cluster # 7891

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Schistosoma mansoni
cluster # 7891 cluster # 7891 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7891#0 length = 415 sequences # 4

consensus_7891#1 length = 272 sequences # 1

consensusID : consensus_7891#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 415
fasta sequence

                              [GTTTTTCGAAGCTGATATTACTTACTTCCTTTCGTATGTTACCCCTCGTAGAGCATTATTATTATTACGTGTTACTTATTATTATTAATAGCATAGATCACCGACCGAAATTCTCCAACCAACTCTGTCCTGGGATCTCCTTTGAAGTTGTTTTCAATTGCTAATCATTCTTCTGATGTCTTCTTCCAATTCCAGCGAGTTTCCACAACTTTCAGAGTTTCTCCATCAAGTGTGGTCGGGTTGGTGTTCTCCGTGTTGTATTTCAGGATCTTGATTTTTCCTTTGTGCATGTTAAGACCTACTGCGGCAGATGCTGCTGCTACACTAGTTGTCTTCGTCTGCATTTGTTCGTGTGTATGAGATAGAAGAGCCAGGTCATCTTCCAAGTCCAAATCCTCTAATTGATTCCGAGCTG]

[+] EMBL CD164750             [GTTTTTCGAAGCTGATATTACTTACTTCCTTTCATATGTTACCCCTCGTAGAGCATTATTATTATTACGTGTTACTTATTATTATTAATAGCATAGATCACCGACCGAAATTCTCCAACCAACTCTGTCCTGGGATCTCCTTTGAAGTTGTTTTCAATTGCTAATCATTCTTCTGATGTCTTCTTCCAATTCCAGCGAGTTTCCACAACTTTCAGAGTTTCTCCATCAAGTGTGGTCGGGTTGGTGTTCTCCGTGTTGTATTTCAGGATCTTGATTTTTCCTTTGTGCATGTTAAGACCTACTGCGGCAGATGCTGCTGCTACACTAGTTGTCTTCGTCTGCATTTGTTCGTGTGTATGAGATAGAAGAGCCAGGTCATCTTCCAAGCCCAAATCCTCTAATTGATTCCGAGCT ]
[+] EMBL CD164701             [GTTTTTCGAAGCTGATATTACTTACTTCCTTTCGTATGTTACCCCTCGTAGAGCATTATTATTATTACGTGTTACTTATTATTATTAATAGCATAGATCACCGACCGAAATTCTCCAACCAACTCTGTCCTGGGATCTCCTTTGAAGTTGTTTTCAATTGCTAATCATTCTTCTGATGTCTTCTTCCAATTCCAGCGAGTTTCCACAACTTTCAGAGTTTCTCCATCAAGTGTGGTCGGGTTGGTGTTCTCCGTGTTGTATTTCAGGATCTTGATTTTTCCTTTGTGCATGTTAAGACCTACTGCGGCAGATGCTGCTGCTACACTAGTTGTCTTCGTCTGCATTTGTTCGTGTGTATGAGATAGAAGAGCCAGGTCATCTTCCAAGTCCAAATCCTCTAATTGATTCCGAGCT ]
[+] EMBL CD164698             [GTTTTTCGAAGCTGATATTACTTACTTCCTTTCGTATGTTACCCCTCGTAGAGCATTATTATTATTACGTGTTACTTATTATTATTAATAGCATAGATCACCGACCGAAATTCTCCAACCAACTCTGTCCTGGGATCTCCTTTGAAGTTGTTTTCAATTGCTAATCATTCTTCTGATGTCTTCTTCCAATTCCAGCGAGTTTCCACAACTTTCAGAGTTTCTCCATCAAGTGTGGTCGGGTTGGTGTTCTCCGTGTTGTATTTCAGGATCTTGATTTTTCCTTTGTGCATGTTAAGACCTACTGCGGCAGATGCTGCTGCTACACTAGTTGTCTTCGTCTGCATTTGTTCGTGTGTATGAGATAGAAGAGCCAGGTCATCTTCCAAGTCCAAATCCTCTAATTGATTCCGAGCT ]
[-] EMBL CD164745             [ TTTTTCGAAGCTGATATTACTTACTTCCTTTCGTATGTTACCCCTCGTAGAGCATTATTATTATTACGTGTTACTTATTATTATTAATAGCATAGATCACCGACCGAAATTCTCCAACCAACTCTGTCCTGGGATCTCCTTTGAAGTTGTTTTCAATTGCTAATCATTCTTCTGATGTCTTCTTCCAATTCCAGCGAGTTTCCACAACTTTCAGAGTTTCTCCATCAAGTGTGGTCGGGTTGGTGTTCTCCGTGTTGTATTTCAGGATCTTGATTTTTCCTTTGTGCATGTTAAGACCTACTGCGGCAGATGCTGCTGCTACACTAGTTGTCTTCGTCTGCATTTGTTCGTGTGTATGAGATAGAAGAGCCAGGTCATCTTCCAAGTCCAAATCCTCTAATTGATTCCGAGCTG]




