These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7899#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 711 fasta sequence [TTTGATGCTGAGAGAAACGCCGAAAATATCGCATACACGAAAAGGGTTGGTTTCTATGGTGGACAATGGATCTGGACAGCATGGTTCTCATTTCTTCATAACTTTAGGAGATGATCTTAATTACCTGGATGACACGCATACAGTTTTCGGCTATATTGCTGAGGGAATGGATTTCGTTGAAAAGATAAATGAAGTGTACTGTGACAAAAATGGCCGGCCGTTTCGAAATGTCAGGATACATCATACAATTGTTATTGATGACCCATTTGATACACCGAAAATGATTCGTTATCCTGACTCTCCACAGTCAATAAGTATCTCAACATTTAATACTAGGTTAGAAGAGGATGAAGAGCTAGATGATACGGAAGGACTTTCACTTACACAGTTGGGGGAACTGAGGGCAGAGCAAGAAGTTAAAACTCATACTCAGCTACTTACGCTGATAGGCGATTTGCCAGATGCTAATGTTAAACCTCCAAATAATGTACTTTCTGTGTGTAAACTTAATCCTGTAACTACAAGCGAGGATTTGGGAATCATTTTCAGTCGGTTTGGTGAGATCAAATCATGTGAAGTAATTAGAGATAAACGTACTGGTGCTTCTCTTCAGTATGCTTTCATAGAATATGAGAAAGAAGCTGATTGTGAAGATGCATATTTCAAGATGGACAAAGTCGTTATTGATGATAGACGTATTCATGTGGATCT] [+] EMBL CD197570 [TTTGATGCTGAGAGAAACGCCGAAAATATCGCATACACGAAAAGGGTTGGTTTCTATGGTGGACAATGGATCTGGACAGCATGGTTCTCATTTCTTCATAACTTTAGGAGATGATCTTAATTACCTGGATGACACGCATACAGTTTTCGGCTATATTGCTGAGGGAATGGATTTCGTTGAAAAGATAAATGAAGTGTACTGTGACAAAAATGGCCGGCCGTTTCGAAATGTCAGGATACATCATACA ] [-] EMBL CD168448 [ GATGCTGAGAGACAC CCGAAAATATCGCATACACGCAAAGGGTTGGTTTCTATGGCGGACAATGGATCTGGACAGCATGGTTCTCAATTCTTCATAACTTTGGGAGATGATgctggacg ] [+] EMBL CD168656 [ GTACTGTGACAAAAATGGCCGGCCGTTTCGAAATGTCAGGATACATCATACAATTGTTATTGATGACCCATTTGATACACCGAAAATGATTCGTTATCCTGACTCTCCACAGTCAATAAGTATCTCAACATTTAATACTAGGTTAGAAGAGGATGAAGAGCTAGATGATACGGAAGGACTTTCACTTACACAGTTGGGGGAACTGAGGGCAGAGCAAGAAGTTAAAACTCATACTCAGCTACTTACGCTGATAGGCGATTTGCCAGATGCTAATGTTAAACCTCCAAATAATGTACTTTCTGTGTGTAAACTTAATCCTGTAACTACAAGCGAGGATTTGGGAATCATTTTCAGTCGGTTTGGTGAGATCAAATCATGTGAAGTAATTAGAGATAAACGTACTGGTGCTTCTCTTCAGTATGCTTTCATAGAATATGAGAAAGAAGCTGATTGTGAAGATGCATATTTCAAGATGGACAAAGTCGTTATTGATGATAGACGTATTCATGTGGATCT] consensusID : consensus_7899#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 431 fasta sequence [TTTGATACACCGAAAATGATTCGTTATCCTGACTCTCCACAGTCAATAAGTATCTCAACATTTGATACTAGATTAGAAGAGGATGAAGAGCTAGATGATACGGAAGGACTTTCACTTACACAGTTGGGGGAACTGAGGGCAGAGCAAGAAGTTAAAACTCATACTCAGCTACTTACGCTG-ATAGGCGATTTGCCAGATGCTAATGTTAAATCTCCATCTGTATTAGGTGAGGAATATGATTTGGTAATTTCAGATGAGTCTGATTCCTCATCATTATCGGTGAATTCCCAGGGAAAATCCAAATGGACAGACCATAGGCCAAATAAGTCCAGAAATCATCACAAAAAACACAAGGAGAGAAAAAGCAAACATAAGAAGCACCACTCACGACACTAACCATTGCAGCGAATTTTCGTTTTTGTTATTGTATA] [-] EMBL CD197295 [TTTGATACACCGAAAATGATTCGTTATCCTGACTCTCCACAGTCAATAAGTATCTCAACATTTGATACTAGATTAGAAGAGGATGAAGAGCTAGATGATACGGAAGGACTTTCACTTACACAGTTGGGGGAACTGAGGGCAGAGCAAGAAGTTAAAACTCATACTCAGCTACTTACGCTG ATAGGCGATTTGCCAGATGCTAATGTTAAATCTCCATCTGTATTAGGTGAGGAATATGATTTGGTAATTTCAGATGAGTCTGATTCCTCATCATTATCGGTGAATTCCCAGGGAAAATCCAAATGGACAGACCATAGGCCAAATAAGTCCAGAAATCATCACAAAAAACACAAGGAGAGAAAAAGCAAACATAAGAAGCACCACTCACGACACTAACCATTGCAGCGAATTTTCGTTTTTGTTATTGTATA] [-] EMBL