These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7906#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 805 fasta sequence [GCCATAATTCGGCA-CGAGGTCTGTGCATACCTTTTTGTCGTAATGTTCCAGTACATCCATTAAA-CCATG-CATGGAAATCATACACTAGCTATTTATGTTAAGCTTCTAGGTTGCGCCCATGAAAACGACCTATCATTATTTTATGGTTCATTTTTCTATCAGATATTTGTATCCTAATATTTTTCCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAAAACTGTTTTGTTGTATTGCTCGCTGTTACTGTTATAAAAATGGGTGACACGGTTGGTCCCGCAGCCTATGTTCTTTTTGATGAACTATACACCAAAGAAAATGTCTTTCGCTCCATAATTACCAATAACAAAACTCTAAATATCCGTCTTCTAGGCAGATTTTCTGCCTTTGAAGCTGATAGCAATTTAGTTGAATTGTTGTCTCCATTTCAAGGTAGTGCTATTCCATGCGTTATCGTCAATGTAAAATATCTAACTGAAAACCAGAAGCAATGTTTTTCAACTCAGACAGCTAATGAACGCTTGATACAATTTATTGGGGAGTTAAGTGTATCAGACGATAGAAAACGTTATCACCTCACAGCGTTTTCATTTACTTTTATGGATGGTGTGAGTCTGGATTTATATAGAACTGTAACAAAGATAACTCGAAGTTATATTGCCTACTTACCGTCTGTGTGATTTATTTTGAAGC-TTTTTGTTACGTTTCATAACTGGTGTATATACTGGCATTACTCCTGTTTTTCCTATGTGGTAATTCAATGAGTTGTTGAAAAAATGAATAGATTGTGAGTAN] [+] EMBL CD081651 [GCCATAATTCGGCA CGAGGTCTGTGCATACCTTTTTGTCGTAATGTTCCAGTACATCCATTAAANCCATGCCATGGAAATCATACACTAGCTATTTATGTTAAGCTTCTAGGTTGCGCCCATGAAAACGACCTATCATTATTTTATGGTTCATTTTTCTATCAGATATTTGTATCCTAATATTTTTGCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAAAACTGTTTTGTTGTATTGCTCGCTGTTACTGTTATAAAAATGGGTGACACGGTTGGTCCCGCAGCCTATGTTCTTTTTGATGAACTATACACCAAAGAAAATGTCTTTCGCTCCATAATTACCAATAACAAAACTCTAAATATCCGTCTTCTAGGCAGATTTTCTGCCTTTGAAGCTGATAGCAATTTAGTTGAATTGTTGTCTCCATTTCAAGGTAGTGCTATTCCATGCGTTATCGTCAATGTAAAATATCTAACTGAAAACCAGAAGCAATGTTTTTCAACTCAGACAGCTAATGAACGCTTGATACAATTTATTGGGGAGTTAAGTGTATCAGACGATAGAAAACGTTATCACCTCACAGCGTTTTCATTTACTTTTATGGATGGTGTGAGTCTGGATTTATATAGAACTGTAACAAAGATAACTCGAAGTTATATTGCCTACTTACCGTCTGTGTGATTTATTTTGAAGC TTTTTGTTACGTTTCATAACTGGTGTATATACTGGCATTACTCCTGTTTTTCCTATGTGGTAATTCAATGAGTTGTTGAAAAAATGAATAGATTGTGAGTAN] [+] EMBL CD083467 [GCC TTATTC ACAGGGTGCTCTGTGCATACCTTTTTGTCGTAATGTTCCAGTACATCCATTAAA CCATG CATGGAAATCATACACTAGCTATTTATGTTAAGCTTCTAGGTTGCGCCCATGAAAACGACCTATCATTATTTTATGGTTCATTTTTCTATCAGATATTTGTATCCTAATATTTTTCCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAAAACTGTTTTGTTGTATTGCTCGCTGTTACTGTTATAAAAATGGGTGACACGGTTGGTCCCGCAGCCTATGTTCTTTTTGATGAACTATACACCAAAGAAAATGTCTTTCGCTCCATAATTACCAATAACAAAACTCTAAATATCCGTCTTCTAGGCAGATTTTCTGCCTTTGAAGCTGATAGCAATTTAGTTGAATTGTTGTCTCCATTTCAAGGTAGTGCTATTCCATGCGTTAT ] [+] EMBL CD061043 [ GCATACCTCTTTGTCGTAATATTCCAGTACATCCATTAAA CCATG AATGGAAATCATACACTAGCTATTTATGTTAAGCTTCTGGGTTGCACCCATGAAAACGACCTATCATTATTTTATGGTTCATTTTTCTATCAGATATTTGTATCCTAATATTTTTCCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAGAACTGTTTTGTTGTATTGCTCGCTGTTACTGTTATAAAAATGGGTGA ] [-] EMBL CD077325 [ CTGGATTTATATAGAACTGTAACAAAGATAACTCGAAGTTATATTGCCTACTTCCCGTCTGTGTGATTTATTTTGAAGCTTTTTTGTTACGTTTCATAACTGGTGTATATACTGCAATTACTCCTGTTTTTCCTATGTGGTAATTCAATGAGTTGTTGAAAAAATGAATAGATTG ] consensusID : consensus_7906#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 183 