These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7895#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 633 fasta sequence [TCTCTGGCCAANATTCGGCACGAGGCCCGGACCCGTTTCGAGGCTATTTTGGCCTTATGCACTGCACAGTTTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAATACCTGAAGAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACAGCTTGTAAACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGATGCCATCAAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCTTAGGTGCAACGGTGTAGAAACTCAAAGTCATCCTATTATGCAGGAATTGGATCGTGTAATGAATGCGTTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACTGGACAAAGAAGCTACAACAAGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAAAACTAAGAAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTTAAGTGGGAAGACCTTTATTTTGTTTCGTTTTGTATGTATACAAACGAATTAGCAATCAAATGTAAATTTATACTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CD080757 [TCTCTGGCCAANATTCGGCACGAGGCCCGGACCCGTTTCGAGGCTATTTTGGCCTTATGCACTGCACAGTTTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAATACCTGAAGAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACAGCTTGTAAACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGATGCCATCAAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCTTAGGTGCAACGGTGTAGAAACTCAAAGTCATCCTATTATGCAGGAATTGGATCGTGTAATGAATGCGTTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACTGGACAAAGAAGCTACAACAAGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAAAACTAAGAAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTTAAGTGGGAAGACCTTTATTTTGTTTCGTTTTGTATGTATACAAACGAATTAGCAATCAAATGTAAATTT ] [-] EMBL CD074681 [ CCGGACCCGTTTCGAGGCTATTTTGGCCTTATGCACTGCACAGTTTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAATACCTGAAGAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACAGCTTGTAAACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGATGCCATCAAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCTTAGGTGCAACGGTGTAGAAACTCAAAGTCATCCTATTATGCAGGAATTGGATCGTGTAATGAATGCGTTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACTGGACAAAGAAGCTACAACAAGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAAAACTAAGAAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTTAAGTGGGAAGACCTTTATTTTGTTTCGTTTTGTATGTATACAAACGAATTAGCAATCAAATGTAAATTTA ] [-] EMBL AI394840 [ aAACTTTCCCAATGATAATAATACTGAGGTTAGTGATTTGGATACCATCAAAACTGATCTGTCGTTATGATACGCCATCAATGCTTTGTCTTTCATGTATCTTAGGTGCAACGGTGTAGAAACTCAAAGTCATCTTATTATGCAGGAATTGGATCGTGTAATGAATGCGTTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACTGGACAAAGAAGCTACACCAGGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAAAACTAAGAAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTTAAGTGGGAAGACCTTTATTTTGTTTCGTTTTGTATGTATACAAACGAATTAGCAATCAAATGTAAATTTATACTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_7895#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 534 fasta sequence [GAGGCCGATCAAGGTCGTGGAGGCAAAATTGACCCGGACCCGTTTCGAGGCTATTTTGGCCTTATGCACTGCACAGTCTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAATACCTGAAGAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACAGCTTGTAAACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGATGCCATCAAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCTTAGGTGCAACGGTGTAGAAACTCAAAGTCATCCTATTATGCAGGAATTGGATCGTGTAATGAATGCGTTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACTGGACAAAGAAGCTACAACAAGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAAAACTAAGAAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTT] [+] EMBL BF937033 [GAGGCCGATCAAGGTCGTGGAGGCAAAATTGACCCGGACCCGTTTCGAGGCTATTTTGGCCTTATGCACTGCACAGTCTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAATACCTGAAGAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACAGCTTGTAAACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGATGCCATCAAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCTTAGGTGCAACGGTGTAGAAACTCAAAGTCATCCTATTATGCAGGAATTGGATCGTGTAATGAATGCGTTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACTGGACAAAGAAGCTACAACAAGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAAAACTAAGAAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTT] [+] EMBL SMAA18475 [ AGTCTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAATACCTGAAGAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACAGCTTGTAAACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGATGCCATCAAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCTNAGGTGCAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7895#0 -TCTCTGGCCAANATTC----GGCACGA--GGCCCGGACCCGTTTCGAGGCTATTTTGGC 53 consensus_7895#1 GAGGCCGATCAAGGTCGTGGAGGCAAAATTGACCCGGACCCGTTTCGAGGCTATTTTGGC 60 * * *** * **** * * **************************** consensus_7895#0 CTTATGCACTGCACAGTTTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAAT 113 consensus_7895#1 CTTATGCACTGCACAGTCTTATTGACTTGGAATGGTTGACAGCAGCATTTTCGATGAAAT 120 ***************** ****************************************** consensus_7895#0 ACCTGAAGAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACA 173 consensus_7895#1 ACCTGAAGAAATAAGCGCTCAGTTAGTTTCTTTTTCAGAAGCTACTGATGATGTTGAACA 180 ************************************************************ consensus_7895#0 GCTTGTAAACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGA 233 consensus_7895#1 GCTTGTAAACAAAATTAGCAACTTTTCCAATGATTCTAATACTGAGGTTAGTGATTTGGA 240 ************************************************************ consensus_7895#0 TGCCATCAAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCT 293 consensus_7895#1 TGCCATCAAAACTGATCTGTCGTTATGCTACGCCTTCAATGCTTTGTTTTTCATGTATCT 300 ************************************************************ consensus_7895#0 TAGGTGCAACGGTGTAGAAACTCAAAGTCATCCTATTATGCAGGAATTGGATCGTGTAAT 353 consensus_7895#1 TAGGTGCAACGGTGTAGAAACTCAAAGTCATCCTATTATGCAGGAATTGGATCGTGTAAT 360 ************************************************************ consensus_7895#0 GAATGCGTTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACT 413 consensus_7895#1 GAATGCGTTGAAAAGGTGTAGATCGCTAGTAGAAAAAGAAGGCTCTGCACGTTTGAAACT 420 ************************************************************ consensus_7895#0 GGACAAAGAAGCTACAACAAGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAA 473 consensus_7895#1 GGACAAAGAAGCTACAACAAGATTTGTAAAACATGCCTTATGGAAATCTGCTCATACCAA 480 ************************************************************ consensus_7895#0 AACTAAGAAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTTAAGTGG 533 consensus_7895#1 AACTAAGAAACGTCGCATGGATTCATCTACTTAGTATTGTTAATGATAATTCTT------ 534 ****************************************************** consensus_7895#0 GAAGACCTTTATTTTGTTTCGTTTTGTATGTATACAAACGAATTAGCAATCAAATGTAAA 593 consensus_7895#1 ------------------------------------------------------------ consensus_7895#0 TTTATACTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA 633 consensus_7895#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||