CD197283 [ TTAGAAGAGGATGAAGAGCTAGATGATACGGAAGGACTTTCACTTACACAGTTGGGGGAACTGAGGGCAGAGCAAGAAGTTAAAACTCATACTCAGCTAC TACGCTGAATAGGCGATTTGCCAGATGCTAATGTTAAATCTCCATCTGTATTAGGTGAGGAATATGATTTGGTAATTTCAGATGAGTCTGATTCCTCATCATGATCGGTGAATTCCCAGGGAAAATCCAAATGGACAGACCATAGGCCAAATAAGTCCAGAAATCATCACAAAAAACACAAGGAGAGAAAAAGCAAACATAAGAAGCACCACTCACGACACTAACCATTGCAGCGAATTTTCGTTTTTGTTATTGTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7899#0 TTTGATGCTGAGAGAAACGCCGAAAATATCGCATACACGAAAAGGGTTGGTTTCTATGGT 60 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 GGACAATGGATCTGGACAGCATGGTTCTCATTTCTTCATAACTTTAGGAGATGATCTTAA 120 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 TTACCTGGATGACACGCATACAGTTTTCGGCTATATTGCTGAGGGAATGGATTTCGTTGA 180 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 AAAGATAAATGAAGTGTACTGTGACAAAAATGGCCGGCCGTTTCGAAATGTCAGGATACA 240 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 TCATACAATTGTTATTGATGACCCATTTGATACACCGAAAATGATTCGTTATCCTGACTC 300 consensus_7899#1 -------------------------TTTGATACACCGAAAATGATTCGTTATCCTGACTC 35 *********************************** consensus_7899#0 TCCACAGTCAATAAGTATCTCAACATTTAATACTAGGTTAGAAGAGGATGAAGAGCTAGA 360 consensus_7899#1 TCCACAGTCAATAAGTATCTCAACATTTGATACTAGATTAGAAGAGGATGAAGAGCTAGA 95 **************************** ******* *********************** consensus_7899#0 TGATACGGAAGGACTTTCACTTACACAGTTGGGGGAACTGAGGGCAGAGCAAGAAGTTAA 420 consensus_7899#1 TGATACGGAAGGACTTTCACTTACACAGTTGGGGGAACTGAGGGCAGAGCAAGAAGTTAA 155 ************************************************************ consensus_7899#0 AACTCATACTCAGCTACTTACGCTGATAGGCGATTTGCCAGATGCTAATGTTAAACCTCC 480 consensus_7899#1 AACTCATACTCAGCTACTTACGCTGATAGGCGATTTGCCAGATGCTAATGTTAAATCTCC 215 ******************************************************* **** consensus_7899#0 AAATAATGTACTTTCTGTGTGTAAACTTAATCCTGTAACTACAAGCGAGGAT--TTGGGA 538 consensus_7899#1 A-----TCTGTATTAGGTGAG-GAATATGATTTGGTAATTTCAGATGAGTCTGATTCCTC 269 * * * ** *** * ** * ** **** * ** *** * ** consensus_7899#0 ATCATTTTCAGTCGGTTTGGTGAGATCAAATCATGTGAAGTAATTAGAGATAAACGTACT 598 consensus_7899#1 ATCATTATCGGTGAATTCCCAGGGAA-AATCCAAATGGACAGACCATAGGCCAA------ 322 ****** ** ** ** * ** ** ** ** * * * ** ** consensus_7899#0 GGTGCTTCTCTTCAGTATGCTTTCATAGAATATGAGAAAGAAGCTGATTGTGAAGATGCA 658 consensus_7899#1 -ATAAGTCCAGAAATCATCACAAAAAACACAAGGAGAGAAAAAGCAAACAT-AAGAAGCA 380 * ** * ** * * * * **** * ** * * **** *** consensus_7899#0 TATTTCAAGATGGACAAAGTCGTTATTGATGATAGACGTATTCATGTGGATCT- 711 consensus_7899#1 CCACTCACGAC--ACTAA-CCATTGCAGCGAATTTTCGTTTTTGTTATTGTATA 431 *** ** ** ** * ** * ** *** ** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||