These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7892#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 947 fasta sequence [GAGGGCCTAATACCACGGACTAAAGATTGCAAAAAGCGCGCTTGTCAGAGTTCAGGATCGGTTGAGTCTACACAGTCCTGTTGGAAATCCTTTTACAAAGCGGAAGTTGCTTCTAGTGAAGTCAATAAAGATTATAAGCAGGTTAACGCCAACCCTTTAACAATCTCCACAATAGAACAAAATAAAGAAACACTTTTGACTGAAATTAGGAGCCGAATAAATTAGCACTTGTGGAGTATAATTCACGTGAAGCAGCATTGTCTAGTCTTAAGTCATTGGGTGACAAATTTTTTGGAGATATTCCTGTTGCTGTGGCGTTGTGTTCTGAGCGCTGTAAATCTCCGTCTAATAGTTGGAGGCCACCACAATCATATGAACTAAGTGATTTTAATTTGAATAAACTGTATGTAGCAGGTATCAATCGTCGATCAACTGAACAGGAAATTCGGGACCTATTTCCTAACGCTGAGTCTTTTGACTTCATTGTACATGAACGTGCTCTGTGGCATTGTCGTGTTATATTTACCAATCAAAAAGACGCTCTTGAAGCATTCAATACACGACATGGAGTTGTCCTCCATGATACGCCAATTAACTTAAACTTTGACCTAAGGAGTCGTAGATCTTCACTTTTAGTCCGTGTACCANACGTTTCAACATTTACTGATCCAAAGGGTCTGTCAAACGAAAAGCCGAAACGGAAAAGCAGAAAAAGTAATTCTCATTTAAAATCAGCACGAAGTGTGGAGAATAAGTCTCTAGCTGAATCACCAAGTGATCCTGGNTAGAATNCAACCTTNAGNCCAATANNAGCAGAAAAAAGTNCAAAATGANAGTGCTCTAGTGGTCAANTCANTTTCGTGGCTACTACTATGGAATCANGTTTAACAGTACGAAAGCGAAATGGGAGATGGAACCTATGGTCGTACTTAGCGAAGTATAAAATA] [+] EMBL CD081872 [GAGGGCCTAATACCACGGACTAAAGATTGCAAAAAGCGCGCTTGTCAGAGTTCAGGATCGGTTGAGTCTACACAGTCCTGTTGGAAATCCTTTTACAAAGCGGAAGTTGCTTCTAGTGAAGTCAATAAAGATTATAAGCAGGTTAACGCCAACCCTTTAACAATCTCCACAATAGAACAAAATAAAGAAACACTTTTGACTGAAATTAGGAGCCGAATAAATTAGCACTTGTGGAGTATAATTCACGTGAAGCAGCATTGTCTAGTCTTAAGTCATTGGGTGACAAATTTTTTGGAGATATTCCTGTTGCTGTGGCGTTGTGTTCTGAGCGCTGTAAATCTCCGTCTAATAGTTGGAGGCCACCACAATCATATGAACTAAGTGATTTTAATTTGAATAAACTGTATGTAGCAGGTATCAATCGTCGATCAACTGAACAGGAAATTCGGGACCTATTTCCTAACGCTGAGTCTTTTGACTTCATTGTACATGAACGTGCTCTGTGGCATTGTCGTGTTATATTTACCAATCAAAAAGACGCTCTTGAAGCATTCAATACACGACATGGAGTTGTCCTCCATGATACGCCAATTAACTTAAACTTTGACCTAAGGAGTCGTAGATCTTCACTTTTAGTCCGTGTACCANACGTTTCAACATTTACTGATCCAAAGGGTCTGTCAAACGAAAAGCCGAAACGGAAAAGCAGAAAAAGTAATTCTCATTTAAAATCAGCACGAAGTGTGGAGAATAAGTCTCTAGCTGAATCACCAAGTGATCCTGGNTAGAATNCAACCTTNAGNCCAATANNAGCAGAAAAAAGTNCAAAATGANAGTGCTCTAGTGGTCAANTCANTTTCGTGGCTACTACTATGGAATCANGTTTAACAGTACGAAAGCGAAATGGGAGATGGAACCTATGGTCGTACTTAGCGAAGTATAAAATA] consensusID : consensus_7892#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [TTTGTTGCATGATCACTCCTGCTCCCAAGCGAACGCTAATATATGACGTGCTACAATTTGTAACGGATTTGGAAAGTTACTTTGTCAGCTTCTGTTTCCGGTTATCACTTTGTTTTATCTCACCTTCGCGTTGTTCATAATTGCTGTCGATTGCTTTCTTTGTTAAGAGCTTTTAGTTATGGTTGAAAGCATTCCAGGGACTTCAAGAAGTGTACATAATGCACCTAAAGTTCCTACTAGTGGTTACCTAATACCACGGACTAAAGATTGCAAAAAGCGCGCTTGTCAGAGTTCAGGATCGGTTGAGTCTACACAGTCCTGTTGGAAATCCTTTTACAAAGCGGAAGTTGCTTCTAGTGAAGTCAATAAAGATTATAAGGTTAACGCCAACCCTTTAACAATCTCCACAATAGAACAAAATAAAGAAACACTTTTGACTGAAATTAGGAGCCGAATAAGTAGTTTTTGGTTTCTGTCTTTTTGGTTGAAAACTTCATTCATCCCGTTTTGCTTCGATAGATGAAATGAATTCACGCACATTATATTTACGTANATTACCACGAAATACAAGTCTTTCTCAGCTGNAAGCATTGTGTCGTAATTCAGCANAT] [+] EMBL