These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1670 fasta sequence [TTTTTCATGAATCAGTATGCGCAAGTATATTTTATACAAAATAATAATAATAAAAGGCTCAAAAAATAATTCATCATTCAATTGATTTCGAATGGTTTGCATATGTCTCAGTGGAATCGACACTTGTTTCAAGAAGACGTTCACGAATTAATTCAGCAATAGCACGTTGAGTTCGACGTTCTAATTTACGCAATTTCTTTTCAACACCCCTTTTTAAATCCCAATCAGGTTTACGAGGTGCAAGACTTGCTAGATTAACTTCATCAACAATAACTGGTGCATCGGCAGCTTCAAGTTGTGCAATGATGTGCTTGTTCAGATCTACCGGTTTACCAGCAGGCAATTCACCATCTTTTAATTCTTCTGACTGTGGTTTGTAATTTCGAAATAT-CGG-TTGGGTAATTCTCCATTATCACCATTGTTTAAGTGTATAATAC-TTTATGTGATGCA-TTTTCATACGTAATTGCTTTAGACGTTCTTTACGCCTTAAGGCTTCATCACGCATATGGCCTATGGACTGATCTGTTTCATTATCAACATGATTATCGCTAGTCTTGTTTTCTTTATTTTCTGACAAAACTAATTCATCACTTCCATGTTCTGGTTCTTGATCAATATTGTCAAGTGTAGTCATTGAGTCATGCAACAAATCACAATTGATACCTTCAAATTCTGCCTTAGATGCTTTAATTCATATGACCACATCTACAATGCAACAATTAAAACATGATGGTGATTTCTCAGATGAATTAAATGAAACATCTACAATACAATTTTATAATAAAGTATCACAACAACGTAAACGTCGTAAAACACGTACAACATTTTCTAATTGTCAATTAAATGAATTAGAAAATAATTTTAATCGTCAACGTTATTTAACTCCAACTGATCGTGATCGAATTGCTAAACATTTAGGATTAACTAATACACAGGTTATTACATGGTTTCAAAATCGTCGAGCTAAATTAAAAAGAGAAGCTGAGGAACTTGAACGTGATGTAATGGCTTTAAGAAAACAAAAACAACAAAAATTTACTTGTCTTTCATTATCTGATCATGATCATGAAGAAACACAAATTGATGATGAAAATGAACAAGGAGACAACAACAACGACGACGATGGCGACGATAACGACGTCGAAGAGGACGACGGTGAAGAACAAGAAAAAAATCATACAAAATATTTAACACAACCCCCTTCAATATCAAATATTTTACCGTCTTCATTAAAACATTTCCCATCTTCAACATTGAATACATTAGAAATAGATAATAAACATGAAACATTAAATATGAATCTATTTATCAATCCATTCAGTAATGAGAAATGTTTAAAAAGGAATAAAGATTTAATTAGACAACAATGTTACTTATTCAATCATCATATAAACAATTACTGTACTGTTAATAATGATAATAATATTAATAATAATAATAATAATAATAATAGAAAGAACAGTATTGATGGAATGAATAAAGGGAGATCTATTAAGAAAGGTAATAAAATTTGGTGCCCAGCTTTAGAATTAGAACAAGAAATTCATTGAAAGCAATGTCATTTGTTCCTGTTTTCTTTTGGATTTGTTCTTCTTTTTTTTATTATCTAATTCTCTTTTTTTTTTATTGAAACATTGAATTATCAACTCATTCAGATAAACGATTATTTG] [+] EMBL SMSMOXV [TTTTTCATGAATCAGTATGCGCAAGTATATTTTATACAAAATAATAATAATAAAAGGCTCAAAAAATAATTCATCATTCAATTGATTTCGAATGGTTTGCATATGTCTCAGTGGAATCGACACTTGTTTCAAGAAGACGTTCACGAATTAATTCAGCAATAGCACGTTGAGTTCGACGTTCTAATTTACGCAATTTCTTTTCAACACCCCTTTTTAAATCCCAATCAGGTTTACGAGGTGCAAGACTTGCTAGATTAACTTCATCAACAATAACTGGTGCATCGGCAGCTTCAAGTTGTGCAATGATGTGCTTGTTCAGATCTACCGGTTTACCAGCAGGCAATTCACCATCTTTTAATTCTTCTGACTGTGGTTTGTAATTTCGAAATAT