cluster # 7887

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Schistosoma mansoni
cluster # 7887 cluster # 7887 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7887#0 length = 1129 sequences # 4

consensus_7887#1 length = 233 sequences # 1

consensusID : consensus_7887#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1129
fasta sequence

                              [CCAGGCCANAATTCGGCACGAGGGCTATTGTCCCGTACCGAAATCGTGATATTCATTTGCGTATGTTTTTAGGACATATGCATGCTTTTCTACGTAAACAACTGCTCACGTATACCATTTTCATTATAAATCAAGCTGGTAAAACTCATTTCAATCGCGCCCTCCTTCTAAATGTTGGGTTTATCGAATCGAAGCGGGTTACGAATTTCGATTGCTTCATATTTCATGATGTGGATTTATTGCCTGAAGACGATCGAAATTCATATCGTTGTGGCGACCAACCGAGACACCTATCTGTTGCTGTGGACAAGTTTAACTACCGTCTTCCTTATCTTAATATTTTTGGCGGAGCTGTGGCGTTCACCAAGGAACAGTTTGTAAAGGTTGGTGGGTTTTCAAATATTTATTTTGGATGGGGTGGAGAAGATGACGATTTATACGCTAGAGTAGTTTATCATAATTACAGCATTATGCGTTACCCTGAAGAAATCTCTCGTTACAAAATGATTAGTCATAAGAAAGATCCAGATAATCCGGACAATCCTAAACGTAACGAACTTCTGAAGAATGCATCAAGTCGCTTTAAAACAGATGGTTATTGGAATGCGAATTATACGCTACTGGAGTCCTACCCTGCTTACAAT-GGCCTGTTTTATTGGGTGTCGATTAGTCCATAAGTGGGTGAGAAGATTTAGCACATTCTGATTATTTGTTTTGTCACAGATTACTCCGTATACGAAGATCACATCGTCCACGAAATTCCCTATAATTTTTCTACTCAATGACCTTTCCTACTGGCACTTTCATTTTGTTCAGTTTCCATAGTATTTACCAACTATTTTTTCTGTTACGTTTATGTTTATTCCACATTTTGTATATTTTACACAAAATGTTTTTTTTTCCACGCCTAATTTCTGGATTTATAATTTCTTTAGACAAATTCGACAACCTGTAAATGCTGCTTAGTTAAAAAAAGTATGTTGTAATTGTTTACGTTTATAATTTATTGTTAGTTCCATTGATAAAAAAGTATTTACTGTTCAATTTTAAAGATTTTAATTGTATGCCATAGCAACAGGAACATTGCGAAAAGATCTTTTCCCATGATAGTTTTAAAAAATAAATTCGA]

[+] EMBL CD081993             [CCAGGCCANAATTCGGCACGAGGGCTATTGTCCCGTACCGAAATCGTGATATTCATTTGCGTATGTTTTTAGGACATATGCATGCTTTTCTACGTAAACAACTGCTCACGTATACCATTTTCATTATAAATCAAGCTGGTAAAACTCATTTCAATCGCGCCCTCCTTCTAAATGTTGGGTTTATCGAATCGAAGCGGGTTACGAATTTCGATTGCTTCATATTTCATGATGTGGATTTATTGCCTGAAGACGATCGAAATTCATATCGTTGTGGCGACCAACCGAGACACCTATCTGTTGCTGTGGACAAGTTTAACTACCGTCTTCCTTATCTTAATATTTTTGGCGGAGCTGTGGCGTTCACCAAGGAACAGTTTGTAAAGGTTGGTGGGTTTTCAAATATTTATTTTGGATGGGGTGGAGAAGATGACGATTTATACGCTAGAGTAGTTTATCATAATTACAGCATTATGCGTTACCCTGAAGAAATCTCTCGTTACAAAATGATTAGTCATAAGAAAGATCCAGATAATCCGGACAATCCTAAACGTAACGAACTTCTGAAGAATGCATCAAGTCGCTTTAAAACAGATGGTTATTGGAATGCGAATTATACGCTACTGGAGTCCTACCCTGCTTACAATGGGCCTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AI395862             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCTGAAGAAATCTCTCGTTACAAAATGATTAGTCATAAGAAAGATCCAGATAATCCGGACAATCCTAAACGTAACGAACTTCTGAAGAATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD075605             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GATAATCCGGACAATCCTAAACGTAACGAACTTCTGAAGAATGCATCAAGTCGCTTTAAAACAGATGGTTATTGGAATGCGAATTATACGCTACTGGAGTCCTACCCTGCTTACAAT GGCCTGTTTTATTGGGTGTCGATTAGTCCATAAGTGGGTGAGAAGATTTAGCACATTCTGATTATTTGTTTTGTCACAGATTACTCCGTATACGAAGATCACATCGTCCACGAAATTCCCTATAATTTTTCTACTCAATGACCTTTCCTACTGGCACTTTCATTTTGTTCAGTTTCCATAGTATTTACCAACTATTTTTTCTGTTACGTTTATGTTTATTCCACATTTTGTATATTTTACACAAAATGTTTTTTTTTCCACGCCTAATTTCTGGATTTATAATTTCTTTAGACAAATTCGACAACCTGTAAATGCTGCTTAGTTAAAAAAAGTATGTTGTAATTGTTTACGTTTATAATTTATTGTTAGTTCCATTGATAAAAAAGTATTTACTGTTCAATTTTAAAGATTTTAATTGTATGCCATAGCAACAGGAACATTGCGAAAAGATCTTTTCCCATGATAGTTTTAAAAAATAAATTCGA]
[+] EMBL AI396563             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGTCCTA CCTGCTTACAAT GGCCTGTTTTATTGGGTGTCGATTAGTCCATAAGTGGGTGAGAAGATTTAGCACATTCTGATTATTTGTTTCGTCACAGATTACTCCGTATACGAAGATCACATCGTCCACGAAATTCCCTATAATTTTTC                                                                                                                                                                                                                                                                                                                                                                  ]




