|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7872#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1126 fasta sequence
[AGAGTTCAAAATATTAGCAAATGTCGTTGACATTATGCGGAGAAAGAAACAGAGAGCCAATTTGAATTATTCAGAAGCCGAAGAATTTGTCGTTAAACAAATGAATAAAATACTGGAAAAATACTCGTTTAAATACAGTGCCAGTTTCCAAGATATGCATGTGGAGGTGCTCAAAGAATTACAGAAAATTCCAAAAATTACGGAGTATCCATCGACTGCGACAGTCATTGAAGACTCATTTTTTTCCACAAAATATATGGAGAAATTAATGAAGGAAATGTAGGTATTCGTCATTTTTTGAATGAACAGATTTTGTTTGATTGATGTTTTTGAAAAATTGGCAGAAGAAATTCAAAATACGGGGTCGTGTGATACATTGCAACAGTCAGTTGACAAAGAAGAATCAGAATTCAAAGAGATAGAACATATCCTGGAAAGAGAACGTAAAGCACGTGAAAAAATCAAGGAACTAAAACATAAGATTCAAGAAAAGAATGAGGAAGGTATAAAAATCATTGAACAAGGCANAGAAACTATAGCAGATTTAAAAGATCAAGTTCAAGAAATGAAAGCTAAAATAATTATGGAAGAAAAATATATAACACGTTATTCTGCCGTANAATTGGAAGAATTCCAAAGTCAGTGTGATCAAAAAGAAAATGAAATCAAACATCAAATGGATTTGGTTCAATCAAATCGTAGCACAGAAGAACGAGTTCATGCGGAGATTACATCTTACTTAAATGATCGTATATCATACTTAAGAAAGCATGAAGAATTCTGGAAAGAGAAGTCTGACAAAGATATTACTCAATTCAAACAAGAGCTAAATCAGCTTAAAGACAAAAAACAAAATAACTTAAGTAAACTTAATGAATTATCTTTATTGTATAAAGAATATGAAGCCGTGGTTCTGTCCGATCGAATTGAAAAAGAGAAAGCTCGTCAAAGAGAAGAACAAGAAGAGTTGGAACTATTTGCAGCTTGTAAAATAGAAATTAGGGTTGTCTAACATTCAAAAGTATTGAAACAATTTACAATGTCCAAATATTCAAAATTGGTGGCGTACTGTTTGCGTTCAGCATAATCTTGGTCCATATGGGAAAAAGAAGAGAAAAGGGAAAGG]
[+] EMBL CD078517 [AGAGTTCAAAATATTAGCAAATGTCGTTGACATTATGCGGAGAAAGAAACAGAGAGCCAATTTGAATTATTCAGAAGCCGAAGAATTTGTCGTTAAACAAATGAATAAAATACTGGAAAAATACTCGTTTAAATACAGTGCCAGTTTCCAAGATATGCATGTGGAGGTGCTCAAAGAATTACAGAAAATTCCAAAAATTACGGAGTATCCATCGACTGCGACAGTCATTGAAGACTCATTTTTTTCCACAAAATATATGGAGAAATTAATGAAGGAAATGTAGGTATTCGTCATTTTTTGAATGAACAGATTTTGTTTGATTGATGTTTTTGAAAAATTGGCAGAAGAAATTCAAAATACGGGGTCGTGTGATACATTGCAACAGTCAGTTGACAAAGAAGAATCAGAATTCAAAGAGATAGAACATATCCTGGAAAGAGAACGTAAAGCACGTGAAAAAATCAAGGAACTAAAACATAAGATTCAAGAAAAGAATGAGGAAGGTATAAAAATCATTGAACAAGGCANAGAAACTATAGCAGATTTAAAAGATCAAGTTCAAGAAATGAAAGCTTAAATAATTATGGAAG AAAATATATAACACGTT ]
[-] EMBL CD190711 [ TAGGTATTCGTCATTTTTTGAATGAACAGATTTTGTTTGATTGATGTTTTTGAAAAATTGGCAGAAGAAATTCAAAATACGGGGTCGTGTGATACATTGCAACAGTCAGTTGACAAAGAAGAATCAGAATTCAAAGAGATAGAACATATCCTGGAAAGAGAACGTAAAGCACGTGAAAAAATCAAGGAACTAAAACATAAGATTCAAGAAAAGAATGAGGAAGGTATAAAAATCATTGAACAAGGCAAAGAAACTATAGCAGATTTAAAAGATCAAGTTCAAGAAATGAAAGCTAAAATAATTATGGAAGAAAAATATACAACACGTTATTCTGCCG ]