CD078565 [TTTGTTGCATGATCACTCCTGCTCCCAAGCGAACGCTAATATATGACGTGCTACAATTTGTAACGGATTTGGAAAGTTACTTTGTCAGCTTCTGTTTCCGGTTATCACTTTGTTTTATCTCACCTTCGCGTTGTTCATAATTGCTGTCGATTGCTTTCTTTGTTAAGAGCTTTTAGTTATGGTTGAAAGCATTCCAGGGACTTCAAGAAGTGTACATAATGCACCTAAAGTTCCTACTAGTGGTTACCTAATACCACGGACTAAAGATTGCAAAAAGCGCGCTTGTCAGAGTTCAGGATCGGTTGAGTCTACACAGTCCTGTTGGAAATCCTTTTACAAAGCGGAAGTTGCTTCTAGTGAAGTCAATAAAGATTATAAGGTTAACGCCAACCCTTTAACAATCTCCACAATAGAACAAAATAAAGAAACACTTTTGACTGAAATTAGGAGCCGAATAAGTAGTTTTTGGTTTCTGTCTTTTTGGTTGAAAACTTCATTCATCCCGTTTTGCTTCGATAGATGAAATGAATTCACGCACATTATATTTACGTANATTACCACGAAATACAAGTCTTTCTCAGCTGNAAGCATTGTGTCGTAATTCAGCANAT] consensusID : consensus_7892#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [CCGTCTGGTCACTTAAAACATGGGCATTGTCGTGTTATATTTACCAATCAAAAAGACGCTCTTGAAGCATTCAATACACGACATGGAGTTGTCCTCCATGATACGCCAATTAACTTAAACTTTGACCTAAGGAGTCGTAGATCTTCACTTTTAGTCCGTGTACCAAACGTTTCAACATTTACTGATCCAAAGGTTCTGTCAAACGAAAAGCCGAAACGGAAAAGCAGAAAAAGTAATTCTCATTTAAATCAGCAACGAAGTGTGGAGATTAAGTCTCTAGCTGAATCACCAAGTGATCCTGTTAAGAATTCAAACCTTAAGCCAAATAAAAGCAAGAAAAAAAAGTACAAAAATGAGAGTGCCTCTAGTGGTTCAATTCAGTTTTCGTTGGCTACTAACTATGGACATCAAGTTTTTAAACCAGTACCGAAAAAGCGAAAATTGGTGTAGTATGGAAACACTTATGCGTTCGTTAACTTTAGCCTGAAGTTTAATAAATAAAATAAAATTT] [-] EMBL CD073032 [CCGTCTGGTCACTTAAAACATGGGCATTGTCGTGTTATATTTACCAATCAAAAAGACGCTCTTGAAGCATTCAATACACGACATGGAGTTGTCCTCCATGATACGCCAATTAACTTAAACTTTGACCTAAGGAGTCGTAGATCTTCACTTTTAGTCCGTGTACCAAACGTTTCAACATTTACTGATCCAAAGGTTCTGTCAAACGAAAAGCCGAAACGGAAAAGCAGAAAAAGTAATTCTCATTTAAATCAGCAACGAAGTGTGGAGATTAAGTCTCTAGCTGAATCACCAAGTGATCCTGTTAAGAATTCAAACCTTAAGCCAAATAAAAGCAAGAAAAAAAAGTACAAAAATGAGAGTGCCTCTAGTGGTTCAATTCAGTTTTCGTTGGCTACTAACTATGGACATCAAGTTTTTAAACCAGTACCGAAAAAGCGAAAATTGGTGTAGTATGGAAACACTTATGCGTTCGTTAACTTTAGCCTGAAGTTTAATAAATAAAATAAAATTT] consensusID : consensus_7892#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [CTGTTAGCCAATATTGTAATCTAATCATTGACTTCTTGATCTGGTAGATTAGCACTTGTGGAGTATAATTCACGTGAAGCAGCATTGTCTAGTCTTAAGTCATTGGGTGACAAATTTTTAGGAGATATTCCTGTTGCTGTGGCGTTGTGTTCTGAGCGCTGTAAATCTCCGTCTAATAGTTGGAGGCCACCACAATCATATGAACTAAGTGATTTTAATGTGAATAAACTGTATGTAGCAGGTATCAATCGTCGATCACCTGCACAGGAAATTCGGGACCTATTTCCTAACGCTGAGTCTTTTGACTTCATTGTACACTGAACGTGCTGCTGTGGTTAGTAACCATTATTTGATAGTGTTATTGTTTAGTGCATAAGATATTCTATAGTCATTTATTGTTATTCATAGCATTATAGTGTTCATCTAATGATAAAGATTAGTATCTGTTTAAATAA] [-] EMBL CD196710 [CTGTTAGCCAATATTGTAATCTAATCATTGACTTCTTGATCTGGTAGATTAGCACTTGTGGAGTATAATTCACGTGAAGCAGCATTGTCTAGTCTTAAGTCATTGGGTGACAAATTTTTAGGAGATATTCCTGTTGCTGTGGCGTTGTGTTCTGAGCGCTGTAAATCTCCGTCTAATAGTTGGAGGCCACCACAATCATATGAACTAAGTGATTTTAATGTGAATAAACTGTATGTAGCAGGTATCAATCGTCGATCACCTGCACAGGAAATTCGGGACCTATTTCCTAACGCTGAGTCTTTTGACTTCATTGTACACTGAACGTGCTGCTGTGGTTAGTAACCATTATTTGATAGTGTTATTGTTTAGTGCATAAGATATTCTATAGTCATTTATTGTTATTCATAGCATTATAGTGTTCATCTAATGATAAAGATTAGTATCTGTTTAAATAA] consensusID : consensus_7892#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence [ATGGAGGTAAGTGGAACTCAGTAATCAGACATACACTTGCTTTCTTATATTGTTATTAGCGATTTATTCACCCCATTAGTGATGCAGCCTTTCATTTGAAGTCAGTTGACTATTATTTGTACTCCCACAACAGCAGNTCCATAATATCTCTGAGTCTCCTGCCATTTTTTTAAAGGCATTCGCCGCGTTATATTTACCAACCACAAAGACGCTCTTGAAGCATTCCATACACGACATGGAGTTGTCCTCCATGATACGCCAAT] [+] EMBL CD145737 [ATGGAGGTAAGTGGAACTCAGTAATCAGACATACACTTGCTTTCTTATATTGTTATTAGCGATTTATTCACCCCATTAGTGATGCAGCCTTTCATTTGAAGTCAGTTGACTATTATTTGTACTCCCACAACAGCAGNTCCATAATATCTCTGAGTCTCCTGCCATTTTTTTAAAGGCATTCGCCGCGTTATATTTACCAACCACAAAGACGCTCTTGAAGCATTCCATACACGACATGGAGTTGTCCTCCATGATACGCCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7892#0 GAGGGCCTAATACCACGGACTAAAGATTGCAAAAAGCGCGCTTGTCAGAGTTCAGGATCG 60 consensus_7892#2 ------------------------------------------------------------ consensus_7892#3 ------------------------------------------------------------ consensus_7892#4 ------------------------------------------------------------ consensus_7892#1 ------------------------------------------------------------ consensus_7892#0 GTTGAGTCTACACAGTCCTGTTGGAAATCCTTTTACAAAGCGGAAGTTGCTTCTAGTGAA 120 consensus_7892#2 ------------------------------------------------------------ consensus_7892#3 ------------------------------------------------------------ consensus_7892#4 ------------------------------------------------------------ consensus_7892#1 ------------------------------------------------------------ consensus_7892#0 GTCAATAAAGATTATAAGCAGGTTAACGCCAACCCTTTAACAATCTCCACAATAGAACAA 180 consensus_7892#2 ------------------------------------------------------------ consensus_7892#3 ------------------------------------------------------------ consensus_7892#4 ------------------------------------------------------------ consensus_7892#1 ------------------------------------------------------------ consensus_7892#0 AATAAAGAAACACTTTTGACTGAAATTAGGAGCCGAATAAATTAGCACTTGTGGAGTATA 240 consensus_7892#2 ------------------------------------------------------------ consensus_7892#3 ------------------------------------------------------------ consensus_7892#4 ------------------------------------------------------------ consensus_7892#1 ------------------------------------------------------------ consensus_7892#0 ATTCACGTGAAGCAGCATTGTCTAGTCTTAAGTCATTGGGTGACAAATTTTTTGGAGATA 