EMBL CD125427 [ ACGAAATGCAGTGCTGGCAATTTTTACGATATACAAAAACTTCGAATCGCTTATTCCGGATGCACCTGAGAAAATTCTAAGATTCCTCGAACAAGAGCAAGATTCTTCTTGCAAAAGGAATGCTTTTATGATGTTGCTTCATGTCAGTCAGAGTACTGCTCTTGATTATCTTACTTCTTGTTTGGATGTAGTACAAAATTTCGGTGATATTCTTCAGCTCATAATTGTAGAGTTAATCTACAAAGTATGTCTCGCTAAACCTTCTGAAAGGTTACGGTTTATTCGTTGTATTTACAGCTTATTACAATCTAGTAGTGCTGCTGTGCGCTATGAAGCTGCAGGGACGCTGACAACACTAAGTTCTGCTCCTAGTGCCATTAAGGCAGCCGCAAGTTGTTACATTAATTTAATCCTGAAAGAAAGTGACAACAATGTAAAACTAATTGTATTGTCACGTCTCACTGATTTACGTCAGTATCATGAGCGTATTCTACAGGACCTAATTATGGATATCGTGCAGATCATANATGCATCTGATATGGAAGTTCGTCAGAAAACACTTAATTTAACGATGGATTTAGTGACAGCTCGTACAGCTGAAGAATTGATTAAGATATTTCGTAAGGAACTT]
consensusID : consensus_7867#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence
[ATTGCACGCGGGTTACTAGTATGTGATGCTTATCGCAAAGATTTACAACACCCTAGGTGAATTCATCCGTGGGTCAACTTTACGATTTCTGTGTAAATTAAAAGAACCTGAATTACTGGAGCCTATTATGCCATCTATTCAACAGTGTCTGGAACATCGACATGCATATGTTCGACGAAATGCAGTGCTGGCAATTTTTACGATATACAAAAACTTCGAATCGCTTATTCCGGATGCACCTGAGAAAATTCTAAGATTCCTCGAACAAGAGCAAGATTCTTCTTGCAAAAGGAATGCTTTTATGATGTTGCTTCATGTCAGTCAGAGTACTGCTCTTGATTATCTTACTTCTTGTTTGGATGAAGTACAAAATTTCGGTGATATTCTTCAGCTCATAATTGTAGAGTT]
[+] EMBL CD191269 [ATTGCACGCGGGTTACTAGTATGTGATGCTTATCGCAAAGATTTACAACACCCTAGGTGAATTCATCCGTGGGTCAACTTTACGATTTCTGTGTAAATTAAAAGAACCTGAATTACTGGAGCCTATTATGCCATCTATTCAACAGTGTCTGGAACATCGACATGCATATGTTCGACGAAATGCAGTGCTGGCAATTTTTACGATATACAAAAACTTCGAATCGCTTATTCCGGATGCACCTGAGAAAATTCTAAGATTCCTCGAACAAGAGCAAGATTCTTCTTGCAAAAGGAATGCTTTTATGATGTTGCTTCATGTCAGTCAGAGTACTGCTCTTGATTATCTTACTTCTTGTTTGGATGAAGTACAAAATTTCGGTGATATTCTTCAGCTCATAATTGTAGAGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7867#0 ATTCGCGTTACGTCATCGACGTGTTAAGGCTGGTTCAAGAAGTATGGCTAGTGATCAAAT 60
consensus_7867#1 ------------------------------------------------------------
consensus_7867#0 ATGTTATACTTTAGTCGGTTTGTCATCTGAAACAAAAACATATACTGAGCAAAAACTCAA 120
consensus_7867#1 ------------------------------------------------------------
consensus_7867#0 AGACGATTTGCAGAACAGCAATGATAATGTGAAAAGAGAGGCACTTAAGGAACTCATTCG 180
consensus_7867#1 ------------------------------------------------------------
consensus_7867#0 GCTAATTATTAATGGCGAGAAGTTCCCAAATTTATTAATGACTGTGATTCGCTTTGTTAT 240
consensus_7867#1 ------------------------------------------------------------
consensus_7867#0 GCCGTCACAGGATCACATGATTAAAAAGTTGTTGCTTTTATTCTGGGAAGTTGTGCCTAA 300
consensus_7867#1 ------------------------------------------------------------
consensus_7867#0 GTACAGTTCAGACGGGAAACTGCTCCATGAAATGATACTAGTATGTGATGCTTATCGCAA 360
consensus_7867#1 ---------------------ATTGCACGCGG-GTTACTAGTATGTGATGCTTATCGCAA 38
