These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7876#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 852 fasta sequence [TGAAAATGGTCTACCAAAAATTATCATCCCATTGCCTTCTAGACGAGAAGCATGTTCTTTTGTTCTCAAACCATTACAACATACAGTTGGGGATTTATCAAACTTCATAAAATGTGAAGATAGTGGTGTCGATCGAATAACATTTTTTAGTAAAGATGGGACGAGGATCGCAAAGTCAAACTCGATTTCCGATCTACTTACTTCTGATTTTCACATACTTATCAATGACCAACAATACCACGTAGATACGTCGTCAATCTTGAATAATTATTGCAAGGACACCAGTTCTGAGCTTCATTTACTAACATTTTTAACTCGGAATATTATTTTACTTAGTGAAAACAGTGGACTGATGAATCTCCTCCAATATCATTTTAAACAGTCAGTATTTAATATGATACCGAAGTATACCAAGCTGTTGAATCCATTAGGAAAGTTCAGTTAACAAAACATGAATCTGGTAGTCCCGAATCGACTCATCTGTATCCTAATGTATTTCATATTCTCTTTTAGTTTTAATCACTAGGTCTGTAAGGATATTTAAATCAACTGTTCAAACTCTTGATGTTTGTTTTTCAACTGTTTATATTTTGATCGAATAGTAACCAATCGATTTTGCAATATCTTTCTGTTATTTTTTCATGTGAATAATTTAGTAATCAGCTATTTTCATTTTGAANAGTCGANTATTTGCCTATGATATGATTGTCGTGCATTCCGTTGTTTTATTCAAGCAAAATACATCCAGATAACTGANCATTTTGATTGGATTAAAGCGTTCATTGAACAGGTTTTATACGTAGCTTGTGACCA-CATCGATTTTTTCCTGTTTA-ATGAGCCAATAAATTAAAT] [+] EMBL CD079299 [TGAAAATGGTCTACCAAAAATTATCATCCCATTGCCTTCTAGACGAGAAGCATGTTCTTTTGTTCTCAAACCATTACAACATACAGTTGGGGATTTATCAAACTTCATAAAATGTGAAGATAGTGGTGTCGATCGAATAACATTTTTTAGTAAAGATGGGACGAGGATCGCAAAGTCAAACTCGATTTCCGATCTACTTACTTCTGATTTTCACATACTTATCAATGACCAACAATACCACGTAGATACGTCGTCAATCTTGAATAATTATTGCAAGGACACCAGTTCTGAGCTTCATTTACTAACATTTTTAACTCGGAATATTATTTTACTTAGTGAAAACAGTGGACTGATGAATCTCCTCCAATATCATTTTAAACAGTCAGTATTTAATATGATACCGAAGTATACCAAGCTGTTGAATCCATTAGGAAAGTTCAGTTAACAAAACATGAATCTGGTAGTCCCGAATCGACTCATCTGTATCCTAATGTATTTCATATTCTCTTTTAGTTTTAATCACTAGGTCTGTAAGGATATTTAAATCAACTGTTCAAACTCTTGATGTTTGTTTTTCAACTGTTTATATTTTGATCGAATAGTAACCAATCGATTTTGCAATATCTTTCTGTTATTTTTTCATGTGAATAATTTAGTAATCAGCTATTTTCATTTTGAANAGTCGANTATTTGCCTATGATATGATTGTCGTGCATTCCGTTGTTTTATTCAAGCAAAATACATCCAGATAACTGANCATTTTGATTGGATTAAAGCGTTCATTGAACAGGTTTTATACGTAGCTTGTGACCA CATCGATTTTTTCCTGTTTA ATGAGCCAATAAATTAA ] [-] EMBL CD073579 [ GATTTTCACATACTTATCAATGACCAACAATACCACGTAGATACGTCGTCAATCTTGAATAATTATTGCAAGGACACCAGTTCTGAGCTTCATTTACTAACATTTTTAACTCGGAATATTATTTTACTTAGTGAAAACAGTGGACTGATGAATCTCCTCCAATATCATTTTAAACAGTCAGTATTTAATATGATACCGAAGTATACCAAGCTGTTGAATCCATTAGGAAAGTTCAGTTAACAAAACATGAATCTGGTAGTCCCGAATCGACTCATCTGTATCCTAATGTATTTCATATTCTCTTTTAGTTTTAATCACTAGGTCTGTAAGGATATTTAAATCAACTGTTCAAACTCTTGATGTTTGTTTTTCAACTGTTTATATTTTGATCGAATAGTAACCAATCGATTTTGCAATATCTTTCTGTTATTTTTTCATGTGAATAATTTAGTAATCAGCTATTTTCATTTTGAAAAGTCGATAATTTGCCTATGATATGATTGTCGTGCATTCCGTTGTTTTATTCAAGCAAAATACATCAAGATAACTGAACATTTTGATTGGATTAAAGCGTTCATTGAACAGGTTTTATACGTAGCTTGTGACCACCATCGATTTTTTCCTGTTTATATGAGCCAATAAAATAAAT] consensusID : consensus_7876#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 728 fasta sequence [ACTTCATAAAATGTGAAGATAGTGGTGTCGATCGAATAACATTTTTTAGTAAAGATGGGACGAGGATCGCAAAGTCAAATTCGATTTCCGATCTACTTACTTCTGATTTTCACATACTTATCAATGACCAACAATACCACGTAGATACGTCGTCAATCTCCTCCCAGTTTAGTGTATTGCCAAAGGATTTAGCAAATGTTCGAGAATTAGTCTCAAAACTTGCCAATGCCATTCATGTAGATGAATTTTATGCACAAAAACAACAACAACTTGAGAAATGTATAGAAGATGTGAATCTGCAATTGGAACCATTTGAAAAGAAAAAGTCAGTCATTGCTGTACAAGCAGCACAACGAACACGTTGGCTTACTTGGCTTGGATTAGGTGCAATGGGTATACAATTTGGATTACTGGCAAGATTAACATGGTGGGAATATTCATGGGATATTATGGAACCTGTGACATATTTTGTTGGCTATGGAACTAGCATGGCTATGTATGCCTATTACGTGATCACACGACAGGATTACACACTTCCCCAAGTATTTGATCGTGAATATCTTAAAAGCTTTTATAAATCAGCTGATAAATCATCATTTGACGTACAGCGTTACAATGAATTACGTGACGAACTAGCTCATTTGAAGTCAGAACTACGTCGCCTTAAAGATCCTCTTTTATATCAGTTACCTTTACAACAAACTGAATATATGGTACCTGAACAAGTT] [+] EMBL AI977008 [ACTTCATAAAATGTGAAGATAGTGGTGTCGATCGAATAACATTTTTTAGTAAAGATGGGACGAGGATCGCAAAGTCAAATTCGATTTCCGATCTACTTACTTCTGATTTTCACATACTTATCAATGACCAACAATACCACGTAGATACGTCGTCAATCTCCTCCCAGTTTAGTGTATTGCCAAAGGATTTAGCAAATGTTCGAGAATTAGTCTCAAAACTTGCCAATGCCATTCATGTAGATGAATTTTATGCACAAAAACAACAACAACTTGAGAAATGTATAGAAGATGTGAATCTGCAATTGGAACCATTTGAAAAGAAAAAGTCAGTCATTGCTGTACAAGCAGCACAACGAACACGTTGGCTTACTTGGCTTGGATTAGGTGCAATGGGTATACAATTTGGATTACTGGCAAGATTAACATGGTGGGAATATTCATGGGATATTATGGAACCTGTGACATATTTTGTTGGCTATGGAACTAGCATGG ] [+] EMBL CD111566 [ tGAAGATGTGAATCTGCAATTGGAACCATTTGAAAAGAAAAAGTCAGTCATTGCTGTACAAGCAGCACAACGAACACGTTGGCTCACTTGGCTTGGATTAGGTGCAATGGGTATACAATTTGGATTACTGGCAAGATTAACATGGTGGGAATATTCATGGGATATTATGGAACCTGTGACATATTTTGTTGGCTATGGAACTAGCATGGCTATGTATGCCTATTACGTGATCACACGACAGGATTACACACTTCCCCAAGTATTTGATCGTGAATATCTTAAAAGCTTTTATAAATCAGCTGATAAATCATCATTTGACGTACAGCGTTACAATGAATTACGTGACGAACTAGCTCATTTGAAGTCAGAACTACGTCGCCTTAAAGATCCTCTTTTATATCAGTTACCTTTACAACAAACTGAATATATGGTACCTGAACAAGTT] consensusID : consensus_7876#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 183 fasta sequence [TTATTCGGCACCGGGCTGATAATCATATTTGACGTACAGCGTTACAATGAATTACGTGACGAACTAGCTCATTTGAAGTCAGAACTACGTCGCCTTAAAGATCCTCTTTTATATCAGTTACCTTTACAACAAACTGAATATATGGTACCTGAACAAGTTGAAGATATTCTAAATCAAACTAAG] [+] EMBL CD081195 [TTATTCGGCACCGGGCTGATAATCATATTTGACGTACAGCGTTACAATGAATTACGTGACGAACTAGCTCATTTGAAGTCAGAACTACGTCGCCTTAAAGATCCTCTTTTATATCAGTTACCTTTACAACAAACTGAATATATGGTACCTGAACAAGTTGAAGATATTCTAAATCAAACTAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7876#1 ------------------------------------------------------------ consensus_7876#2 ------------------------------------------------------------ consensus_7876#0 TGAAAATGGTCTACCAAAAATTATCATCCCATTGCCTTCTAGACGAGAAGCATGTTCTTT 60 consensus_7876#1 -----------------------------------------ACTTCATAAAATGTGAAGA 19 consensus_7876#2 ------------------------------------------------------------ consensus_7876#0 TGTTCTCAAACCATTACAACATACAGTTGGGGATTTATCAAACTTCATAAAATGTGAAGA 120 consensus_7876#1 TAGTGGTGTCGATCGAATAACATTTTTTAGTAAAGATGGGACGAGGATCGCAAAGTCAAA 79 consensus_7876#2 ------------------------------------------------------------ consensus_7876#0 TAGTGGTGTCGATCGAATAACATTTTTTAGTAAAGATGGGACGAGGATCGCAAAGTCAAA 180 consensus_7876#1 TTCGATTTCCGATCTACTTACTTCTGATTTTCACATACTTATCAATGACCAACAATACCA 139 consensus_7876#2 ------------------------------------------------------------ consensus_7876#0 CTCGATTTCCGATCTACTTACTTCTGATTTTCACATACTTATCAATGACCAACAATACCA 240 consensus_7876#1 CGTAGATACGTCGTCAATCTCCTCCCAGTTTAGTGTATTGCCAAAGGATTTAGCAAATGT 199 consensus_7876#2 ------------------------------------------------------------ consensus_7876#0 CGTAGATACGTCGTCAATCTTGAATAATTATTGCAAGGACACCAGTTCTGAGCTTCATTT 300 consensus_7876#1 TCGAGAATTAGTCTCAAAACTTGCCAATGCCATTCATGTAGA---TGAATTTTATGCACA 256 consensus_7876#2 ------------------------------------------------------------ consensus_7876#0 ACTAACATTTTTAACTCGGAATATTATTTTACTTAGTGAAAACAGTGGACTGATGAATCT 360 consensus_7876#1 AAAACAACAACAACTTGAGAAATGTATAGAAGATGTGAATCTGCAATTGG--AACCATTT 314 consensus_7876#2 ------------------------------------------------------------ consensus_7876#0 CCTCCAATATCATTTTAAACAGTCAGTATTTAATATGATACCGAAGTATACCAAGCTGTT 420 consensus_7876#1 GAAAAGAAAAAGTCAGTCATTGCTGTACAAGCAGCACAACGAACACGTTGGCTTACTTGG 374 consensus_7876#2 ------------------------------------------------------------ consensus_7876#0 GAATCCATTAGGAAAGTTCAGTTAACAAAACATGAATCTGGTAGTCCCGAATCGACTCAT 480 consensus_7876#1 CTTGGATTAGGTGCAATGGGTATACAATTTGGATTACTGGCAAGATTAACATGGTGGGAA 434 consensus_7876#2 ------------------------------------------------------------ consensus_7876#0 CTGTATCCTAATGTATTTCATATTCTCTTTTAGTTTTAATCA---CTAGGTCTGTAAGGA 537 consensus_7876#1 TATTCATGGGATATTATGGAACCTGTGACATATTTTGTTGGCTATGGAACTAGCATGGCT 494 consensus_7876#2 ------------------------------------------------------------ consensus_7876#0 TATTTAAATCAACTGTTCAAACTCTTGATGTTTGTTTTTCAACTGTTTATATTTTGATCG 597 consensus_7876#1 ATGTATGCCTATTACGTGATCACACGACAGGATTACACACTTCCCCAAGTATTTGATCGT 554 consensus_7876#2 ------------------------------------------------------------ consensus_7876#0 AATAGTAACCAATCGATTTTGCAATATCTTTCTGTTATTTTTTCATGTGAATAATTTAGT 657 consensus_7876#1 GAATATCT-TAAAAGCTTTTATAAATCAGCTGATAAATCATCATTTGAC-GTACAGCGTT 612 consensus_7876#2 --------------TTATTCGGCACCGGGCTGATAA-TCAT-ATTTGAC-GTACAGCGTT 43 consensus_7876#0 AATCAGCTATTTTCATTTTGAANAGTCGANTATTTGCCTATGATATGATTGTCGTGCATT 717 ** * * * ** ** *** ** ** ** consensus_7876#1 ACAATGAATTACGTGA-CGAACTAGCTCATTTGAAGTCAGAACTACG-TCGCCTTAAAGA 670 consensus_7876#2 ACAATGAATTACGTGA-CGAACTAGCTCATTTGAAGTCAGAACTACG-TCGCCTTAAAGA 101 consensus_7876#0 CCGTTGTTTTATTCAAGCAAAATACATCCAGATAACTGANCATTTTGATTGGATTAAAG- 776 * ** *** * * ** ** ** ** * * * * * * * ****** consensus_7876#1 TCCTCTTTTATATCAGTTACCTTTACAACAAACTGAATATATGGTACCTGAACAAGTT-- 728 consensus_7876#2 TCCTCTTTTATATCAGTTACCTTTACAACAAACTGAATATATGGTACCTGAACAAGTTGA 161 consensus_7876#0 -CGTTCATTGAACAGGTTTTATACGTAGCTTG-TGACCACATCGATTTTTTCCTGTTTAA 834 * * ** * *** * * * *** * ** * * * ** consensus_7876#1 ---------------------- consensus_7876#2 AGATATTCTAAATCAAACTAAG 183 consensus_7876#0 TGAGCCAATAAATTAAAT---- 852 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||