These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7871#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 660 fasta sequence [CACCTTTTATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCCTGTATTCAACTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAATCAGAACTGATAAAAATGCCAGGAAAAATGCAGAGTTTGACTTTTCTCAACTAAATATTGCTGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAATGCAATTGACAGGCTACAAAAAGATATACTGGCCACACCTCAACAAGATCCAAAACTGGATAGTCAGCTTACAGAGCTCACCAATTCCATCCGAGAAAGTGCTCATAAAATTCAGAGTTCTTTGAAAGAACTAGGGCAACAGGAAGATGACAAACTTCTGTCAGGATTATCTGGTAAATCTCGTCTAAAGTCGTCTCAGCATGCTGCTATTTCTCGACAATTCGTTCACATTATGAACAATTATAGTCAATTACAAGTAGATTATCGTGACAAGTGTAAGGCTCGAATTCGAACCAAACTCCGTATCGCTGAAGTTCCATTTTCAGAAGATGAAGTTGAGAAGATGTTAGAAAAAAACCATACGGGTATTTTCACACAGGCTATAATGGCTGAAACAGAAGCTGCANAGCGATCA] [+] EMBL CD082025 [CACCTTTTATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCCTGTATTCAACTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAATCAGAACTGATAAAAATGCCAGGAAAAATGCAGAGTTTGACTTTTCTCAACTAAATATTGCTGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAATGCAATTGACAGGCTACAAAAAGATATACTGGCCACACCTCAACAAGATCCAAAACTGGATAGTCAGCTTACAGAGCTCACCAATTCCATCCGAGAAAGTGCTCATAAAATTCAGAGTTCTTTGAAAGAACTAGGGCAACAGGAAGATGACAAACTTCTGTCAGGATTATCTGGTAAATCTCGTCTAAAGTCGTCTCAGCATGCTGCTATTTCTCGACAATTCGTTCACATTATGAACAATTATAGTCAATTACAAGTAGATTATCGTGACAAGTGTAAGGCTCGAATTCGAACCAAACTCCGTATCGCTGAAGTTCCATTTTCAGAAGATGAAGTTGAGAAGATGTTAGAAAAAAACCATACGGGTATTTTCACACAGGCTATAATGGCTGAAACAGAAGCTGCANAGCGATCA] [+] EMBL CD078046 [ CTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAATCAGAACTGATAAAAATGCCAGGAAAAATGCAGAGTTTGACTTTTCTCAACTAAATATTGCTGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAATGCAATTGACAGGCTACAAAAAGATATACTGGCCACACCTCAACAAGATCCAAAACTGGATAGTCAGCTTACAGAGCTCACCATTTCCATCCG ] consensusID : consensus_7871#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 541 fasta sequence [AATAGGGTTACCGTCCGAGTGCCTTCATGACTAAAAGTCGCTTGGCGACCGAATCCCGGTTGTGTAGAATATTTTTGTGCACTCTATCACTAGTAGTAAGCGCGCTACTAGCGTGTCGTAATCTGGTGAATTAGAAAACATTTGTAGTATAATAAACGTTCTGAGAGTAACAGGCACCTTTTCATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCCTGTATTCAACTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAATCAGAACTGATAAAAATGCCAGGAAAAATGCAGAGTTTGACTTTTCTCAACTAAATATTGCTGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAATGCAATTGACAGGCTACAAAAAGATATACTGGCCACACCCCAACAAGATCCAAGTAATGTTATTTATTCTTTTACGGTTTAAGAACTGGATAGTCAGCTTACAGAGCTCACCTTCCATCTG] [-] EMBL CD178380 [AATAGGGTTACCGTCCGAGTGCCTTCATGACTAAAAGTCGCTTGGCGACCGAATCCCGGTTGTGTAGAATATTTTTGTGCACTCTATCACTAGTAGTAAGCGCGCTACTAGCGTGTCGTAATCTGGTGAATTAGAAAACATTTGTAGTATAATAAACGTTCTGAGAGTAACAGGCACCTTTTCATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCCTGTATTCAACTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAATCAGAACTGATAAAAATGCCAGGAAAAATGCAGAGTTTGACTTTTCTCAACTAAATATTGCTGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAATGCAATTGACAGGCTACAAAAAGATATACTGGCCACACCCCAACAAGATCCAAGTAATGTTATTTATTCTTTTACGGTTTAAGAACTGGATAGTCAGCTTACAGAGCTCACCTTCCATCTG] [-] EMBL CD190193 [AATAGGGTTACCGTCCGAGTGCCTTCATGACTAAAAGTCGCTTGGCGACCGAATCCCGGTTGTGTAGAATATTTTTGTGCACTCTATCACTAGTAGTAAGCGCGCTACTAGCGTGTCGTAATCTGGTGAATTAGAAAACATTTGTAGTATAATAAACGTTCTGAGAGTAACAGGCACCTTTTCATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCCTGTATTCAACTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAATCAGAACTG ] consensusID : consensus_7871#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [TACCGTCCGAGTGCCTTCATGACTAAAAGTCGCTTGGCGACCGAATCCCGGTTGTGTAGAATATTTTTGTGCACTCTATCACTAGTAATAATAAACGTTCTGAGAGTAACAGGCACCTTTTCATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCCTGTATTCAACTTTTGGATGGGTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAATCAGAACTGATAAAAATGCCAGGAAAAATGCAGAGGTTGACTTTTCTCAACTAAATATTGCTGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAATGCAATT] [+] EMBL AI975139 [TACCGTCCGAGTGCCTTCATGACTAAAAGTCGCTTGGCGACCGAATCCCGGTTGTGTAGAATATTTTTGTGCACTCTATCACTAGTAATAATAAACGTTCTGAGAGTAACAGGCACCTTTTCATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCCTGTATTCAACTTTTGGATGGGTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAATCAGAACTGATAAAAATGCCAGGAAAAATGCAGAGGTTGACTTTTCTCAACTAAATATTGCTGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAATGCAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7871#1 AATAGGGTTACCGTCCGAGTGCCTTCATGACTAAAAGTCGCTTGGCGACCGAATCCCGGT 60 consensus_7871#2 --------TACCGTCCGAGTGCCTTCATGACTAAAAGTCGCTTGGCGACCGAATCCCGGT 52 consensus_7871#0 ------------------------------------------------------------ consensus_7871#1 TGTGTAGAATATTTTTGTGCACTCTATCACTAGTAGTAAGCGCGCTACTAGCGTGTCGTA 120 consensus_7871#2 TGTGTAGAATATTTTTGTGCACTCTATCACTAGTA------------------------- 87 consensus_7871#0 ------------------------------------------------------------ consensus_7871#1 ATCTGGTGAATTAGAAAACATTTGTAGTATAATAAACGTTCTGAGAGTAACAGGCACCTT 180 consensus_7871#2 ----------------------------ATAATAAACGTTCTGAGAGTAACAGGCACCTT 119 consensus_7871#0 ------------------------------------------------------CACCTT 6 ****** consensus_7871#1 TTCATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCC 240 consensus_7871#2 TTCATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCC 179 consensus_7871#0 TT-ATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCC 65 ** ********************************************************* consensus_7871#1 TGTATTCAACTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAAT 300 consensus_7871#2 TGTATTCAACTTTTGGATGGGTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAAT 239 consensus_7871#0 TGTATTCAACTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAAT 125 ******************** *************************************** consensus_7871#1 CAGAACTGATAAAAATGCCAGGAAAAATGCAGAGTTTGACTTTTCTCAACTAAATATTGC 360 consensus_7871#2 CAGAACTGATAAAAATGCCAGGAAAAATGCAGAGGTTGACTTTTCTCAACTAAATATTGC 299 consensus_7871#0 CAGAACTGATAAAAATGCCAGGAAAAATGCAGAGTTTGACTTTTCTCAACTAAATATTGC 185 ********************************** ************************* consensus_7871#1 TGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAA 420 consensus_7871#2 TGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAA 359 consensus_7871#0 TGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAA 245 ************************************************************ consensus_7871#1 TGCAATTGACAGGCTACAAAAAGATATACTGGCCACACCCCAACAAGATCCAAGTAATGT 480 consensus_7871#2 TGCAATT----------------------------------------------------- 366 consensus_7871#0 TGCAATTGACAGGCTACAAAAAGATATACTGGCCACACCTCAACAAGATCCAAAACTGGA 305 ******* consensus_7871#1 TATTTATTCTTTTACGGTTTAAGAACTGGAT-----AGTCAGCTTACAGAGCTCACCTTC 535 consensus_7871#2 ------------------------------------------------------------ consensus_7871#0 TAGTCAG-CTTACAGAGCTCACCAATTCCATCCGAGAAAGTGCTCATAAAATTCAGAGTT 364 consensus_7871#1 CATCTG------------------------------------------------------ 541 consensus_7871#2 ------------------------------------------------------------ consensus_7871#0 CTTTGAAAGAACTAGGGCAACAGGAAGATGACAAACTTCTGTCAGGATTATCTGGTAAAT 424 consensus_7871#1 ------------------------------------------------------------ consensus_7871#2 ------------------------------------------------------------ consensus_7871#0 CTCGTCTAAAGTCGTCTCAGCATGCTGCTATTTCTCGACAATTCGTTCACATTATGAACA 484 consensus_7871#1 ------------------------------------------------------------ consensus_7871#2 ------------------------------------------------------------ consensus_7871#0 ATTATAGTCAATTACAAGTAGATTATCGTGACAAGTGTAAGGCTCGAATTCGAACCAAAC 544 consensus_7871#1 ------------------------------------------------------------ consensus_7871#2 ------------------------------------------------------------ consensus_7871#0 TCCGTATCGCTGAAGTTCCATTTTCAGAAGATGAAGTTGAGAAGATGTTAGAAAAAAACC 604 consensus_7871#1 -------------------------------------------------------- consensus_7871#2 -------------------------------------------------------- consensus_7871#0 ATACGGGTATTTTCACACAGGCTATAATGGCTGAAACAGAAGCTGCANAGCGATCA 660 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||