>consensus_7887#0
CCAGGCCANAATTCGGCACGAGGGCTATTGTCCCGTACCGAAATCGTGATATTCATTTGC
GTATGTTTTTAGGACATATGCATGCTTTTCTACGTAAACAACTGCTCACGTATACCATTT
TCATTATAAATCAAGCTGGTAAAACTCATTTCAATCGCGCCCTCCTTCTAAATGTTGGGT
TTATCGAATCGAAGCGGGTTACGAATTTCGATTGCTTCATATTTCATGATGTGGATTTAT
TGCCTGAAGACGATCGAAATTCATATCGTTGTGGCGACCAACCGAGACACCTATCTGTTG
CTGTGGACAAGTTTAACTACCGTCTTCCTTATCTTAATATTTTTGGCGGAGCTGTGGCGT
TCACCAAGGAACAGTTTGTAAAGGTTGGTGGGTTTTCAAATATTTATTTTGGATGGGGTG
GAGAAGATGACGATTTATACGCTAGAGTAGTTTATCATAATTACAGCATTATGCGTTACC
CTGAAGAAATCTCTCGTTACAAAATGATTAGTCATAAGAAAGATCCAGATAATCCGGACA
ATCCTAAACGTAACGAACTTCTGAAGAATGCATCAAGTCGCTTTAAAACAGATGGTTATT
GGAATGCGAATTATACGCTACTGGAGTCCTACCCTGCTTACAATGGCCTGTTTTATTGGG
TGTCGATTAGTCCATAAGTGGGTGAGAAGATTTAGCACATTCTGATTATTTGTTTTGTCA
CAGATTACTCCGTATACGAAGATCACATCGTCCACGAAATTCCCTATAATTTTTCTACTC
AATGACCTTTCCTACTGGCACTTTCATTTTGTTCAGTTTCCATAGTATTTACCAACTATT
TTTTCTGTTACGTTTATGTTTATTCCACATTTTGTATATTTTACACAAAATGTTTTTTTT
TCCACGCCTAATTTCTGGATTTATAATTTCTTTAGACAAATTCGACAACCTGTAAATGCT
GCTTAGTTAAAAAAAGTATGTTGTAATTGTTTACGTTTATAATTTATTGTTAGTTCCATT
GATAAAAAAGTATTTACTGTTCAATTTTAAAGATTTTAATTGTATGCCATAGCAACAGGA
ACATTGCGAAAAGATCTTTTCCCATGATAGTTTTAAAAAATAAATTCGA

consensusID : consensus_7887#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 233
fasta sequence

                              [AATACGTCGGATTGTGGCGTGCAATTGTCTGTGATCCAACTGAAAATCTGGCTGTTATTGTCCCGTACCGAAATCGTGATATTCATTTGCGTATGTTTTTAAGACATATGCATGCTTTTCTACGTAAACAACTGCTCACGTATACCATTTTCATTATAAATCAAGCTGGTAAAACTCATTTCAATCGCGCCCTCCTTCTAAATGTTGGGTTTATCGAATCGAAGCGGGTTACG]

[+] EMBL CD117856             [AATACGTCGGATTGTGGCGTGCAATTGTCTGTGATCCAACTGAAAATCTGGCTGTTATTGTCCCGTACCGAAATCGTGATATTCATTTGCGTATGTTTTTAAGACATATGCATGCTTTTCTACGTAAACAACTGCTCACGTATACCATTTTCATTATAAATCAAGCTGGTAAAACTCATTTCAATCGCGCCCTCCTTCTAAATGTTGGGTTTATCGAATCGAAGCGGGTTACG]




