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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7875#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 913 fasta sequence
[AAGACAACCGATTTGGAGTTTGATTATACTCACATTTTTAACTTGAATCAACTCGCGAAACTATCATCTGATGTCACCGGCAATATATATCACACTTCCATAGGCTTCCCATTTTATTAATATTAGGTTTGTAAGGTAATATATCAGTATTCCATTTTCCTACCTATTCAATTGAAGAAAGAATATAAGGATACCAAACAAAGAAATTGTTTGAAAGGATTCGAAACATATTTTCGATTACTTGTCTTTTTGAATTTACTTAAATATTTCTATTCAATATAAAAATTTTAAGGTTTTTTTTAATGAACTCTCTTCAGCCTCTAACTTGAACAACCAAAATATTGGATTGAATAGTTACACTAATACTTTGGCTTCCAGACCACGGATTAATGGCACATCTGTAGGAACTGGCAATAGTGTTGTTGCTGCCGCAATTTCAGCTGCTACCGCTGTAGCTGCAATGTCAGGTTCAGGAGTCGTCAATAATCATACTTTAAGTGGACTATGTCATTTACCAAGTTTACATTCCAGTAATTTATCGGGAAACAATTTAATTTTAAGTCAGAATAAGTCATCATTATCACCGTTATCATCATCTACAATATCTACAGTAACAACGACATCTATTCCATCGTTGTCATCGTCAGTCTCATCATCATCATCTGCAGCTCTAGTTAATCTTCTTAAAGCTCAACATCAACAACAGAATTTAGCGGCAGCCGCTACAGCTGTTGCTTTACAACAGCACAATCAATTGAATGGTACGAACAGTCAAAATACTCAAGCTATACTTGCTGCTCTTATGCTTCAAAATCTCAATACTCCTAATTAACTTATCAAACAATCTTTAAATGGTCTATCATTTCCATTAGAGAATGCCGTTTCAAATCTCGTGATTTTCCACCTAAACCAG]
[+] EMBL CD067126 [AAGACAACCGATTTGGAGTTTGATTATACTCACATTTTTAACTTGAATCAACTCGCGAAACTATCATCTGATGTCACCGGCAATATATATCACACTTCCATAGGCTTCCCATTTTATTAATATTAGGTTTGTAAGGTAATATATCAGTATTCCATTTTCCTACCTATTCAATTGAAGAAAGAATATAAGGATACCAAACAAAGAAATTGTTTGAAAGGATTCGAAACATATTTTCGATTACTTGTCTTTTTGAATTTACTTAAATATTTCTATTCAATATAAAAATTTTAAGGTTTTTTTTAATGAACTCTCTTCAGCCTCTAACTTGAACAACCAAAATATTGGATTGAATAGTTACACTAATACTTTGGCTTCCAGACCACGGATTAATGGCACATCTGTAGGAACTGGCAATAGTGTTGTTGCTGCCGCAATTTCAGCTGCTACCGCTGTAGCTGCAATGTCAGGTTCAGGAGTCGTCAATAATCATACTTTAAGTGGACTATGTCATTTACCAAGTTTACATTCCAGTAATTTATCGGGAAACAATTTA ]
[-] EMBL CD168058 [ ATCATACTTTAAGTGGACTATGTCATTTACCAAGTTTACATTCCAGTAATTTATCGGGTAACAATTTAATTTTAAGTCAGAATAAGTCATCATTATCACCGTTATCATCATCTACAATATCTACAGTAACAACGACATCTATTCCATCGTTGTCATCGTCAGTCTCATCATCATCATCTGCAGCTCTAGTTAATCTTCTTAAAGCTCAACATCAACAACAGAATTTAGCGGCAGCCGCTACAGCTGTTGCTTTACAACAGCACAATCAATTGAATGGTACGAACAGTCAAAATACTCAAGCTATACTTGCTGCTCTTATGCTTCAAAATCTCAATACTCCTAATTAACTTATCAAACAATCTTTAAATGGTCTATCATTTCCATTAGAGAATGCCGTTTCAAATCTCGTGATTTTCCACCTAAACCAG]
consensusID : consensus_7875#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence
[ATGGAGAGTTATGGTGGGCGGCTTATGCTCTTTCACGAGTGGTAACAGGTGTTAGTATGTATGTAAGATCATACACAAGTACTGTAATATATCTAATTGTTATTCAATATTATAAATGTCATGGAGATACATCATAATTCAATGATATTTTTGATATTACAAAGGAATTCAGCATAACCTTCATAAATTCACATGCATAAAACATAAACCATATTTAAAATGTTCACTTTATTTCATAGAGACAATTAAAACTGATTTCTTACGATAATAAACAACTCACTGTACACAAAACAAAATCATTATATAGCCTATCAGCTGTATTTAACCTTTAGCCAGTCATTTTCTCCAATGGTAAACAATTAAAATAAATTCGAAAACATCAATTAAAACACAATTCGTTCACCTAGTTATTAAAACGTTTTATCTAACTATATATGTACACAGACTTACAGACTATTTAAAGATTGTTTGATAAGTTGATTAGGAGTATTGAGATTTTGAAGCATAAGAGCAGCAAGTATAGCTTGAG]