CGGTTTGGGTAATTCTCCATTATCACCATTGTTTAAGTGTATAATACTTTTATGTGATGCATTTTTCATACGTAATTGCTTTAGACGTTCTTTACGCCTTAAGGCTTCATCACGCATATGGCCTATGGACTGATCTGTTTCATTATCAACATGATTATCGCTAGTCTTGTTTTCTTTATTTTCTGACAAAACTAATTCATCACTTCCATGTTCTGGTTCTTGATCAATATTGTCAAGTGTAGTCATTGAGTCATGCAACAAATGATTATTGATACCTTCAAATTCTGCCTTAGATGCTTTAATTCATATGACCACATCTACAATGCAACAATTAAAACATGATGGTGATTTCTCAGATGAATTAAATGAAACATCTACAATACAATTTTATAATAAAGTATCACAACAACGTAAACGTCGTAAAACACGTACAACATTTTCTAATTGTCAATTAAATGAATTAGAAAATAATTTTAATCGTCAACGTTATTTAACTCCAACTGATCGTGATCGAATTGCTAAACATTTAGGATTAACTAATACACAGGTTATTACATGGTTTCAAAATCGTCGAGCTAAATTAAAAAGAGAAGCTGAGGAACTTGAACGTGATGTAATGGCTTTAAGAAAACAAAAACAACAAAAATTTACTTGTCTTTCATTATCTGATCATGATCATGAAGAAACACAAATTGATGATGAAAATGAACAAGGAGACAACAACAACGACGACGATGGCGACGATAACGACGTCGAAGAGGACGACGGTGAAGAACAAGAAAAAAATCATACAAAATATTTAACACAACCCCCTTCAATATCAAATATTTTACCGTCTTCATTAAAACATTTCCCATCTTCAACATTGAATACATTAGAAATAGATAATAAACATGAAACATTAAATATGAATCTATTTATCAATCCATTCAGTAATGAGAAATGTTTAAAAAGGAATAAAGATTTAATTAGACAACAATGTTACTTATTCAATCATCATATAAACAATTACTGTACTGTTAATAATGATAATAATATTAATAATAATAATAATAATAATAATAGAAAGAACAGTATTGATGGAATGAATAAAGGGAGATCTATTAAGAAAGGTAATAAAATTTGGTGCCCAGCTTTAGAATTAGAACAAGAAATTCATTGAAAGCAATGTCATTTGTTCCTGTTTTCTTTTGGATTTGTTCTTCTTTTTTTTATTATCTAATTCTCTTTTTTTTTTATTGAAACATTGAATTATCAACTCATTCAGATAAACGATTATTTG] [-] EMBL AI168862 [ CAGCA GCAA TCACCATCTTTTAATTCTTCTGACTGTGG TTGTAATTTCG AATAT CGG TTGGGT ATTCTCCATTATCACCATTGTTTAAGMG WTAATAC TTTATGGGATGCA TTTTCATACGTAATTGCTTTAGACGTTCTTT TACCTTAAGGCTTCATCACGCATATGGCCTATGGACTGATCTGTTTCATTATCAACATGATTATCGCTAGTCTTGTTTTC TTATTTTCTGACAAAACTAATTCATCACTTCCATGTTCTGGTTCTTGATCAATATTGTCAAGTGTAGTCATTGAGTCATGCAACAAATCACA ] [-] EMBL AI168861 [ TATCCGG TT GGTAA TCTCCATTATCACCATTGTT AG GTATAATAC TTTATGTGATGCA TTTTCATACGTAATTGCTTTAGACGTTCTTTTAGCCTTAAGGCTTCATCACGCATATGGCCTATGGACTGATCTGTTTCATTATCAACATGATTATCGCTAGTCTTGTTTTCTTTATTTTCTGACAAAACTAATTCATCACTTCCATGTTCTGGTTCTTGATCAATATTGTCAAGTGTAGTCATTGAGTCATGCAACAAATCACA ] consensusID : consensus_7889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 957 fasta sequence [TGCGCAAGTATATTTTATACAAAATAATAATAATAAAAGGCTCAAAAAATAATTCATCATTCAATTGATTTCGAATGGTTTGCATATGTCTCAGTGGAATCGACACTTGTTTCAAGAAGACGTTCACGAATTAATTCAGCAATAGCACGTTGAGTTCGACGTTCTAATTTACGCAATTTCTTTTCAACACCCCTTTTTAAATCCCAATCAGGTTTACGAGGTGCAAGACTTGCTAGATTCTAAAGAAAATGAAATAAAAGTATAAATTTGCATTGGACGTTAAGAGAAATAAAAAGAGATTATAATTATCGACTTAGTAACTCCCTGTTCGATTTTTAAAAATTATCATTGATACCACCATTACTATTTTAACTCCACTCATATAGTTCTTATGAGTTTTTTTGCGCTAACAATAGCAAATGAAACCACTGCATATTTATGCCAGATCTTAGGGTTGCTTGTGAATGATGAGAATGAACTCTCAATCAATGTAGATTGCCTTCTAATCGCCTTGATTTAAACAATCAGTTAACGGCATTGACTGTCGCACACTAGATATGGATTAAATTCTAACCTAGTTTGAAAAGCTAATAACTGATATCAGGTTTTACTCTAAAAGCTGTATAAATCACAGTTTCTATGTGAAAAATGTAAACAATAACTGATCGCTTAGGTAGAAATAACCACAACAAACTTCTAACTGGAATATAAATAAACAAATGTGGCAGAATGCTAAGTGAGTCATTACACTCTGCCGCTTATAGTACACAAATCAATTGTTAATCCTAACATCACGTTTTTATTTATCTACAGTAGTGCTTGTTAGAAGCCACAGCTATTTGAATACAATTTATCCAAAATCTTAAACTGGAAATCATCATGTGCTCACTAGTTACTAGACTCAGAAGGAAGTTCCCGGAATTCTAGTGAGAAACCGTAACCAGTGAAGCTAATCCG] [+] EMBL CD073025 [TGCGCAAGTATATTTTATACAAAATAATAATAATAAAAGGCTCAAAAAATAATTCATCATTCAATTGATTTCGAATGGTTTGCATATGTCTCAGTGGAATCGACACTTGTTTCAAGAAGACGTTCACGAATTAATTCAGCAATAGCACGTTGAGTTCGACGTTCTAATTTACGCAATTTCTTTTCAACACCCCTTTTTAAATCCCAATCAGGTTTACGAGGTGCAAGACTTGCTAGATTCTAAAGAAAATGAAATAAAAGTATAAATTTGCATTGGACGTTAAGAGAAATAAAAAGAGATTATAATTATCGACTTAGTAACTCCCTGTTCGATTTTTAAAAATTATCATTGATACCACCATTACTATTTTAACTCCACTCATATAGTTCTTATGAGTTTTTTTGCGCTAACAATAGCAAATGAAACCACTGCATATTTATGCCAGATCTTAGGGTTGCTTGTGAATGATGAGAATGAACTCTCAATCAATGTAGATTGCCTTCTAATCGCCTTGATTTAAACAATCAGTTAACGGCATTGACTGTCGCACACTA ] [-] EMBL CD078558 [ TATTTTAACTCCACTCATATAGTTCTTATGAGTTTTTNTGCGCTAACAATAGCAAATGAAACCACTGCATATTTATGCCAGATCTTAGGGTTGCTTGTGAATGATGAGAATGAACTCTCAATCAATGTAGATTGCCTTCTAATCGCCTTGATTTAAACAATCAGTTAACGGCATTGACTGTCGCACACTAGATATGGATTAAATTCTAACCTAGTTTGAAAAGCTAATAACTGATATCAGGTTTTACTCTAAAAGCTGTATAAATCACAGTTTCTATGTGAAAAATGTAAACAATAACTGATCGCTTAGGTAGAAATAACCACAACAAACTTCTAACTGGAATATAAATAAACAAATGTGGCAGAATGCTAAGTGAGTCATTACACTCTGCCGCTTATAGTACACAAATCAATTGTTAATCCTAACATCACGTTTTTATTTATCTACAGTAGTGCTTGTTAGAAGCCACAGCTATTTGAATACAATTTATCCAAAATCTTAAACTGGAAATCATCATGTGCTCACTAGTTACTAGACTCAGAAGGAAGTTCCCGGAATTCTAGTGAGAAACCGTAACCAGTGAAGCTAATCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7889#0 TTTTTCATGAATCAGTATGCGCAAGTATATTTTATACAAAATAATAATAATAAAAGGCTC 60 consensus_7889#1 -----------------TGCGCAAGTATATTTTATACAAAATAATAATAATAAAAGGCTC 43 ******************************************* consensus_7889#0 AAAAAATAATTCATCATTCAATTGATTTCGAATGGTTTGCATATGTCTCAGTGGAATCGA 120 consensus_7889#1 AAAAAATAATTCATCATTCAATTGATTTCGAATGGTTTGCATATGTCTCAGTGGAATCGA 103 ************************************************************ consensus_7889#0 CACTTGTTTCAAGAAGACGTTCACGAATTAATTCAGCAATAGCACGTTGAGTTCGACGTT 180 consensus_7889#1 CACTTGTTTCAAGAAGACGTTCACGAATTAATTCAGCAATAGCACGTTGAGTTCGACGTT 163 ************************************************************ consensus_7889#0 