These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7912#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 828 fasta sequence [TCGGCACGAGGGCGTCTAACAATTCATAAACTACTAAGTGAAGAATTGGATTCTTTGAAAAAACTGCGGGAAAGTGAAATCAGGAGACAACAACGTCTTGTCGAGTTTTCAGGAAATCTTGCTACTGGTGTACGCTCTGTTGCCGCATCAGGTACAAATGTCACTGCATATTTAAAGCGTCCCAATAAATATGATAACAGCGAT-ACAAAGTTAAGAAGACGTGGTAATAATAATGATAATAATAAAACTAATGATGTTTTAAACTATCATGAATCTCGACATGAAGAAAATTTCACAGAAAATGAATTACGTACACTTGAAATTGAAAATCAAATACTCTATCAACATTTTACGCAAGAGAAAGATGAACTGCATCAAGTAGCTAAGAAAATCTCTGAAATTGGTCACTTAAACCAAACATTATCGGAACACCTAATGGAACAATTAGAGACAACTGAAAAGATAGCTGACTCGTCTGTAACTGCCACTGAGTATATTCGTCAGGGAAATGAATTACTTCGTGAAGCAATCAATTCTAAAGCAACTGTACAATTTTGGATGCTTTTTATTCTTATAATCTTAACATTCTCTCTTCATTTTCTTGATTGGTTCTATCCATAAATACAAAATTTTCCGTCACTTTTTTTGTTCTTTACATTATTTTCT-CACTTCATTATTCT-GTGATAAACAATATC-GGACTAACTAACTTTGTTATCTACCACTGTTTTCTTTTCTCAATGTATTTGACCTCGTTAGTGAATTATTTGTTATTGTTTTGGTCCATAATTCCTGTTCATATATACTGTACATTTCAATAAACATTACGAA] [+] EMBL CD080402 [TCGGCACGAGGGCGTCTAACAATTCATAAACTACTAAGTGAAGAATTGGATTCTTTGAAAAAACTGCGGGAAAGTGAAATCAGGAGACAACAACGTCTTGTCGAGTTTTCAGGAAATCTTGCTACTGGTGTACGCTCTGTTGCCGCATCAGGTACAAATGTCACTGCATATTTAAAGCGTCCCAATAAATATGATAACAGCGAT ACAAAGTTAAGAAGACGTGGTAATAATAATGATAATAATAAAACTAATGATGTTTTAAACTATCATGAATCTCGACATGAAGAAAATTTCACAGAAAATGAATTACGTACACTTGAAATTGAAAATCAAATACTCTATCAACATTTTACGCAAGAGAAAGATGAACTGCATCAAGTAGCTAAGAAAATCTCTGAAATTGGTCACTTAAACCAAACATTATCGGAACACCTAATGGAACAATTAGAGACAACTGAAAAGATAGCTGACTCGTCTGTAACTGCCACTGAGTATATTCGTCAGGGAAATGAATTACTTCGTGAAGCAATCAATTCTAAAGCAACTGTACAATTTTGGATGCTTTTTATTCTTATAATCTTAACATTCTCTCTTCATTNTCTTGATTGGTTCTATCCATAAATACAAAATTTTCCGTCACTTTTTTTGTTCTTTACATTATTNTCT CACTTCATTATTCT GTGATAAACAATATC GGACTAACTAACTNTGTTATCTACCACTGNTTTCTTTTCTC ATGTATTTGACCTCGNTAGTGAAATATNTGNTATTGNTNTGGTCCATAANTNCTGNTCATATATACTGNACATTTCAAT AACATTACGA ] [-] EMBL CD074494 [ TCAGGTACAAATGTCACTGCATA TTANAGCGTCCCAATAAATATGATAACAGCGAT ACAAAGTTAAGAAGACGTGGTAATAATAATGATAATAATAAAACTAATGATGTTTTAAACTATCATGAATCTCGACATGAAGAAAATTTCACAGAAAATGAATTACGTACACTTGAAATTGAAAATCAAATACTCTATCAACATTTTACGCAAGAGAAAGATGAACTGCATCAAGTAGCTAAGAAAATCTCTGAAATTGGTCACTTAAACCAAACATTATCGGAACACCTAATGGAACAATTAGAGACAACTGAAAAGATAGCTGACTCGTCTGTAACTGCCACTGAGTATATTCGTCAGGGAAATGAATTACTTCGTGAAGCAATCAATTCTAAAGCAACTGTACAATTTTGGATGCTTTTTATTCTTATAATCTTAACATTCTCTCTTCATTTTCTTGATTGGTTCTATCCATAAATACAAAATTTTCCGTCACTTTTTTTGTTCTTTACATTATTTTCT