[+] EMBL CD067233 [ATGGAGAGTTATGGTGGGCGGCTTATGCTCTTTCACGAGTGGTAACAGGTGTTAGTATGTATGTAAGATCATACACAAGTACTGTAATATATCTAATTGTTATTCAATATTATAAATGTCATGGAGATACATCATAATTCAATGATATTTTTGATATTACAAAGGAATTCAGCATAACCTTCATAAATTCACATGCATAAAACATAAACCATATTTAAAATGTTCACTTTATTTCATAGAGACAATTAAAACTGATTTCTTACGATAATAAACAACTCACTGTACACAAAACAAAATCATTATATAGCCTATCAGCTGTATTTAACCTTTAGCCAGTCATTTTCTCCAATGGTAAACAATTAAAATAAATTCGAAAACATCAATTAAAACACAATTCGTTCACCTAGTTATTAAAACGTTTTATCTAACTATATATGTACACAGACTTACAGACTATTTAAAGATTGTTTGATAAGTTGATTAGGAGTATTGAGATTTTGAAGCATAAGAGCAGCAAGTATAGCTTGAG]
consensusID : consensus_7875#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 394 fasta sequence
[GCTGCCGCAATTACAGCTGCTGCCGCTGTAGCTGCAATGTCAGGTTCAGGAGTCGTCAATAATCATACTTTAAGTGGACTATGTCATTTACCAAGTTTACATTCCAGTAATTTATCGGGAAACAATTTAATTTTAAGTCAGAATAAGTCATCATTATCACCGTTATCATCATCTACAATATCTACAGTAACAACGACATCTATTCCATCGTTGTCATCGTCAGTCTCATCATCATCATCTGCAGCTCTAGTTAATCTTTTTAAAGCTCAACATCAACAACAGAATTTAGCGGCAGCCGCTACAGCTGTTGCTTTACAACAGCACAATCAATTGAATGGTACGAACAGTCAAAATACTCAAGCTATACTTGCAACTCCACACGCCTCTCGGGTGA]
[-] EMBL CD166373 [GCTGCCGCAATTACAGCTGCTGCCGCTGTAGCTGCAATGTCAGGTTCAGGAGTCGTCAATAATCATACTTTAAGTGGACTATGTCATTTACCAAGTTTACATTCCAGTAATTTATCGGGAAACAATTTAATTTTAAGTCAGAATAAGTCATCATTATCACCGTTATCATCATCTACAATATCTACAGTAACAACGACATCTATTCCATCGTTGTCATCGTCAGTCTCATCATCATCATCTGCAGCTCTAGTTAATCTTTTTAAAGCTCAACATCAACAACAGAATTTAGCGGCAGCCGCTACAGCTGTTGCTTTACAACAGCACAATCAATTGAATGGTACGAACAGTCAAAATACTCAAGCTATACTTGCAACTCCACACGCCTCTCGGGTGA]
[-] EMBL CD164797 [ GCAATGTCAGGTTCAGGAGCCGTCAATAATCATACTTTAAGTGGACTATGTCATTTACCAAGTTTACATTCCAGTAATTTATCGGGAAACAATTTAATTTTAAGTCAGAATAAGTCATCATTATCACCGTTATCATCATCTACAATATCTACAGTAACAACGACATCTATTCCATCGTTGTCATCGTCAGTCTCATCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7875#0 AAGACAACCGATTTGGAGTTTGATTATACTCACATTTTTAACTTGAATCAACTCGCGAAA 60
consensus_7875#2 ------------------------------------------------------------
consensus_7875#1 ------------------------------------------------------------
consensus_7875#0 CTATCATCTGATGTCACCGGCAATATATATCACACTTCCATAGGCTTCCCATTTTATTAA 120
consensus_7875#2 ------------------------------------------------------------
consensus_7875#1 ------------------------------------------------------------
consensus_7875#0 TATTAGGTTTGTAAGGTAATATATCAGTATTCCATTTTCCTACCTATTCAATTGAAGAAA 180
consensus_7875#2 ------------------------------------------------------------
consensus_7875#1 ------------------------------------------------------------
consensus_7875#0 GAATATAAGGATACCAAACAAAGAAATTGTTTGAAAGGATTCGAAACATATTTTCGATTA 240
consensus_7875#2 ------------------------------------------------------------
consensus_7875#1 ------------------------------------------------------------
consensus_7875#0 CTTGTCTTTTTGAATTTACTTAAATATTTCTATTCAATATAAAAATTTTAAGGTTTTTTT 300
consensus_7875#2 ------------------------------------------------------------
consensus_7875#1 ------------------------------------------------------------