fasta sequence [ACCCATGAAAACTACCTATCATTATGTTATGGCTCATTTTTCTATCACATATTTGGATCCTGATATTTTTCCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAGAACTGTTTTGTTGTATTGCTCGCTGCTACTGCTCTAAAAATGGGTGACACGGTTGGTCCTGCGAACCTA] [+] EMBL CD060806 [ACCCATGAAAACTACCTATCATTATGTTATGGCTCATTTTTCTATCACATATTTGGATCCTGATATTTTTCCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAGAACTGTTTTGTTGTATTGCTCGCTGCTACTGCTCTAAAAATGGGTGACACGGTTGGTCCTGCGAACCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7906#0 GCCATAATTCGGCACGAGGTCTGTGCATACCTTTTTGTCGTAATGTTCCAGTACATCCAT 60 consensus_7906#1 ------------------------------------------------------------ consensus_7906#0 TAAACCATGCATGGAAATCATACACTAGCTATTTATGTTAAGCTTCTAGGTTGCGCCCAT 120 consensus_7906#1 ------------------------------------------------------ACCCAT 6 ***** consensus_7906#0 GAAAACGACCTATCATTATTTTATGGTTCATTTTTCTATCAGATATTTGTATCCTAATAT 180 consensus_7906#1 GAAAACTACCTATCATTATGTTATGGCTCATTTTTCTATCACATATTTGGATCCTGATAT 66 ****** ************ ****** ************** ******* ***** **** consensus_7906#0 TTTTCCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAAAACTGTTTTGTT 240 consensus_7906#1 TTTTCCCTCGAATAAAATATCTGACTACTTTTCTGTTTATTTACACAGAACTGTTTTGTT 126 *********************************************** ************ consensus_7906#0 GTATTGCTCGCTGTTACTGTTATAAAAATGGGTGACACGGTTGGTCCCGC-AGCCTATGT 299 consensus_7906#1 GTATTGCTCGCTGCTACTGCTCTAAAAATGGGTGACACGGTTGGTCCTGCGAACCTA--- 183 ************* ***** * ************************* ** * **** consensus_7906#0 TCTTTTTGATGAACTATACACCAAAGAAAATGTCTTTCGCTCCATAATTACCAATAACAA 359 consensus_7906#1 ------------------------------------------------------------ consensus_7906#0 AACTCTAAATATCCGTCTTCTAGGCAGATTTTCTGCCTTTGAAGCTGATAGCAATTTAGT 419 consensus_7906#1 ------------------------------------------------------------ consensus_7906#0 TGAATTGTTGTCTCCATTTCAAGGTAGTGCTATTCCATGCGTTATCGTCAATGTAAAATA 479 consensus_7906#1 ------------------------------------------------------------ consensus_7906#0 TCTAACTGAAAACCAGAAGCAATGTTTTTCAACTCAGACAGCTAATGAACGCTTGATACA 539 consensus_7906#1 ------------------------------------------------------------ consensus_7906#0 ATTTATTGGGGAGTTAAGTGTATCAGACGATAGAAAACGTTATCACCTCACAGCGTTTTC 599 consensus_7906#1 ------------------------------------------------------------ consensus_7906#0 ATTTACTTTTATGGATGGTGTGAGTCTGGATTTATATAGAACTGTAACAAAGATAACTCG 659 consensus_7906#1 ------------------------------------------------------------ consensus_7906#0 AAGTTATATTGCCTACTTACCGTCTGTGTGATTTATTTTGAAGCTTTTTGTTACGTTTCA 719 consensus_7906#1 ------------------------------------------------------------ consensus_7906#0 TAACTGGTGTATATACTGGCATTACTCCTGTTTTTCCTATGTGGTAATTCAATGAGTTGT 779 consensus_7906#1 ------------------------------------------------------------ consensus_7906#0 TGAAAAAATGAATAGATTGTGAGTAN 805 consensus_7906#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||