CACTTCATTATTCT GTGATAAACAATATC GGACTAACTAACTTTGTTATCTACCACTGTTTTCTTTTCTCAATGTATTTGACCTCGTTAGTGAATTATTTGTTATTGTTTTGGTCCATAATTCCTGTTCATATATACTGTACATTTCAATAAACATTACGAA] [-] EMBL CD074317 [ AATAAATATGATAACAGCGATNNCANAGTTAAGAAGACGTGGTAATAATAATGATAATAATANAACTAATGATGTTTTAAACTATCATGAATCTCGACATGAAGAAAATTTCACAGAAAATGAATTACGTACACTTGAAATTGAAAATCAAATACTCTATCAACATTTTACGCAAGAGAAAGATGAACTGCATCAAGTAGCTAAGAAAATCTCTGAAATTGGTCACTTAAACCAAACATTATCGGAACACCTAATGGAACAATTAGAGACAACTGAAAAGATAGCTGACTCGTCTGTAACTGCCACTGAGTATATTCGTCAGGGAAATGAATTACTTCGTGAAGCAATCAATTCTAAAGCAACTGTACAATTTTGGATGCTTTTTATTCTTATAATCTTAACATTCTCTCTTCATTTTCTTGATTGGTTCTATCCATAAATACAAAATTTTCCGTCACTTTTTTTGTTCTTTACATTATTTTCT CACTTCATTATTCT GTGATAAACAATATC GGACTAACTAACTTTGTTATCTACCACTGTTTTCTTTTCTCAATGTATTTGACCTCGTTAGTGAATTATTTGTTATTGTTTTGGTCCATAATTCCTGTTCATATATACTGTACATTTCAATAAACATTACGAA] [+] EMBL AI618989 [ CATTATTTTCTGCACTTCATTATTCTGGTGATAAACAATATCGGGACTAACTAACTTTGTTATCTACCACTGTTTTCTTTTCTCAATGTATTTGACCTCGTTAGTGAATTATTTGTTATTGTTTTGGTCCATAATTCCTGTTCATATATACTGTA ] consensusID : consensus_7912#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 376 fasta sequence [GAGGAGAAGAAGACAACTTCACTTACTGGCTATGAATTTTATTTTCAGACACGTGCTGAACGTGTTCATTCAAGTATTAAAGTCTTATCAAATTATTTAAAACGTATTCATCAATTAACAGCTGGTACTTTAGGCAATTCAACTAAACAACGTTTACACGCTGAGTTAACTGAAAATGTCACTGTTTTGATTGAACAATGTGCTTTATTGTTAGCACAATTAAAAGATCTAATTCATACTACAAAAGATATTAGTAAAGTTGATCAAAGCATAACTTCAATACATGATGATTCGAATATTAGTAATAATAAAAATCAACTTATATTACATCGTCTAACAATTCATAAACTACTAAGTGAAGAATTGGATTCTTTGA] [+] EMBL CD123651 [GAGGAGAAGAAGACAACTTCACTTACTGGCTATGAATTTTATTTTCAGACACGTGCTGAACGTGTTCATTCAAGTATTAAAGTCTTATCAAATTATTTAAAACGTATTCATCAATTAACAGCTGGTACTTTAGGCAATTCAACTAAACAACGTTTACACGCTGAGTTAACTGAAAATGTCACTGTTTTGATTGAACAATGTGCTTTATTGTTAGCACAATTAA ] [+] EMBL CD123646 [ GAAGAAGAAAACTTCACTTACTGGCTATGAATTTTCTTTTCAGACACGTGCTGAAAGTCTTCATTCAAGTCTTAAAGTCTTATCAAATTATTTAAAACGTATTCATCAATTAACAGCTGGTACTTTAGGCAATTCAACTAAACAACGTTTACACGCTGAGTTAACTGAAAATGTCACTGTTTTGATTGAACAATGTACTTTATTGTTAGCACAATTAAAAGATCTAATTCATACTACAAAAGATATTAGTAAAGTTGATCAAAGCATAACTTCAATACATGATGATTCGAATATTAGTAATAATAAAAATCAACTTATATTACATCGTCTAACAATTCATAAACTACTAAGTGAAGAATTGGATTCTTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7912#0 