consensus_7875#0 TAATGAACTCTCTTCAGCCTCTAACTTGAACAACCAAAATATTGGATTGAATAGTTACAC 360
consensus_7875#2 ------------------------------------------------------------
consensus_7875#1 --------------------------------------ATGGAGAGTTATGGTGGGCGGC 22
consensus_7875#0 TAATACTTTGGCTTCCAGACCACGGATTAATGGCACATCTGTAGGAACTGGCAATAGTGT 420
consensus_7875#2 ------------------------------------------------------------
consensus_7875#1 TTATGCTCTTTCACGAGTGGTAACAGGTGTTAGTATGTATGTAAGATCATACACAAGT-- 80
consensus_7875#0 TGTTGCTGCCGCAATTTCAGCTGCTACCGCTGTAGCTGCAATGTCAGGTTCAGGAGTCGT 480
consensus_7875#2 ----GCTGCCGCAATTACAGCTGCTGCCGCTGTAGCTGCAATGTCAGGTTCAGGAGTCGT 56
consensus_7875#1 ----ACTGTAATATATCTAATTGTTATT-CAATATTATAAATGTCATGGAGATACATCAT 135
*** * * * ** * * ** ******* * * ** *
consensus_7875#0 CAAT-AATCATACTTTAAGTGG-ACTATGTCATTTACCAAGTTTACATTCCAGTAATTTA 538
consensus_7875#2 CAAT-AATCATACTTTAAGTGG-ACTATGTCATTTACCAAGTTTACATTCCAGTAATTTA 114
consensus_7875#1 AATTCAATGATATTTTTGATATTACAAAGGAATTCAGCA----TAACCTTCATAAATTCA 191
* * *** *** *** * ** * * *** * ** ** * ** **** *
consensus_7875#0 TCGGGAAACAATTTAATTTTAAGTCAGAATAAGTCATCATTATCACCGTTATCATCATCT 598
consensus_7875#2 TCGGGAAACAATTTAATTTTAAGTCAGAATAAGTCATCATTATCACCGTTATCATCATCT 174
consensus_7875#1 CATGCATAAAACATAAACCATATTTAAAAT--GTTCACTTTATT-TCATAGAGACAATTA 248
* * * ** *** * * * *** ** * **** * * * **
consensus_7875#0 ACAATATCTACAGTAACAACGACATCTATTCCATCGTTGTCATCGTCAGTCTCATCATCA 658
consensus_7875#2 ACAATATCTACAGTAACAACGACATCTATTCCATCGTTGTCATCGTCAGTCTCATCATCA 234
consensus_7875#1 AAACTGATTTC--TTACGATAATAAACAACTCACTGTACACAA-AACAAAATCATTAT-A 304
* * * * * * ** * * * * ** ** ** ** **** ** *
consensus_7875#0 TCATCTG-CAGCTCTAGTTAATCTTCTTAAAGCTCAACATCAACAACAGAATTTAGCGGC 717
consensus_7875#2 TCATCTG-CAGCTCTAGTTAATCTTTTTAAAGCTCAACATCAACAACAGAATTTAGCGGC 293
consensus_7875#1 TAGCCTATCAGCTGTATTTAACCTTTAGCCAG-TCATTTTCTCCAATGGTAAACAATTAA 363
* ** ***** ** **** *** ** *** ** *** * * *
consensus_7875#0 AGCCGCTACAGCTGTTGCTTTACAACAGCACAATCAATTGAATGGTACGAACAGTCAAAA 777
consensus_7875#2 AGCCGCTACAGCTGTTGCTTTACAACAGCACAATCAATTGAATGGTACGAACAGTCAAAA 353
consensus_7875#1 AATAAATTCGAAAAC--ATCAATTAAAACACAATTCGTTCA-----CCTAGTTATTAAAA 416
* * * * * * * ****** ** * * * * ****
consensus_7875#0 TACTCAAGCTATACTTGCTGCTCT-TATGCTTCAAAA---TCTCAATACTCCTAATTAAC 833
consensus_7875#2 TACTCAAGCTATACTTGCAACTCCACACGCCTCTCGG---GTGA---------------- 394
consensus_7875#1 CGTTTTATCTAACTATATATGTACACAGACTTACAGACTATTTAAAGATTGTTTGATAAG 476
* * *** * * * * *
consensus_7875#0 TTATCAAACAATCTTTAAATGGTCTATCATTTCCATTAGAGAATGCCGTTTCAAATCTCG 893
consensus_7875#2 ------------------------------------------------------------
consensus_7875#1 TTGATTAGGAGTATTGAGATTTTGAAGCATAAG-AGCAGCAAGTATAGCTTGAG------ 529
consensus_7875#0 TGATTTTCCACCTAAACCAG 913
consensus_7875#2 --------------------
consensus_7875#1 --------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||