>consensus_7891#0
GTTTTTCGAAGCTGATATTACTTACTTCCTTTCGTATGTTACCCCTCGTAGAGCATTATT
ATTATTACGTGTTACTTATTATTATTAATAGCATAGATCACCGACCGAAATTCTCCAACC
AACTCTGTCCTGGGATCTCCTTTGAAGTTGTTTTCAATTGCTAATCATTCTTCTGATGTC
TTCTTCCAATTCCAGCGAGTTTCCACAACTTTCAGAGTTTCTCCATCAAGTGTGGTCGGG
TTGGTGTTCTCCGTGTTGTATTTCAGGATCTTGATTTTTCCTTTGTGCATGTTAAGACCT
ACTGCGGCAGATGCTGCTGCTACACTAGTTGTCTTCGTCTGCATTTGTTCGTGTGTATGA
GATAGAAGAGCCAGGTCATCTTCCAAGTCCAAATCCTCTAATTGATTCCGAGCTG

consensusID : consensus_7891#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [TGTTCACTGATGATGCTGCCCCGATAGGTACGTGAATGATTCCACATCTTCCGGAGCTTATCCATCAAGCGTGGTTGGGTTGGTGTTCTCTGTATTGTATTTAAGGATTTTGGTTTTTCCTTTGTGTATGTTGAGGCCTACTGACGTCGAGGCTGCTGCTACACTAGTTGTCTTCATCTGCATTTGTTCGTGTGTTTGAGATAGAAGGGCCAGGTCATCAGAGAAGCCCAAATCTTCTAATTGATTCCGAGCTGTCCGCTGTATCCCGTGCT]

[-] EMBL CD192349             [TGTTCACTGATGATGCTGCCCCGATAGGTACGTGAATGATTCCACATCTTCCGGAGCTTATCCATCAAGCGTGGTTGGGTTGGTGTTCTCTGTATTGTATTTAAGGATTTTGGTTTTTCCTTTGTGTATGTTGAGGCCTACTGACGTCGAGGCTGCTGCTACACTAGTTGTCTTCATCTGCATTTGTTCGTGTGTTTGAGATAGAAGGGCCAGGTCATCAGAGAAGCCCAAATCTTCTAATTGATTCCGAGCTGTCCGCTGTATCCCGTGCT]




>consensus_7891#1
TGTTCACTGATGATGCTGCCCCGATAGGTACGTGAATGATTCCACATCTTCCGGAGCTTA
TCCATCAAGCGTGGTTGGGTTGGTGTTCTCTGTATTGTATTTAAGGATTTTGGTTTTTCC
TTTGTGTATGTTGAGGCCTACTGACGTCGAGGCTGCTGCTACACTAGTTGTCTTCATCTG
CATTTGTTCGTGTGTTTGAGATAGAAGGGCCAGGTCATCAGAGAAGCCCAAATCTTCTAA
TTGATTCCGAGCTGTCCGCTGTATCCCGTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7891#0      GTTTTTCGAAGCTGATATTACTTACTTCCTTTCGTATGTTACCCCTCGTAGAGCATTATT 60
consensus_7891#1      ------------------------------------------------------------
                                                                                  

consensus_7891#0      ATTATTACGTGTTACTTATTATTATTAATAGCATAGATCACCGACCGAAATTCTCCAACC 120
consensus_7891#1      ------------------------------------------------------------
                                                                                  

consensus_7891#0      AACTCTGTCCTGGGATCTCCTTTGAAGTTGTTTTCAATTGCTAATCATTCTTCTGATGTC 180
consensus_7891#1      -----------------------------------------TGTTCACTGATGATGCTGC 19
                                                               *  *** *  *       *

consensus_7891#0      TTCTTCCAATTCCAGCGAGTTTCCACAACTTTCAGAGTTTCTCCATCAAGTGTGGTCGGG 240
consensus_7891#1      CCCGATAGGTACGTGAATGATTCCACATCTTCCGGAGCTTATCCATCAAGCGTGGTTGGG 79
                        *      * *  *   * ******* *** * *** ** ********* ***** ***

consensus_7891#0      TTGGTGTTCTCCGTGTTGTATTTCAGGATCTTGATTTTTCCTTTGTGCATGTTAAGACCT 300
consensus_7891#1      TTGGTGTTCTCTGTATTGTATTTAAGGATTTTGGTTTTTCCTTTGTGTATGTTGAGGCCT 139
                      *********** ** ******** ***** *** ************* ***** ** ***

consensus_7891#0      ACTGCGGCAGATGCTGCTGCTACACTAGTTGTCTTCGTCTGCATTTGTTCGTGTGTATGA 360
consensus_7891#1      ACTGACGTCGAGGCTGCTGCTACACTAGTTGTCTTCATCTGCATTTGTTCGTGTGTTTGA 199
                      ****  *  ** ************************ ******************* ***

consensus_7891#0      GATAGAAGAGCCAGGTCATCTTCCAAGTCCAAATCCTCTAATTGATTCCGAGCTG----- 415
consensus_7891#1      GATAGAAGGGCCAGGTCATCAGAGAAGCCCAAATCTTCTAATTGATTCCGAGCTGTCCGC 259
                      ******** ***********    *** ******* *******************     

consensus_7891#0      -------------
consensus_7891#1      TGTATCCCGTGCT 272