[-] EMBL CD072986 [ ACTATAGCAGATTTAAAAGATCAAGTTCAAGAAATGAAAGCTAAAATAATTATGGAAGAAAAATATATAACACGTTATTCTGCCGTANAATTGGAAGAATTCCAAAGTCAGTGTGATCAAAAAGAAAATGAAATCAAACATCAAATGGATTTGGTTCAATCAAATCGTAGCACAGAAGAACGAGTTCATGCGGAGATTACATCTTACTTAAATGATCGTATATCATACTTAAGAAAGCATGAAGAATTCTGGAAAGAGAAGTCTGACAAAGATATTACTCAATTCAAACAAGAGCTAAATCAGCTTAAAGACAAAAAACAAAATAACTTAAGTAAACTTAATGAATTATCTTTATTGTATAAAGAATATGAAGCCGTGGTTCTGTCCGATCGAATTGAAAAAGAGAAAGCTCGTCAAAGAGAAGAACAAGAAGAGTTGGAACTATTTGCAGCTTGTAAAATAGAAATTAGGGTTGTCTAACATTCAAAAGTATTGAAACAATTTACAATGTCCAAATATTCAAAATTGGTGGCGTACTGTTTGCGTTCAGCATAATCTTGGTCCATATGGGAAAAAGAAGAGAAAAGGGAAAGG]
consensusID : consensus_7872#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence
[GTTATTTCTGCCGTAAAATTGGAAGAATTCCAAAGTCAGTGTGATCAAAAAGAAAATGAAATCAAACATCAAATGGATTTGGTTCAATCAAATCGTAGCACAGAAGAACGAGTTCATGCGGAGATTACATCTTACTTAAATGATCGTATATCATACTTAAGAAAGCATGAAGAATTCTGGAAAGAGAAGTCTGACAAAGATATTACTCAATTCAAACAAGAGCTAAATCAGCTTAAAGACAAAAAACAAAATAACTTAAGTAAACTTAATGAATTATCTTTATTGTATAAAGAATATGAAGCCGTGGTTCTGTCCGATCGAATTGAAAAAGAGAAAGCTCGTCAAAGAGAAGAACAAGAAGAGTTGGAACTATTTGCAGCTTGTAAAATTCAAAATTGGTGGCGTACTGTTTGCGTTCAGCATAATCTTGGTCCATATGGGAAAAAGAAGAGAAAAGGGAAAGGTTCGAAGCCAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]
[-] EMBL AI977485 [GTTATTTCTGCCGTAAAATTGGAAGAATTCCAAAGTCAGTGTGATCAAAAAGAAAATGAAATCAAACATCAAATGGATTTGGTTCAATCAAATCGTAGCACAGAAGAACGAGTTCATGCGGAGATTACATCTTACTTAAATGATCGTATATCATACTTAAGAAAGCATGAAGAATTCTGGAAAGAGAAGTCTGACAAAGATATTACTCAATTCAAACAAGAGCTAAATCAGCTTAAAGACAAAAAACAAAATAACTTAAGTAAACTTAATGAATTATCTTTATTGTATAAAGAATATGAAGCCGTGGTTCTGTCCGATCGAATTGAAAAAGAGAAAGCTCGTCAAAGAGAAGAACAAGAAGAGTTGGAACTATTTGCAGCTTGTAAAATTCAAAATTGGTGGCGTACTGTTTGCGTTCAGCATAATCTTGGTCCATATGGGAAAAAGAAGAGAAAAGGGAAAGGTTCGAAGCCAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]
consensusID : consensus_7872#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence
[GTGGAGGTGCTCAAAGAATTACAGAAAATTCCAAAAATTACGGAGTATCCATCGACTGCGACAGTCATTGAAGACTCATTTTTTTCCACAAAATATATGGAGAAATTAATGAAGGAAATATTTTGTTTGATTGATGTTTTTGAAAAATTGGCAGAAGAAATTCAAAATACGGGGTCGTGTGATACATTGCAACAGTCAGTTGACA]
[+] EMBL CD195686 [GTGGAGGTGCTCAAAGAATTACAGAAAATTCCAAAAATTACGGAGTATCCATCGACTGCGACAGTCATTGAAGACTCATTTTTTTCCACAAAATATATGGAGAAATTAATGAAGGAAATATTTTGTTTGATTGATGTTTTTGAAAAATTGGCAGAAGAAATTCAAAATACGGGGTCGTGTGATACATTGCAACAGTCAGTTGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7872#0 AGAGTTCAAAATATTAGCAAATGTCGTTGACATTATGCGGAGAAAGAAACAGAGAGCCAA 60
consensus_7872#2 ------------------------------------------------------------