300 consensus_7892#2 ------------------------------------------------------------ consensus_7892#3 ------------------------------------------------------------ consensus_7892#4 ------------------------------------------------------------ consensus_7892#1 ------------------------------------------------------------ consensus_7892#0 TTCCTGTTGCTGTGGCGTTGTGTTCTGAGCGCTGTAAATCTCCGTCTAATAGTTGGAGGC 360 consensus_7892#2 ------------------------------------------------------------ consensus_7892#3 ------------------------------------------------------------ consensus_7892#4 ------------------------------------------------------------ consensus_7892#1 ------------------------------------------------------------ consensus_7892#0 CACCACAATCATATGAACTAAGTGATTTTAATTTGAATAAACTGTATGTAGCAGGTATCA 420 consensus_7892#2 ------------------------------------------------------------ consensus_7892#3 ------------------------------------------------------------ consensus_7892#4 ------------------------------------------------------------ consensus_7892#1 --------------TTTGTTGCATGATCACTCCTGCTCCCAAGCGAACGCTAATATATGA 46 consensus_7892#0 ATCGTCGATCAACTGAACAGGAAATTCGGGACCTATTTCCTAACGCTGAGTCTTTTGACT 480 consensus_7892#2 --------------------------------------------------CCGTCTGGTC 10 consensus_7892#3 -----------------------------------------------------------C 1 consensus_7892#4 ------------------------------------------------------------ consensus_7892#1 CGTGCTACAATTTGTAACGGATTTGGAAAGTTACTTTGTCAGCTTCTGTTTCCGGTTATC 106 consensus_7892#0 TCATTGTACATGAACGTGCTCTGTGGCATTGTCGTGTTATATTTACCAATCAAAAAGAC- 539 consensus_7892#2 ACTTAAAACATG------------GGCATTGTCGTGTTATATTTACCAATCAAAAAGAC- 57 consensus_7892#3 TGTTAGCCAATA-----------TTGTAATCTAATCATTGACTTCTTGATCTGGTAGATT 50 consensus_7892#4 -------------------------ATGGAGGTAAGTGGAACTCAGTAATCAGACATACA 35 consensus_7892#1 ACTTTGTTT-TATCTCACCTTCGCGTTGTTCATAATTGCTGTCGATTGCTTTCTTTGTTA 165 * consensus_7892#0 ---GCTCTTGAAGCATTCAATACACGACATGGAGTTGTCCTCCATGATACGCCAATTAAC 596 consensus_7892#2 ---GCTCTTGAAGCATTCAATACACGACATGGAGTTGTCCTCCATGATACGCCAATTAAC 114 consensus_7892#3 A--GCACTTGTGGAGTATAATTCACGTGAAGCAGCATTGTCTAGTCTTAAGTCATTGGGT 108 consensus_7892#4 CTTGCTTTCTTATATTGTTATTAGCGATTTATTCACCCCATTAGTGATGCAGCCTTTCAT 95 consensus_7892#1 AGAGCTTTTAGTTATGGTTGAAAGCATTCCAGGGACTTCAAGAAGTGTACA-TAATGCAC 224 ** * * * * consensus_7892#0 TTAAACTTTGACCTAAGGAGTCGTAGATCTTCACTTTTAGTCCGTGTACCANACG---TT 653 consensus_7892#2 TTAAACTTTGACCTAAGGAGTCGTAGATCTTCACTTTTAGTCCGTGTACCAAACG---TT 171 consensus_7892#3 GACAAATTT----TTAGGAGATATTCCTGTT-GCTGTGGCGTTGTGTTCTGAGCG---CT 160 consensus_7892#4 