cluster # 7906

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Schistosoma mansoni
cluster # 7906 cluster # 7906 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7906#0 length = 805 sequences # 4

consensus_7906#1 length = 183 sequences # 1

consensusID : consensus_7906#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 805
fasta sequence

                              [GCCATAATTCGGCA-CGAGGTCTGTGCATACCTTTTTGTCGTAATGTTCCAGTACATCCATTAAA-CCATG-CATGGAAATCATACACTAGCTATTTATGTTAAGCTTCTAGGTTGCGCCCATGAAAACGACCTATCATTATTTTATGGTTCATTTTTCTATCAGATATTTGTATCCTAATATTTTTCCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAAAACTGTTTTGTTGTATTGCTCGCTGTTACTGTTATAAAAATGGGTGACACGGTTGGTCCCGCAGCCTATGTTCTTTTTGATGAACTATACACCAAAGAAAATGTCTTTCGCTCCATAATTACCAATAACAAAACTCTAAATATCCGTCTTCTAGGCAGATTTTCTGCCTTTGAAGCTGATAGCAATTTAGTTGAATTGTTGTCTCCATTTCAAGGTAGTGCTATTCCATGCGTTATCGTCAATGTAAAATATCTAACTGAAAACCAGAAGCAATGTTTTTCAACTCAGACAGCTAATGAACGCTTGATACAATTTATTGGGGAGTTAAGTGTATCAGACGATAGAAAACGTTATCACCTCACAGCGTTTTCATTTACTTTTATGGATGGTGTGAGTCTGGATTTATATAGAACTGTAACAAAGATAACTCGAAGTTATATTGCCTACTTACCGTCTGTGTGATTTATTTTGAAGC-TTTTTGTTACGTTTCATAACTGGTGTATATACTGGCATTACTCCTGTTTTTCCTATGTGGTAATTCAATGAGTTGTTGAAAAAATGAATAGATTGTGAGTAN]

[+] EMBL CD081651             [GCCATAATTCGGCA CGAGGTCTGTGCATACCTTTTTGTCGTAATGTTCCAGTACATCCATTAAANCCATGCCATGGAAATCATACACTAGCTATTTATGTTAAGCTTCTAGGTTGCGCCCATGAAAACGACCTATCATTATTTTATGGTTCATTTTTCTATCAGATATTTGTATCCTAATATTTTTGCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAAAACTGTTTTGTTGTATTGCTCGCTGTTACTGTTATAAAAATGGGTGACACGGTTGGTCCCGCAGCCTATGTTCTTTTTGATGAACTATACACCAAAGAAAATGTCTTTCGCTCCATAATTACCAATAACAAAACTCTAAATATCCGTCTTCTAGGCAGATTTTCTGCCTTTGAAGCTGATAGCAATTTAGTTGAATTGTTGTCTCCATTTCAAGGTAGTGCTATTCCATGCGTTATCGTCAATGTAAAATATCTAACTGAAAACCAGAAGCAATGTTTTTCAACTCAGACAGCTAATGAACGCTTGATACAATTTATTGGGGAGTTAAGTGTATCAGACGATAGAAAACGTTATCACCTCACAGCGTTTTCATTTACTTTTATGGATGGTGTGAGTCTGGATTTATATAGAACTGTAACAAAGATAACTCGAAGTTATATTGCCTACTTACCGTCTGTGTGATTTATTTTGAAGC TTTTTGTTACGTTTCATAACTGGTGTATATACTGGCATTACTCCTGTTTTTCCTATGTGGTAATTCAATGAGTTGTTGAAAAAATGAATAGATTGTGAGTAN]
[+] EMBL CD083467             [GCC TTATTC ACAGGGTGCTCTGTGCATACCTTTTTGTCGTAATGTTCCAGTACATCCATTAAA CCATG CATGGAAATCATACACTAGCTATTTATGTTAAGCTTCTAGGTTGCGCCCATGAAAACGACCTATCATTATTTTATGGTTCATTTTTCTATCAGATATTTGTATCCTAATATTTTTCCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAAAACTGTTTTGTTGTATTGCTCGCTGTTACTGTTATAAAAATGGGTGACACGGTTGGTCCCGCAGCCTATGTTCTTTTTGATGAACTATACACCAAAGAAAATGTCTTTCGCTCCATAATTACCAATAACAAAACTCTAAATATCCGTCTTCTAGGCAGATTTTCTGCCTTTGAAGCTGATAGCAATTTAGTTGAATTGTTGTCTCCATTTCAAGGTAGTGCTATTCCATGCGTTAT                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD061043             [                         GCATACCTCTTTGTCGTAATATTCCAGTACATCCATTAAA CCATG AATGGAAATCATACACTAGCTATTTATGTTAAGCTTCTGGGTTGCACCCATGAAAACGACCTATCATTATTTTATGGTTCATTTTTCTATCAGATATTTGTATCCTAATATTTTTCCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAGAACTGTTTTGTTGTATTGCTCGCTGTTACTGTTATAAAAATGGGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD077325             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTGGATTTATATAGAACTGTAACAAAGATAACTCGAAGTTATATTGCCTACTTCCCGTCTGTGTGATTTATTTTGAAGCTTTTTTGTTACGTTTCATAACTGGTGTATATACTGCAATTACTCCTGTTTTTCCTATGTGGTAATTCAATGAGTTGTTGAAAAAATGAATAGATTG       ]