>consensus_7887#1
AATACGTCGGATTGTGGCGTGCAATTGTCTGTGATCCAACTGAAAATCTGGCTGTTATTG
TCCCGTACCGAAATCGTGATATTCATTTGCGTATGTTTTTAAGACATATGCATGCTTTTC
TACGTAAACAACTGCTCACGTATACCATTTTCATTATAAATCAAGCTGGTAAAACTCATT
TCAATCGCGCCCTCCTTCTAAATGTTGGGTTTATCGAATCGAAGCGGGTTACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7887#0      ----------------------------CCAGGCCANAATTCGGCACGAGG--GCTATTG 30
consensus_7887#1      AATACGTCGGATTGTGGCGTGCAATTGTCTGTGATCCAACTGAAAATCTGGCTGTTATTG 60
                                                  *   *    ** *    *   **  * *****

consensus_7887#0      TCCCGTACCGAAATCGTGATATTCATTTGCGTATGTTTTTAGGACATATGCATGCTTTTC 90
consensus_7887#1      TCCCGTACCGAAATCGTGATATTCATTTGCGTATGTTTTTAAGACATATGCATGCTTTTC 120
                      ***************************************** ******************

consensus_7887#0      TACGTAAACAACTGCTCACGTATACCATTTTCATTATAAATCAAGCTGGTAAAACTCATT 150
consensus_7887#1      TACGTAAACAACTGCTCACGTATACCATTTTCATTATAAATCAAGCTGGTAAAACTCATT 180
                      ************************************************************

consensus_7887#0      TCAATCGCGCCCTCCTTCTAAATGTTGGGTTTATCGAATCGAAGCGGGTTACGAATTTCG 210
consensus_7887#1      TCAATCGCGCCCTCCTTCTAAATGTTGGGTTTATCGAATCGAAGCGGGTTACG------- 233
                      *****************************************************       

consensus_7887#0      ATTGCTTCATATTTCATGATGTGGATTTATTGCCTGAAGACGATCGAAATTCATATCGTT 270
consensus_7887#1      ------------------------------------------------------------
                                                                                  

consensus_7887#0      GTGGCGACCAACCGAGACACCTATCTGTTGCTGTGGACAAGTTTAACTACCGTCTTCCTT 330
consensus_7887#1      ------------------------------------------------------------
                                                                                  

consensus_7887#0      ATCTTAATATTTTTGGCGGAGCTGTGGCGTTCACCAAGGAACAGTTTGTAAAGGTTGGTG 390
consensus_7887#1      ------------------------------------------------------------
                                                                                  

consensus_7887#0      GGTTTTCAAATATTTATTTTGGATGGGGTGGAGAAGATGACGATTTATACGCTAGAGTAG 450
consensus_7887#1      ------------------------------------------------------------
                                                                                  

consensus_7887#0      TTTATCATAATTACAGCATTATGCGTTACCCTGAAGAAATCTCTCGTTACAAAATGATTA 510
consensus_7887#1      ------------------------------------------------------------
                                                                                  

consensus_7887#0      GTCATAAGAAAGATCCAGATAATCCGGACAATCCTAAACGTAACGAACTTCTGAAGAATG 570
consensus_7887#1      ------------------------------------------------------------
                                                                                  

consensus_7887#0      CATCAAGTCGCTTTAAAACAGATGGTTATTGGAATGCGAATTATACGCTACTGGAGTCCT 630
consensus_7887#1      ------------------------------------------------------------
                                                                                  

consensus_7887#0      ACCCTGCTTACAATGGCCTGTTTTATTGGGTGTCGATTAGTCCATAAGTGGGTGAGAAGA 690
consensus_7887#1      ------------------------------------------------------------
                                                                                  

consensus_7887#0      TTTAGCACATTCTGATTATTTGTTTTGTCACAGATTACTCCGTATACGAAGATCACATCG 750
consensus_7887#1      ------------------------------------------------------------
                                                                                  

consensus_7887#0      TCCACGAAATTCCCTATAATTTTTCTACTCAATGACCTTTCCTACTGGCACTTTCATTTT 810
consensus_7887#1      ------------------------------------------------------------
                                                                                  

consensus_7887#0      GTTCAGTTTCCATAGTATTTACCAACTATTTTTTCTGTTACGTTTATGTTTATTCCACAT 870
consensus_7887#1      ------------------------------------------------------------
                                                                                  

consensus_7887#0      TTTGTATATTTTACACAAAATGTTTTTTTTTCCACGCCTAATTTCTGGATTTATAATTTC 930
consensus_7887#1      ------------------------------------------------------------
                                                                                  

consensus_7887#0      TTTAGACAAATTCGACAACCTGTAAATGCTGCTTAGTTAAAAAAAGTATGTTGTAATTGT 990
consensus_7887#1      ------------------------------------------------------------
                                                                                  

consensus_7887#0      TTACGTTTATAATTTATTGTTAGTTCCATTGATAAAAAAGTATTTACTGTTCAATTTTAA 1050
consensus_7887#1      ------------------------------------------------------------
                                                                                  

consensus_7887#0      AGATTTTAATTGTATGCCATAGCAACAGGAACATTGCGAAAAGATCTTTTCCCATGATAG 1110
consensus_7887#1      ------------------------------------------------------------
                                                                                  

consensus_7887#0      TTTTAAAAAATAAATTCGA 1129
consensus_7887#1      -------------------