consensus_7872#1 -------------------------------------------GTTATTTCTGCCGTAAA 17
consensus_7872#0 TTTGAATTATTCAGAAGCCGAAGAATTTGTCGTTAAACAAATGAATAAAATACTGGAAAA 120
consensus_7872#2 ------------------------------------------------------------
consensus_7872#1 ATTGGAAGAATTCCAAAGTCAGTGTGATCAAAAAGAAAATGAAATCAAACATCAAATGGA 77
consensus_7872#0 ATACTCGTTTAAATACAGTGCCAGTTTCCAAGATATGCATGTGGAGGT--------GCTC 172
consensus_7872#2 ----------------------------------------GTGGAGGT--------GCTC 12
consensus_7872#1 TTTGGTTCAATCAAATCGTAGCACAGAAGAACGAGTTCATGCGGAGATTACATCTTACTT 137
* **** * **
consensus_7872#0 AAAGAATTACAGA--AAATTCCAAAAATTACGGAGTATCCATCGACTGCGACAGTCATTG 230
consensus_7872#2 AAAGAATTACAGA--AAATTCCAAAAATTACGGAGTATCCATCGACTGCGACAGTCATTG 70
consensus_7872#1 AAATGATCGTATATCATACTTAAGAAAGCATGAAGAATTC-TGGAAAGAGAAGTCTGACA 196
*** ** * * * * * * *** * * ** ** * * ** * **
consensus_7872#0 AAGACTCATTTTTTTCCACAAAATATATGGAGAAATTAATGAAGGAAATGTAGGTATTCG 290
consensus_7872#2 AAGACTCATTTTTTTCCACAAAATATATGGAGAAATTAATGAAGGAAAT----------- 119
consensus_7872#1 AAGATATTACTCAATTCAAACAAGAGCTAAATCAGCTTAAAGACAAAAAACAAAATAACT 256
**** * * ** * ** * * * * * * * ***
consensus_7872#0 TCATTTTTTGAATGAACAGATTTTGTTTGATTGATGTTTTTGAAAAATTGG------CAG 344
consensus_7872#2 -------------------ATTTTGTTTGATTGATGTTTTTGAAAAATTGG------CAG 154
consensus_7872#1 TAAGTAAACTTAATGAATTATCTTTATTGTATAAAGAATATGAAGCCGTGGTTCTGTCCG 316
** ** *** * * * * **** *** * *
consensus_7872#0 AAGAAATTCAAAATACGGGGTCGTGTGATACATTGCAACAGTCAG--TTGACAAAGAAGA 402
consensus_7872#2 AAGAAATTCAAAATACGGGGTCGTGTGATACATTGCAACAGTCAG--TTGACA------- 205
consensus_7872#1 ATCGAATTGAAAAAGAGAAAGCTCGTCAAAGAGAAGAACAAGAAGAGTTGGAACTATTTG 376
* **** **** * * ** * * * **** ** *** *
consensus_7872#0 ATCAGAATTCAAAGAGATAGAACATATCCTGGAAAGAGAACGTAAAGCACGTGAAAAAAT 462
consensus_7872#2 ------------------------------------------------------------
consensus_7872#1 CAGCTTGTAAAATTCAAAATTGGTGGCGTACTGTTTGCGTTCAGCATAATCTTGGTCCAT 436
consensus_7872#0 CAAGGAACTAAAACATAAGATTCAAGAAAAGAATGAGGAAGGTATAAAAATCATTGAACA 522
consensus_7872#2 ------------------------------------------------------------
consensus_7872#1 ATGGGAAAAAGAAGAGAAAAGGGAAAGGTTCGAAGCCAAAAAAAAAAAAAAAAAAAAAAA 496
consensus_7872#0 AGGCANAGAAACTATAGCAGATTTAAAAGATCAAGTTCAAGAAATGAAAGCTAAAATAAT 582
consensus_7872#2 ------------------------------------------------------------