* ** * * *************************
consensus_7867#0 AGATTTACAACACCCTAA-TGAATTCATCCGTGGGTCAACTTTACGATTTCTGTGTAAAT 419
consensus_7867#1 AGATTTACAACACCCTAGGTGAATTCATCCGTGGGTCAACTTTACGATTTCTGTGTAAAT 98
***************** *****************************************
consensus_7867#0 TAAAAGAACCTGAATTACTGGAGCCTATTATGCCATCTATTCAACAGTGTCTGGAACATC 479
consensus_7867#1 TAAAAGAACCTGAATTACTGGAGCCTATTATGCCATCTATTCAACAGTGTCTGGAACATC 158
************************************************************
consensus_7867#0 GACATGCATATGTTCGACGAAATGCAGTGCTGGCAATTTTTACGATATACAAAAACTTCG 539
consensus_7867#1 GACATGCATATGTTCGACGAAATGCAGTGCTGGCAATTTTTACGATATACAAAAACTTCG 218
************************************************************
consensus_7867#0 AATCGCTTATTCCGGATGCACCTGAGAAAATTCTAAGATTCCTCGAACAAGAGCAAGATT 599
consensus_7867#1 AATCGCTTATTCCGGATGCACCTGAGAAAATTCTAAGATTCCTCGAACAAGAGCAAGATT 278
************************************************************
consensus_7867#0 CTTCTTGCAAAAGGAATGCTTTTATGATGTTGCTTCATGTCAGTCAGAGTACTGCTCTTG 659
consensus_7867#1 CTTCTTGCAAAAGGAATGCTTTTATGATGTTGCTTCATGTCAGTCAGAGTACTGCTCTTG 338
************************************************************
consensus_7867#0 ATTATCTTACTTCTTGTTTGGATGAAGTACAAAATTTCGGTGATATTCTTCAGCTCATAA 719
consensus_7867#1 ATTATCTTACTTCTTGTTTGGATGAAGTACAAAATTTCGGTGATATTCTTCAGCTCATAA 398
************************************************************
consensus_7867#0 TTGTAGAGTTAATCTACAAAGTATGTCTCGCTAAACCTTCTGAAAGGTTACGGTTTATTC 779
consensus_7867#1 TTGTAGAGTT-------------------------------------------------- 408
**********
consensus_7867#0 GTTGTATTTACAGCTTATTACAATCTAGTAGTGCTGCTGTGCGCTATGAAGCTGCAGGGA 839
consensus_7867#1 ------------------------------------------------------------
consensus_7867#0 CGCTGACAACACTAAGTTCTGCTCCTAGTGCCATTAAGGCAGCCGCAAGTTGTTACATTA 899
consensus_7867#1 ------------------------------------------------------------
consensus_7867#0 ATTTAATCCTGAAAGAAAGTGACAACAATGTAAAACTAATTGTATTGTCACGTCTCACTG 959
consensus_7867#1 ------------------------------------------------------------
consensus_7867#0 ATTTACGTCAGTATCATGAGCGTATTCTACAGGACCTAATTATGGATATCGTGCAGATCA 1019
consensus_7867#1 ------------------------------------------------------------
consensus_7867#0 TANATGCATCTGATATGGAAGTTCGTCAGAAAACACTTAATTTAACGATGGATTTAGTGA 1079
consensus_7867#1 ------------------------------------------------------------
consensus_7867#0 CAGCTCGTACAGCTGAAGAATTGATTAAGATATTTCGTAAGGAACTT 1126
consensus_7867#1 -----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||