TCGGCACGAGGGCGTCTAACAATTCATAAACTACTAAGTGAAGAATTGGATTCTTTGAAA 60 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 AAACTGCGGGAAAGTGAAATCAGGAGACAACAACGTCTTGTCGAGTTTTCAGGAAATCTT 120 consensus_7912#1 -----------------GAGGAGAAGAAGACAAC--TTCACTTACTGGCTATGAATTTTA 41 * ** *** ***** * * * * *** * * consensus_7912#0 GCTACTGGTGTACGCTCTGT-TGCCGCATCAGGTACAAATGTCACTGCA---TATTTAAA 176 consensus_7912#1 TTTTCAGACACGTGCTGAACGTGTTCATTCAAGTATTAAAGTCTTATCAAATTATTTAAA 101 * * * *** ** *** *** ** *** ** ******** consensus_7912#0 GCGTCCCAATAAATATGATAACAGCGATACAAAG----TTAAGAAGACGTGGTAATAATA 232 consensus_7912#1 ACGTATTCATCAAT-TAACAGCTGGTACTTTAGGCAATTCAACTAAACAACGTTTACACG 160 *** ** *** * * * * * * * * * ** * ** ** * consensus_7912#0 ATGATAATAATAAAACTAATGATGTTTTAAACTATCA-TGAATCTCGACATGAAGAAAAT 291 consensus_7912#1 CTGAGTTAACTGAAAATGTCACTGTTTTGATTGAACAATGTGCTTTATTGTTAGCACAAT 220 *** * * *** * ****** * * ** ** * * * * *** consensus_7912#0 TTCACAGAAAATGAATTACGTACACTTGAAATTGAAAATCAAATACTCTATCAACATTTT 351 consensus_7912#1 T----AAAAGATCTAATTCATAC---TACAAAAGATATTAGTAAAGTTGATCAAAGCATA 273 * * ** ** * * * *** * ** ** * * * * * ***** * consensus_7912#0 ACGCAAGAGAAAGATGAACTGCAT-CAAGTAGCTAAGAAAATCTCTGAAATTGGTCACTT 410 consensus_7912#1 ACTTCAATACATGATGATTCGAATATTAGTAATAATAAAAATC---AACTTATATTACAT 330 ** * * ***** * ** **** * ****** * * * ** * consensus_7912#0 AAACCAAACATTATCGGAACACCTAATGGAACAATTAGAGACAACTGAAAAGATAGCTGA 470 consensus_7912#1 CG-TCTAACAATTCATAAACTACTAAGTGAAGAATTGGATTCT-TTGA------------ 376 * **** * *** **** *** **** ** * *** consensus_7912#0 CTCGTCTGTAACTGCCACTGAGTATATTCGTCAGGGAAATGAATTACTTCGTGAAGCAAT 530 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 CAATTCTAAAGCAACTGTACAATTTTGGATGCTTTTTATTCTTATAATCTTAACATTCTC 590 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 TCTTCATTTTCTTGATTGGTTCTATCCATAAATACAAAATTTTCCGTCACTTTTTTTGTT 650 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 CTTTACATTATTTTCTCACTTCATTATTCTGTGATAAACAATATCGGACTAACTAACTTT 710 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 GTTATCTACCACTGTTTTCTTTTCTCAATGTATTTGACCTCGTTAGTGAATTATTTGTTA 770 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 TTGTTTTGGTCCATAATTCCTGTTCATATATACTGTACATTTCAATAAACATTACGAA 828 consensus_7912#1 ---------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||