These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7870#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [AGTTATTGTAAGTAAAATTAAAATGGAATAAATTTTCTAAATTACATACTGCCATTATCATTATATTCTCATTTTCTTTTTGAAAATAGAGAAGTAAACAGACTTTTTTATTTAAATAATAAAATAATATAGAGTTTAATAATAAATCAATTTTCTATCCTATGGGCTAATATATATACATAGCAACTTTCCATTACCCAATTAAAGTTCTTGATTTTGTTGGTAAACATTTATATTGGGTAAATTTGTAGTTGTAAACAACATATAAAACTGCTCCAATAGTACTTATAGTAAGGCCAGCGAAATTTAGGCTCGTATACACATAGTCACCACCAACAAACATCCCACCATAGGTTACCAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAAAAGTATATTGAGTACATTGAACAAAAGTATAAT] [+] EMBL CD072982 [AGTTATTGTAAGTAAAATTAAAATGGAATAAATTTTCTAAATTACATACTGCCATTATCATTATATTCTCATTTTCTTTTTGAAAATAGAGAAGTAAACAGACTTTTTTATTTAAATAATAAAATAATATAGAGTTTAATAATAAATCAATTTTCTATCCTATGGGCTAATATATATACATAGCAACTTTCCATTACCCAATTAAAGTTCTTGATTTTGTTGGTAAACATTTATATTGGGTAAATTTGTAGTTGTAAACAACATATAAAACTGCTCCAATAGTACTTATAGTAAGGCCAGCGAAATTTAGGCTCGTATACACATAGTCACCACCAACAAACATCCCACCATAGGTTACCAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAAAAGTATATTGAGTACATTGAACAAAAGTATAAT] consensusID : consensus_7870#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 413 fasta sequence [TCCGTTTTGTAAGTAAATTAAATGATAATTTCTAAATTCCTACTGCCCTATCATAAATCCCATTTCCTTTGAAAATGGAAGTAAACCGACTTTTTATTAAATAATAAAATATATAGGGTTTAATAATAAATCAATTTTCTATCTATGTCTAATATATATACATAGCAACTTTCCATTAGCCAATTAAAGTTCTTGATTTTGTTGGTAAACATTTATATTGTGTAGATTTGTAGTTGTAAACAACATATAAGACTGCTCCAATAGTACTTATAGTAAGGCCAGCGAAATTTAGGCTCGTATACACATAGTCACCACCAACAAACATCCCACCATAGGTTACCAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAGAAGTATATTGAGTACATTGAACAAGAGTA] [-] EMBL AI764930 [TCCGTTTTGTAAGTAAATTAAATGATAATTTCTAAATTCCTACTGCCCTATCATAAATCCCATTTCCTTTGAAAATGGAAGTAAACCGACTTTTTATTAAATAATAAAATATATAGGGTTTAATAATAAATCAATTTTCTATCTATGTCTAATATATATACATAGCAACTTTCCATTAGCCAATTAAAGTTCTTGATTTTGTTGGTAAACATTTATATTGTGTAGATTTGTAGTTGTAAACAACATATAAGACTGCTCCAATAGTACTTATAGTAAGGCCAGCGAAATTTAGGCTCGTATACACATAGTCACCACCAACAAACATCCCACCATAGGTTACCAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAGAAGTATATTGAGTACACTGAACAAGAGTA] [-] EMBL AI021767 [ TCCATTAGCCAATTAAAGTTCTTGATTTTGTTGGTAAACATTTATATTGTGTAGATTTGTAGTTGTAAACAACATATAAGACTGCTCCAATAGTACTTATAGTAAGGCCAGCGAAATTTAGGCTCGTATA ACATAGTCACCACCAACAAACATCCCACCATAGGTTACCAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAGAAGTATATTGAGTACATTGAACAAGAGTA] [-] EMBL BF440134 [ nTTCCTGATTTTGTTGGTAAANATTTATATTGTGTAGATTTGTAGTTGTAAACAACATATAAGACTGCTCCAATAGTACTTATAGTAAGGCCAGCGAAATTTAGGCTCGTATACACATAGTCACCACCAACAAACATCCCACCATAGGTTACCAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAGAAGTA ] [-] EMBL AI021766 [ TGCTCCAATAGTACTTATAGTAAGGCCAGCGAAATTTAGGCTCGTATACACATAGTCACCACCAACAAACATCCCACCATAGGTTACCAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAGAAGTATATTGAGTACATTGAACAAGAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7870#0 --AGTTATTGTAAGTAAAATTAAAATGGAATAAATTTTCTAAATTACATACTGCCATTAT 58 consensus_7870#1 TCCGTT-TTGTAAGTAAATT--AAATG--ATAA--TTTCTAAATTCC-TACTGCC-CTAT 51 *** *********** * ***** **** ********** * ******* *** consensus_7870#0 CATTATATTCTCATTTTCTTTTTGAAAATAGAGAAGTAAACAGACTTTTTTATTTAAATA 118 consensus_7870#1 CATAA--ATCCCATTTCCTTT--GAAAATGGA--AGTAAACCGACTTTTTA--TTAAATA 103 *** * ** ***** **** ****** ** ******* ******** ******* consensus_7870#0 ATAAAATAATATAGAGTTTAATAATAAATCAATTTTCTATCCTATGGGCTAATATATATA 178 consensus_7870#1 ATAAAATA-TATAGGGTTTAATAATAAATCAATTTTCTATC-TATGT-CTAATATATATA 160 ******** ***** ************************** **** ************ consensus_7870#0 CATAGCAACTTTCCATTACCCAATTAAAGTTCTTGATTTTGTTGGTAAACATTTATATTG 238 consensus_7870#1 CATAGCAACTTTCCATTAGCCAATTAAAGTTCTTGATTTTGTTGGTAAACATTTATATTG 220 ****************** ***************************************** consensus_7870#0 GGTAAATTTGTAGTTGTAAACAACATATAAAACTGCTCCAATAGTACTTATAGTAAGGCC 298 consensus_7870#1 TGTAGATTTGTAGTTGTAAACAACATATAAGACTGCTCCAATAGTACTTATAGTAAGGCC 280 *** ************************* ***************************** consensus_7870#0 AGCGAAATTTAGGCTCGTATACACATAGTCACCACCAACAAACATCCCACCATAGGTTAC 358 consensus_7870#1 AGCGAAATTTAGGCTCGTATACACATAGTCACCACCAACAAACATCCCACCATAGGTTAC 340 ************************************************************ consensus_7870#0 CAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAAAAGTATATTGAGTACA 418 consensus_7870#1 CAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAGAAGTATATTGAGTACA 400 ******************************************* **************** consensus_7870#0 TTGAACAAAAGTATAAT 435 consensus_7870#1 TTGAACAAGAGTA---- 413 ******** **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||