>consensus_7906#0
GCCATAATTCGGCACGAGGTCTGTGCATACCTTTTTGTCGTAATGTTCCAGTACATCCAT
TAAACCATGCATGGAAATCATACACTAGCTATTTATGTTAAGCTTCTAGGTTGCGCCCAT
GAAAACGACCTATCATTATTTTATGGTTCATTTTTCTATCAGATATTTGTATCCTAATAT
TTTTCCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAAAACTGTTTTGTT
GTATTGCTCGCTGTTACTGTTATAAAAATGGGTGACACGGTTGGTCCCGCAGCCTATGTT
CTTTTTGATGAACTATACACCAAAGAAAATGTCTTTCGCTCCATAATTACCAATAACAAA
ACTCTAAATATCCGTCTTCTAGGCAGATTTTCTGCCTTTGAAGCTGATAGCAATTTAGTT
GAATTGTTGTCTCCATTTCAAGGTAGTGCTATTCCATGCGTTATCGTCAATGTAAAATAT
CTAACTGAAAACCAGAAGCAATGTTTTTCAACTCAGACAGCTAATGAACGCTTGATACAA
TTTATTGGGGAGTTAAGTGTATCAGACGATAGAAAACGTTATCACCTCACAGCGTTTTCA
TTTACTTTTATGGATGGTGTGAGTCTGGATTTATATAGAACTGTAACAAAGATAACTCGA
AGTTATATTGCCTACTTACCGTCTGTGTGATTTATTTTGAAGCTTTTTGTTACGTTTCAT
AACTGGTGTATATACTGGCATTACTCCTGTTTTTCCTATGTGGTAATTCAATGAGTTGTT
GAAAAAATGAATAGATTGTGAGTAN

consensusID : consensus_7906#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 183
fasta sequence

                              [ACCCATGAAAACTACCTATCATTATGTTATGGCTCATTTTTCTATCACATATTTGGATCCTGATATTTTTCCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAGAACTGTTTTGTTGTATTGCTCGCTGCTACTGCTCTAAAAATGGGTGACACGGTTGGTCCTGCGAACCTA]

[+] EMBL CD060806             [ACCCATGAAAACTACCTATCATTATGTTATGGCTCATTTTTCTATCACATATTTGGATCCTGATATTTTTCCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAGAACTGTTTTGTTGTATTGCTCGCTGCTACTGCTCTAAAAATGGGTGACACGGTTGGTCCTGCGAACCTA]




>consensus_7906#1
ACCCATGAAAACTACCTATCATTATGTTATGGCTCATTTTTCTATCACATATTTGGATCC
TGATATTTTTCCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAGAACTGT
TTTGTTGTATTGCTCGCTGCTACTGCTCTAAAAATGGGTGACACGGTTGGTCCTGCGAAC
CTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7906#0      GCCATAATTCGGCACGAGGTCTGTGCATACCTTTTTGTCGTAATGTTCCAGTACATCCAT 60
consensus_7906#1      ------------------------------------------------------------
                                                                                  

consensus_7906#0      TAAACCATGCATGGAAATCATACACTAGCTATTTATGTTAAGCTTCTAGGTTGCGCCCAT 120
consensus_7906#1      ------------------------------------------------------ACCCAT 6
                                                                             *****

consensus_7906#0      GAAAACGACCTATCATTATTTTATGGTTCATTTTTCTATCAGATATTTGTATCCTAATAT 180
consensus_7906#1      GAAAACTACCTATCATTATGTTATGGCTCATTTTTCTATCACATATTTGGATCCTGATAT 66
                      ****** ************ ****** ************** ******* ***** ****

consensus_7906#0      TTTTCCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAAAACTGTTTTGTT 240
consensus_7906#1      TTTTCCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAGAACTGTTTTGTT 126
                      *********************************************** ************

consensus_7906#0      GTATTGCTCGCTGTTACTGTTATAAAAATGGGTGACACGGTTGGTCCCGC-AGCCTATGT 299
consensus_7906#1      GTATTGCTCGCTGCTACTGCTCTAAAAATGGGTGACACGGTTGGTCCTGCGAACCTA--- 183
                      ************* ***** * ************************* ** * ****   

consensus_7906#0      TCTTTTTGATGAACTATACACCAAAGAAAATGTCTTTCGCTCCATAATTACCAATAACAA 359
consensus_7906#1      ------------------------------------------------------------
                                                                                  

consensus_7906#0      AACTCTAAATATCCGTCTTCTAGGCAGATTTTCTGCCTTTGAAGCTGATAGCAATTTAGT 419
consensus_7906#1      ------------------------------------------------------------
                                                                                  

consensus_7906#0      TGAATTGTTGTCTCCATTTCAAGGTAGTGCTATTCCATGCGTTATCGTCAATGTAAAATA 479
consensus_7906#1      ------------------------------------------------------------
                                                                                  

consensus_7906#0      TCTAACTGAAAACCAGAAGCAATGTTTTTCAACTCAGACAGCTAATGAACGCTTGATACA 539
consensus_7906#1      ------------------------------------------------------------
                                                                                  

consensus_7906#0      ATTTATTGGGGAGTTAAGTGTATCAGACGATAGAAAACGTTATCACCTCACAGCGTTTTC 599
consensus_7906#1      ------------------------------------------------------------
                                                                                  

consensus_7906#0      ATTTACTTTTATGGATGGTGTGAGTCTGGATTTATATAGAACTGTAACAAAGATAACTCG 659
consensus_7906#1      ------------------------------------------------------------
                                                                                  

consensus_7906#0      AAGTTATATTGCCTACTTACCGTCTGTGTGATTTATTTTGAAGCTTTTTGTTACGTTTCA 719
consensus_7906#1      ------------------------------------------------------------
                                                                                  

consensus_7906#0      TAACTGGTGTATATACTGGCATTACTCCTGTTTTTCCTATGTGGTAATTCAATGAGTTGT 779
consensus_7906#1      ------------------------------------------------------------
                                                                                  

consensus_7906#0      TGAAAAAATGAATAGATTGTGAGTAN 805
consensus_7906#1      --------------------------