CTAATTTACGCAATTTCTTTTCAACACCCCTTTTTAAATCCCAATCAGGTTTACGAGGTG 240 consensus_7889#1 CTAATTTACGCAATTTCTTTTCAACACCCCTTTTTAAATCCCAATCAGGTTTACGAGGTG 223 ************************************************************ consensus_7889#0 CAAGACTTGCTAGATTAACTTCATCAACAATAACTGGTGCATCGGCAGCTTCAAGTTGTG 300 consensus_7889#1 CAAGACTTGCTAGATT----CTAAAGAAAATGA--AATAAAAGTATAAATTTGCATTGGA 277 **************** * * *** * * * * ** *** consensus_7889#0 CAATGATGTGCTTGTTCAGATCTACCGGTTTACCAGCAGGCAATTCACCATCTTTTAATT 360 consensus_7889#1 CGTTAAGAGAAATAAAAAGAGATTATAATTATCGACTTAGTAACTCCCTGT--TCGATTT 335 * * * * *** * ** * * * ** ** * * * * ** consensus_7889#0 CTTCTGACTGTGGTTTGTAATTTCGAAATATCGGTTGGGTAATTCTCCATTATCACCATT 420 consensus_7889#1 TTAAAAATTATCATTGATACCACC--ATTACTATTT---TAA--CTCCACTCATATAGTT 388 * * * * ** ** * * ** ** *** ***** * * ** consensus_7889#0 GTTTAAGTGTATAATACTTTATGTGATGCATTTTCATACGTAATTGCTTTAGACGTTCTT 480 consensus_7889#1 -CTTATGAGT----TTTTTTGCGCTA-ACAATAGCAAATGAAACCACTGCATATTTATGC 442 *** * ** * *** * * ** * ** * * ** ** * * * consensus_7889#0 TACGCCTTAAGGCTTCATCACGCATATGGCCTATGGACTGATCTGTTTCATTATCAACAT 540 consensus_7889#1 CAGATCTTAGGGTTGC-TTGTGAATGATGAGAATGAACT-------CTCA--ATCAATGT 492 * **** ** * * * * ** * *** *** *** ***** * consensus_7889#0 GATTATCGCTAGTCTTGTTTTCTTTATTTTCTGACAAAACTAATTCATCACTTCCATGTT 600 consensus_7889#1 AG--ATTGCCT-TCTAATCGCCTTGATTT----AAACAATCAGTTAACGGCATTGACTGT 545 ** ** *** * *** **** * * ** * ** * * * * * consensus_7889#0 CTGGTTCTTGATCAATATTGTCAAGTGTAGTCATTGAGTCATGCAACAAATCACAATTGA 660 consensus_7889#1 CGCACACTAGATATGGATTA--AATTCTAACC---TAGT--TTGAAAAGCTAATAACTGA 598 * ** *** *** ** * ** * *** * ** * * * ** *** consensus_7889#0 TACCTTCAAATTCTGCCTTAGATGCTTTAATTCATATGACCACATCTACAATGCAACAAT 720 consensus_7889#1 TA---TCAGGTTTTACTCTAAAAGCTGTA---TAAATCACAGTTTCTATG-TGAAAAATG 651 ** *** ** * * ** * *** ** * ** ** **** ** ** * consensus_7889#0 TAAAACATGATGGTGATTTCTCAGATGAATTAAATGAAACATCTACAATACAATTTTATA 780 consensus_7889#1 TAAACAATAAC--TGATCGCTTAGGTA--------GAAATAACCACAACAAACTTCTA-A 700 **** ** * **** ** ** * **** * * **** * * ** ** * consensus_7889#0 ATAAAGTATCACAACAACGTAAACGTCGTAAAACAC---GTACAACATT---TTCTAATT 834 consensus_7889#1 CTGGAATAT---AAATAAACAAATGTGGCAGAATGCTAAGTGAGTCATTACACTCTGCCG 757 * * *** ** * *** ** * * ** * ** **** *** consensus_7889#0 GTCA-ATTAAATGAATTAGAAAATAATTTTAATCGT-CAACGTTATTTAACTCCAACTGA 