consensus_7872#1 AAACATGCCATGCAGCTGCATTACCGTACTGCGTA------------------------- 531
consensus_7872#0 TATGGAAGAAAAATATATAACACGTTATTCTGCCGTANAATTGGAAGAATTCCAAAGTCA 642
consensus_7872#2 ------------------------------------------------------------
consensus_7872#1 ------------------------------------------------------------
consensus_7872#0 GTGTGATCAAAAAGAAAATGAAATCAAACATCAAATGGATTTGGTTCAATCAAATCGTAG 702
consensus_7872#2 ------------------------------------------------------------
consensus_7872#1 ------------------------------------------------------------
consensus_7872#0 CACAGAAGAACGAGTTCATGCGGAGATTACATCTTACTTAAATGATCGTATATCATACTT 762
consensus_7872#2 ------------------------------------------------------------
consensus_7872#1 ------------------------------------------------------------
consensus_7872#0 AAGAAAGCATGAAGAATTCTGGAAAGAGAAGTCTGACAAAGATATTACTCAATTCAAACA 822
consensus_7872#2 ------------------------------------------------------------
consensus_7872#1 ------------------------------------------------------------
consensus_7872#0 AGAGCTAAATCAGCTTAAAGACAAAAAACAAAATAACTTAAGTAAACTTAATGAATTATC 882
consensus_7872#2 ------------------------------------------------------------
consensus_7872#1 ------------------------------------------------------------
consensus_7872#0 TTTATTGTATAAAGAATATGAAGCCGTGGTTCTGTCCGATCGAATTGAAAAAGAGAAAGC 942
consensus_7872#2 ------------------------------------------------------------
consensus_7872#1 ------------------------------------------------------------
consensus_7872#0 TCGTCAAAGAGAAGAACAAGAAGAGTTGGAACTATTTGCAGCTTGTAAAATAGAAATTAG 1002
consensus_7872#2 ------------------------------------------------------------
consensus_7872#1 ------------------------------------------------------------
consensus_7872#0 GGTTGTCTAACATTCAAAAGTATTGAAACAATTTACAATGTCCAAATATTCAAAATTGGT 1062
consensus_7872#2 ------------------------------------------------------------
consensus_7872#1 ------------------------------------------------------------
consensus_7872#0 GGCGTACTGTTTGCGTTCAGCATAATCTTGGTCCATATGGGAAAAAGAAGAGAAAAGGGA 1122
consensus_7872#2 ------------------------------------------------------------
consensus_7872#1 ------------------------------------------------------------
consensus_7872#0 AAGG 1126
consensus_7872#2 ----
consensus_7872#1 ----
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||