TTGAAGTCAG---TTGACTATTATTTGTACT-CCCACAACAGCAGNTCCATAATA---TC 148 consensus_7892#1 CTAAAGTTCCTACTAGTGGTTACCTAATACCACGGACTAAAGATTGCAAAAAGCGCGCTT 284 ** * * * consensus_7892#0 TCAACATTTACTGATCCAAAGGGTCTGTCAAACGAAAAGCCGAAACGGAAAAGCAGAAAA 713 consensus_7892#2 TCAACATTTACTGATCCAAAGGTTCTGTCAAACGAAAAGCCGAAACGGAAAAGCAGAAAA 231 consensus_7892#3 GTAA-ATCTCC--GTCTAATAGTT----------GGAGGCCACCACAATCATATGAACTA 207 consensus_7892#4 TCTGAGTCTCC-----TGCCATTTTTTTAAAGGCATTCGCCGCGTTATATTTACCAACCA 203 consensus_7892#1 GTCAGAGTTCAGGATCGGTTGAGTCTACACAG-TCCTGTTGGAAATCCTTTTACAAAGCG 343 * * * consensus_7892#0 AGTAATTCTCAT-TTAAAATCAGCA-----CGAAGTGTGGAGAATAAGTCTCTAGCTGAA 767 consensus_7892#2 AGTAATTCTCAT-TTAAA-TCAGCAA----CGAAGTGTGGAGATTAAGTCTCTAGCTGAA 285 consensus_7892#3 AGTGATTTTAAT-GTGAA-TAAACTG----TATGTAGCAGGTATCAATCGTCGATCACCT 261 consensus_7892#4 CA-AAGACGCTC-TTGAAGCATTCCA----TACACGACATGGAGTTGTCCTCCAT--GAT 255 consensus_7892#1 GAAGTTGCTTCTAGTGAAGTCAATAAAGATTATAAGGTTAACGCCAACCCTTTAACAATC 403 * ** * * consensus_7892#0 TCACCAAGTGATCCTGGNTAGAATNCAA-CCTTNAGNCCAATANNAGCAG---AAAAAAG 823 consensus_7892#2 TCACCAAGTGATCCTGTTAAGAATTCAAACCTTAAGCCAAATAAAAGCAAGAAAAAAAAG 345 consensus_7892#3 GCACAGGAAATTCGGGACCTATTTCCTAACGCTGAGTCTTTTGACTTCAT--------TG 313 consensus_7892#4 ACGCCAAT---------------------------------------------------- 263 consensus_7892#1 TCCACAATAGAACAAAATAAAGAAACACTTTTGACTGAAATTAGGAGCCG----AATAAG 459 * consensus_7892#0 TNCAAAA-TGANAGTGC-TCTAGTGGT-CAANTCANTTTCG--TGGC--TACTA-CTATG 875 consensus_7892#2 TACAAAAATGAGAGTGCCTCTAGTGGTTCAATTCAGTTTTCGTTGGC--TACTAACTATG 403 consensus_7892#3 TACAC---TGAACGTGCTGCTGTGGTTAGTAACCATTATTTGATAGTGTTATTGTTTA-G 369 consensus_7892#4 ------------------------------------------------------------ consensus_7892#1 TAGTTTTTGGTTTCTGTCTTTTTGGTTGAAAACTTCATTCATCCCGT---TTTGCTTCGA 516 consensus_7892#0 GA-ATCANGTTT----AACAGTAC---GAAAGCGAAA-----TGGGAGATGGAA---CCT 919 consensus_7892#2 GACATCAAGTTTTTAAACCAGTACCGAAAAAGCGAAAATTGGTGTAGTATGGAAACACTT 463 consensus_7892#3 TGCATAAGATAT-----TCTATAGTCATTTATTGTTATT---CATAGCATTATAGTGTTC 421 consensus_7892#4 ------------------------------------------------------------ consensus_7892#1 TAGATGAAATGAATTCACGCACATTATATTTACGTANATTACCACGAAATACAAGTCTTT 576 consensus_7892#0 ATG-----GTCGTACTTAGC--GAAGTATAAAATA------------- 947 consensus_7892#2 ATGCGTTCGTTAACTTTAGCCTGAAGTTTAATAAATAAAATAAAATTT 511 consensus_7892#3 ATCTAATGATAAAGATTAGTATCTGTTTAAATAA-------------- 455 consensus_7892#4 ------------------------------------------------ consensus_7892#1 CTCAGCT-GNAAGCATTGTGTCGTAATTCAGCANAT------------ 611 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||