892 consensus_7889#1 CTTATAGTACACAAATCAATTGTTAATCCTAACATCACGTTTTTATTTATCTACAGTAGT 817 * * * ** * *** * **** *** * ******* ** ** * consensus_7889#0 TCGTGATCGAATTGCTAAACATTTAGGATTAACTAATACACAGGTTATTACATGGTTTCA 952 consensus_7889#1 GCTTGTTAGAAGCCACAGCTATTTGAATACAATTTATCCAAAATCT------TAAACTGG 871 * ** * *** * **** ** * ** ** * * * * consensus_7889#0 AAATCGTCGAGCTAAATTAAAAAGAGAAGCTGAGGAACTTGAACGTGATGTAATGGCTTT 1012 consensus_7889#1 AAATCATCATGTGCTCACTAGTTACTAGACTCAGAAG---GAAGTTCCCGGAATTCTAGT 928 ***** ** * * * ** ** * *** * * *** * consensus_7889#0 AAGAAAACAAAAACAACAAAAATTTACTTGTCTTTCATTATCTGATCATGATCATGAAGA 1072 consensus_7889#1 GAGAAACCGTAACCAGTGAAG-CTAATCCG------------------------------ 957 ***** * ** ** ** * * * consensus_7889#0 AACACAAATTGATGATGAAAATGAACAAGGAGACAACAACAACGACGACGATGGCGACGA 1132 consensus_7889#1 ------------------------------------------------------------ consensus_7889#0 TAACGACGTCGAAGAGGACGACGGTGAAGAACAAGAAAAAAATCATACAAAATATTTAAC 1192 consensus_7889#1 ------------------------------------------------------------ consensus_7889#0 ACAACCCCCTTCAATATCAAATATTTTACCGTCTTCATTAAAACATTTCCCATCTTCAAC 1252 consensus_7889#1 ------------------------------------------------------------ consensus_7889#0 ATTGAATACATTAGAAATAGATAATAAACATGAAACATTAAATATGAATCTATTTATCAA 1312 consensus_7889#1 ------------------------------------------------------------ consensus_7889#0 TCCATTCAGTAATGAGAAATGTTTAAAAAGGAATAAAGATTTAATTAGACAACAATGTTA 1372 consensus_7889#1 ------------------------------------------------------------ consensus_7889#0 CTTATTCAATCATCATATAAACAATTACTGTACTGTTAATAATGATAATAATATTAATAA 1432 consensus_7889#1 ------------------------------------------------------------ consensus_7889#0 TAATAATAATAATAATAATAGAAAGAACAGTATTGATGGAATGAATAAAGGGAGATCTAT 1492 consensus_7889#1 ------------------------------------------------------------ consensus_7889#0 TAAGAAAGGTAATAAAATTTGGTGCCCAGCTTTAGAATTAGAACAAGAAATTCATTGAAA 1552 consensus_7889#1 ------------------------------------------------------------ consensus_7889#0 GCAATGTCATTTGTTCCTGTTTTCTTTTGGATTTGTTCTTCTTTTTTTTATTATCTAATT 1612 consensus_7889#1 ------------------------------------------------------------ consensus_7889#0 CTCTTTTTTTTTTATTGAAACATTGAATTATCAACTCATTCAGATAAACGATTATTTG 1670 consensus_7889#1 ---------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||